SNP Links for Gene (Select 100287616) - SNP

Links from Gene

Items: 1 to 20 of 3127

<< First< Prev

Page of 157

Next >Last >>

Select item 14914353531.

rs1491435353 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:73928601 (GRCh38)
15:74220942 (GRCh37)
Canonical SPDI:: NC_000015.10:73928600:CA:
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00017/2 (ALFA)
HGVS:: NC_000015.10:g.73928601_73928602del, NC_000015.9:g.74220942_74220943del, NG_011466.1:g.7154_7155del

Select item 14912263562.

rs1491226356 has merged into rs55696344 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:73928613 (GRCh38)
15:74220954 (GRCh37)
Canonical SPDI:: NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:73928601:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
AAAAAAAA=0.0302/151 (1000Genomes)
HGVS:: NC_000015.10:g.73928613_73928625del, NC_000015.10:g.73928614_73928625del, NC_000015.10:g.73928615_73928625del, NC_000015.10:g.73928616_73928625del, NC_000015.10:g.73928617_73928625del, NC_000015.10:g.73928618_73928625del, NC_000015.10:g.73928619_73928625del, NC_000015.10:g.73928620_73928625del, NC_000015.10:g.73928621_73928625del, NC_000015.10:g.73928622_73928625del, NC_000015.10:g.73928623_73928625del, NC_000015.10:g.73928624_73928625del, NC_000015.10:g.73928625del, NC_000015.10:g.73928625dup, NC_000015.10:g.73928624_73928625dup, NC_000015.10:g.73928622_73928625dup, NC_000015.10:g.73928620_73928625dup, NC_000015.10:g.73928616_73928625dup, NC_000015.10:g.73928615_73928625dup, NC_000015.10:g.73928614_73928625dup, NC_000015.10:g.73928613_73928625dup, NC_000015.10:g.73928608_73928625dup, NC_000015.9:g.74220954_74220966del, NC_000015.9:g.74220955_74220966del, NC_000015.9:g.74220956_74220966del, NC_000015.9:g.74220957_74220966del, NC_000015.9:g.74220958_74220966del, NC_000015.9:g.74220959_74220966del, NC_000015.9:g.74220960_74220966del, NC_000015.9:g.74220961_74220966del, NC_000015.9:g.74220962_74220966del, NC_000015.9:g.74220963_74220966del, NC_000015.9:g.74220964_74220966del, NC_000015.9:g.74220965_74220966del, NC_000015.9:g.74220966del, NC_000015.9:g.74220966dup, NC_000015.9:g.74220965_74220966dup, NC_000015.9:g.74220963_74220966dup, NC_000015.9:g.74220961_74220966dup, NC_000015.9:g.74220957_74220966dup, NC_000015.9:g.74220956_74220966dup, NC_000015.9:g.74220955_74220966dup, NC_000015.9:g.74220954_74220966dup, NC_000015.9:g.74220949_74220966dup, NG_011466.1:g.7166_7178del, NG_011466.1:g.7167_7178del, NG_011466.1:g.7168_7178del, NG_011466.1:g.7169_7178del, NG_011466.1:g.7170_7178del, NG_011466.1:g.7171_7178del, NG_011466.1:g.7172_7178del, NG_011466.1:g.7173_7178del, NG_011466.1:g.7174_7178del, NG_011466.1:g.7175_7178del, NG_011466.1:g.7176_7178del, NG_011466.1:g.7177_7178del, NG_011466.1:g.7178del, NG_011466.1:g.7178dup, NG_011466.1:g.7177_7178dup, NG_011466.1:g.7175_7178dup, NG_011466.1:g.7173_7178dup, NG_011466.1:g.7169_7178dup, NG_011466.1:g.7168_7178dup, NG_011466.1:g.7167_7178dup, NG_011466.1:g.7166_7178dup, NG_011466.1:g.7161_7178dup

Select item 14908515793.

rs1490851579 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:73923529 (GRCh38)
15:74215870 (GRCh37)
Canonical SPDI:: NC_000015.10:73923528:C:G,NC_000015.10:73923528:C:T
Gene:: LOXL1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
T=0.000142/2 (TOMMO)
HGVS:: NC_000015.10:g.73923529C>G, NC_000015.10:g.73923529C>T, NC_000015.9:g.74215870C>G, NC_000015.9:g.74215870C>T, NG_011466.1:g.2082C>G, NG_011466.1:g.2082C>T

Select item 14908053284.

rs1490805328 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:73924531 (GRCh38)
15:74216872 (GRCh37)
Canonical SPDI:: NC_000015.10:73924530:C:T
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.73924531C>T, NC_000015.9:g.74216872C>T, NG_011466.1:g.3084C>T

Select item 14903961905.

rs1490396190 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:73930148 (GRCh38)
15:74222489 (GRCh37)
Canonical SPDI:: NC_000015.10:73930147:A:C
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.73930148A>C, NC_000015.9:g.74222489A>C, NG_011466.1:g.8701A>C

Select item 14903151866.

rs1490315186 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:73924998 (GRCh38)
15:74217339 (GRCh37)
Canonical SPDI:: NC_000015.10:73924997:A:G
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.73924998A>G, NC_000015.9:g.74217339A>G, NG_011466.1:g.3551A>G

Select item 14900380987.

rs1490038098 [Homo sapiens]

Variant type:: DEL
Alleles:: TTTGG>- [Show Flanks]
Chromosome:: 15:73930055 (GRCh38)
15:74222396 (GRCh37)
Canonical SPDI:: NC_000015.10:73930054:TTTGG:
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.73930055_73930059del, NC_000015.9:g.74222396_74222400del, NG_011466.1:g.8608_8612del

Select item 14898742138.

rs1489874213 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:73928871 (GRCh38)
15:74221212 (GRCh37)
Canonical SPDI:: NC_000015.10:73928870:A:C,NC_000015.10:73928870:A:G
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
G=0.000035/1 (TOMMO)
G=0.000085/5 (GnomAD)
HGVS:: NC_000015.10:g.73928871A>C, NC_000015.10:g.73928871A>G, NC_000015.9:g.74221212A>C, NC_000015.9:g.74221212A>G, NG_011466.1:g.7424A>C, NG_011466.1:g.7424A>G

Select item 14895744669.

rs1489574466 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:73922265 (GRCh38)
15:74214606 (GRCh37)
Canonical SPDI:: NC_000015.10:73922264:C:T
Gene:: LOXL1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.73922265C>T, NC_000015.9:g.74214606C>T, NG_011466.1:g.818C>T

Select item 148916737610.

rs1489167376 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:73917445 (GRCh38)
15:74209786 (GRCh37)
Canonical SPDI:: NC_000015.10:73917444:A:G
Gene:: LOXL1-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.73917445A>G, NC_000015.9:g.74209786A>G

Select item 148859207911.

rs1488592079 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 15:73922710 (GRCh38)
15:74215052 (GRCh37)
Canonical SPDI:: NC_000015.10:73922710:A:AA
Gene:: LOXL1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.73922711dup, NC_000015.9:g.74215052dup, NG_011466.1:g.1264dup

Select item 148857982412.

rs1488579824 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:73917199 (GRCh38)
15:74209540 (GRCh37)
Canonical SPDI:: NC_000015.10:73917198:G:A
Gene:: LOXL1-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.73917199G>A, NC_000015.9:g.74209540G>A

Select item 148855251013.

rs1488552510 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:73922947 (GRCh38)
15:74215288 (GRCh37)
Canonical SPDI:: NC_000015.10:73922946:C:G
Gene:: LOXL1-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.73922947C>G, NC_000015.9:g.74215288C>G, NG_011466.1:g.1500C>G

Select item 148830311214.

rs1488303112 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:73926979 (GRCh38)
15:74219320 (GRCh37)
Canonical SPDI:: NC_000015.10:73926978:C:T
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: missense_variant,intron_variant,genic_upstream_transcript_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.73926979C>T, NC_000015.9:g.74219320C>T, NG_011466.1:g.5532C>T, NM_005576.4:c.196C>T, NM_005576.3:c.196C>T, NM_005576.2:c.196C>T, XM_011521555.3:c.196C>T, XM_011521555.2:c.196C>T, XM_011521555.1:c.196C>T, XM_047432498.1:c.196C>T, NP_005567.2:p.Pro66Ser, XP_011519857.1:p.Pro66Ser, XP_047288454.1:p.Pro66Ser

Select item 148782926815.

rs1487829268 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:73917163 (GRCh38)
15:74209504 (GRCh37)
Canonical SPDI:: NC_000015.10:73917162:G:A
Gene:: LOXL1-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000139/2 (ALFA)
A=0.000034/9 (TOPMED)
A=0.000093/13 (GnomAD)
HGVS:: NC_000015.10:g.73917163G>A, NC_000015.9:g.74209504G>A

Select item 148777008416.

rs1487770084 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:73926655 (GRCh38)
15:74218996 (GRCh37)
Canonical SPDI:: NC_000015.10:73926654:G:T
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.73926655G>T, NC_000015.9:g.74218996G>T, NG_011466.1:g.5208G>T, NM_005576.4:c.-129G>T, NM_005576.3:c.-129G>T, NM_005576.2:c.-129G>T, XM_011521555.3:c.-129G>T, XM_011521555.2:c.-129G>T, XM_011521555.1:c.-129G>T, XM_047432498.1:c.-129G>T

Select item 148735334717.

rs1487353347 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:73926975 (GRCh38)
15:74219316 (GRCh37)
Canonical SPDI:: NC_000015.10:73926974:C:T
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,coding_sequence_variant,synonymous_variant
HGVS:: NC_000015.10:g.73926975C>T, NC_000015.9:g.74219316C>T, NG_011466.1:g.5528C>T, NM_005576.4:c.192C>T, NM_005576.3:c.192C>T, NM_005576.2:c.192C>T, XM_011521555.3:c.192C>T, XM_011521555.2:c.192C>T, XM_011521555.1:c.192C>T, XM_047432498.1:c.192C>T

Select item 148711188118.

rs1487111881 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 15:73928627 (GRCh38)
15:74220968 (GRCh37)
Canonical SPDI:: NC_000015.10:73928626:C:A,NC_000015.10:73928626:C:G
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000009/1 (GnomAD)
HGVS:: NC_000015.10:g.73928627C>A, NC_000015.10:g.73928627C>G, NC_000015.9:g.74220968C>A, NC_000015.9:g.74220968C>G, NG_011466.1:g.7180C>A, NG_011466.1:g.7180C>G

Select item 148695146819.

rs1486951468 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:73925121 (GRCh38)
15:74217462 (GRCh37)
Canonical SPDI:: NC_000015.10:73925120:G:T
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.73925121G>T, NC_000015.9:g.74217462G>T, NG_011466.1:g.3674G>T

Select item 148680781120.

rs1486807811 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATGAG>- [Show Flanks]
Chromosome:: 15:73928559 (GRCh38)
15:74220900 (GRCh37)
Canonical SPDI:: NC_000015.10:73928554:TGAGATGAG:TGAG
Gene:: LOXL1 (Varview), LOXL1-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGAG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.73928559_73928563del, NC_000015.9:g.74220900_74220904del, NG_011466.1:g.7112_7116del

<< First< Prev

Page of 157

Next >Last >>

dbSNP

Result Filters

Clinical Significance

Validation Status

Publication

Function Class

Variation Class

Annotation

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Gene

Items: 1 to 20 of 3127

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity