SNP Links for Gene (Select 100288122) - SNP

Links from Gene

Items: 1 to 20 of 2378

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Select item 14909353501.

rs1490935350 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:13419909 (GRCh38)
18:13419908 (GRCh37)
Canonical SPDI:: NC_000018.10:13419908:A:G
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.13419909A>G, NC_000018.9:g.13419908A>G, NR_040031.1:n.1756T>C

Select item 14907777652.

rs1490777765 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 18:13422352 (GRCh38)
18:13422351 (GRCh37)
Canonical SPDI:: NC_000018.10:13422351:T:C,NC_000018.10:13422351:T:G
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000018.10:g.13422352T>C, NC_000018.10:g.13422352T>G, NC_000018.9:g.13422351T>C, NC_000018.9:g.13422351T>G

Select item 14905973063.

rs1490597306 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:13421628 (GRCh38)
18:13421627 (GRCh37)
Canonical SPDI:: NC_000018.10:13421627:C:T
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000018.10:g.13421628C>T, NC_000018.9:g.13421627C>T

Select item 14904455694.

rs1490445569 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13420420 (GRCh38)
18:13420419 (GRCh37)
Canonical SPDI:: NC_000018.10:13420419:G:A
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000018.10:g.13420420G>A, NC_000018.9:g.13420419G>A, NR_040031.1:n.1245C>T

Select item 14895178275.

rs1489517827 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:13428059 (GRCh38)
18:13428058 (GRCh37)
Canonical SPDI:: NC_000018.10:13428058:C:T
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.13428059C>T, NC_000018.9:g.13428058C>T

Select item 14892302996.

rs1489230299 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13420959 (GRCh38)
18:13420958 (GRCh37)
Canonical SPDI:: NC_000018.10:13420958:G:A
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000018.10:g.13420959G>A, NC_000018.9:g.13420958G>A, NR_040031.1:n.706C>T

Select item 14891366737.

rs1489136673 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:13421210 (GRCh38)
18:13421209 (GRCh37)
Canonical SPDI:: NC_000018.10:13421209:T:C
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,splice_acceptor_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000018.10:g.13421210T>C, NC_000018.9:g.13421209T>C

Select item 14885031028.

rs1488503102 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13424008 (GRCh38)
18:13424007 (GRCh37)
Canonical SPDI:: NC_000018.10:13424007:G:A
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000018.10:g.13424008G>A, NC_000018.9:g.13424007G>A

Select item 14883664139.

rs1488366413 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:13424840 (GRCh38)
18:13424839 (GRCh37)
Canonical SPDI:: NC_000018.10:13424839:T:C
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.13424840T>C, NC_000018.9:g.13424839T>C, XM_047437790.1:c.-798T>C

Select item 148818798310.

rs1488187983 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 18:13424546 (GRCh38)
18:13424545 (GRCh37)
Canonical SPDI:: NC_000018.10:13424545:A:T
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000018.10:g.13424546A>T, NC_000018.9:g.13424545A>T, XM_047437790.1:c.-1092A>T

Select item 148815814311.

rs1488158143 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13421609 (GRCh38)
18:13421608 (GRCh37)
Canonical SPDI:: NC_000018.10:13421608:G:A
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000018.10:g.13421609G>A, NC_000018.9:g.13421608G>A

Select item 148755717912.

rs1487557179 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 18:13429074 (GRCh38)
18:13429073 (GRCh37)
Canonical SPDI:: NC_000018.10:13429073:T:A,NC_000018.10:13429073:T:C
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.13429074T>A, NC_000018.10:g.13429074T>C, NC_000018.9:g.13429073T>A, NC_000018.9:g.13429073T>C

Select item 148687164113.

rs1486871641 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:13428548 (GRCh38)
18:13428547 (GRCh37)
Canonical SPDI:: NC_000018.10:13428547:C:T
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000018.10:g.13428548C>T, NC_000018.9:g.13428547C>T

Select item 148677471814.

rs1486774718 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 18:13419173 (GRCh38)
18:13419172 (GRCh37)
Canonical SPDI:: NC_000018.10:13419172:T:A
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.13419173T>A, NC_000018.9:g.13419172T>A

Select item 148624717715.

rs1486247177 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:13423804 (GRCh38)
18:13423803 (GRCh37)
Canonical SPDI:: NC_000018.10:13423803:A:G
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000018.10:g.13423804A>G, NC_000018.9:g.13423803A>G

Select item 148619664116.

rs1486196641 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 18:13422789 (GRCh38)
18:13422788 (GRCh37)
Canonical SPDI:: NC_000018.10:13422788:T:
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0./0 (GnomAD)
-=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.13422789del, NC_000018.9:g.13422788del

Select item 148618425117.

rs1486184251 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 18:13422207 (GRCh38)
18:13422206 (GRCh37)
Canonical SPDI:: NC_000018.10:13422206:T:A
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000018.10:g.13422207T>A, NC_000018.9:g.13422206T>A

Select item 148596072018.

rs1485960720 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 18:13426719 (GRCh38)
18:13426718 (GRCh37)
Canonical SPDI:: NC_000018.10:13426718:A:G,NC_000018.10:13426718:A:T
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000018.10:g.13426719A>G, NC_000018.10:g.13426719A>T, NC_000018.9:g.13426718A>G, NC_000018.9:g.13426718A>T

Select item 148592818519.

rs1485928185 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:13420245 (GRCh38)
18:13420244 (GRCh37)
Canonical SPDI:: NC_000018.10:13420244:A:G
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000057/15 (TOPMED)
G=0.000057/8 (GnomAD)
HGVS:: NC_000018.10:g.13420245A>G, NC_000018.9:g.13420244A>G, NR_040031.1:n.1420T>C

Select item 148582233920.

rs1485822339 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13423204 (GRCh38)
18:13423203 (GRCh37)
Canonical SPDI:: NC_000018.10:13423203:G:A
Gene:: LDLRAD4 (Varview), LDLRAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000042/11 (TOPMED)
HGVS:: NC_000018.10:g.13423204G>A, NC_000018.9:g.13423203G>A

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