SNP Links for Gene (Select 100286925) - SNP

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Items: 1 to 20 of 1702

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Select item 14898254761.

rs1489825476 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:21937373 (GRCh38)
22:22291745 (GRCh37)
Canonical SPDI:: NC_000022.11:21937372:G:A,NC_000022.11:21937372:G:C
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.21937373G>A, NC_000022.11:g.21937373G>C, NC_000022.10:g.22291745G>A, NC_000022.10:g.22291745G>C

Select item 14895752382.

rs1489575238 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 22:21939435 (GRCh38)
22:22293807 (GRCh37)
Canonical SPDI:: NC_000022.11:21939434:C:A,NC_000022.11:21939434:C:G
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000014/2 (GnomAD)
G=0.00006/1 (TOMMO)
HGVS:: NC_000022.11:g.21939435C>A, NC_000022.11:g.21939435C>G, NC_000022.10:g.22293807C>A, NC_000022.10:g.22293807C>G, NR_147620.1:n.1199C>A, NR_147620.1:n.1199C>G

Select item 14886796343.

rs1488679634 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:21940016 (GRCh38)
22:22294388 (GRCh37)
Canonical SPDI:: NC_000022.11:21940015:T:C
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
C=0.000546/1 (Korea1K)
HGVS:: NC_000022.11:g.21940016T>C, NC_000022.10:g.22294388T>C

Select item 14872100694.

rs1487210069 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21937578 (GRCh38)
22:22291950 (GRCh37)
Canonical SPDI:: NC_000022.11:21937577:C:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000036/5 (GnomAD)
T=0.000102/27 (TOPMED)
T=0.000156/1 (1000Genomes)
T=0.001132/19 (TOMMO)
T=0.003082/9 (KOREAN)
T=0.004367/8 (Korea1K)
HGVS:: NC_000022.11:g.21937578C>T, NC_000022.10:g.22291950C>T

Select item 14870349525.

rs1487034952 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:21937706 (GRCh38)
22:22292078 (GRCh37)
Canonical SPDI:: NC_000022.11:21937705:C:G,NC_000022.11:21937705:C:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000546/1 (Korea1K)
HGVS:: NC_000022.11:g.21937706C>G, NC_000022.11:g.21937706C>T, NC_000022.10:g.22292078C>G, NC_000022.10:g.22292078C>T

Select item 14854125226.

rs1485412522 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:21941024 (GRCh38)
22:22295396 (GRCh37)
Canonical SPDI:: NC_000022.11:21941023:G:A
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.21941024G>A, NC_000022.10:g.22295396G>A

Select item 14853978077.

rs1485397807 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21942611 (GRCh38)
22:22296983 (GRCh37)
Canonical SPDI:: NC_000022.11:21942610:C:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.21942611C>T, NC_000022.10:g.22296983C>T, NR_147620.1:n.2887C>T

Select item 14853354068.

rs1485335406 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 22:21940435 (GRCh38)
22:22294807 (GRCh37)
Canonical SPDI:: NC_000022.11:21940434:T:A
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000022/3 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000022.11:g.21940435T>A, NC_000022.10:g.22294807T>A

Select item 14851368449.

rs1485136844 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21937813 (GRCh38)
22:22292185 (GRCh37)
Canonical SPDI:: NC_000022.11:21937812:C:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.21937813C>T, NC_000022.10:g.22292185C>T

Select item 148427675110.

rs1484276751 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:21938178 (GRCh38)
22:22292550 (GRCh37)
Canonical SPDI:: NC_000022.11:21938177:G:A
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.21938178G>A, NC_000022.10:g.22292550G>A

Select item 148419368911.

rs1484193689 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:21943905 (GRCh38)
22:22298277 (GRCh37)
Canonical SPDI:: NC_000022.11:21943904:C:A
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.21943905C>A, NC_000022.10:g.22298277C>A

Select item 148360449012.

rs1483604490 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:21936461 (GRCh38)
22:22290833 (GRCh37)
Canonical SPDI:: NC_000022.11:21936460:G:A,NC_000022.11:21936460:G:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
A=0.000546/1 (Korea1K)
A=0.000684/2 (KOREAN)
HGVS:: NC_000022.11:g.21936461G>A, NC_000022.11:g.21936461G>T, NC_000022.10:g.22290833G>A, NC_000022.10:g.22290833G>T

Select item 148350124013.

rs1483501240 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21942549 (GRCh38)
22:22296921 (GRCh37)
Canonical SPDI:: NC_000022.11:21942548:C:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.21942549C>T, NC_000022.10:g.22296921C>T, NR_147620.1:n.2825C>T

Select item 148307093914.

rs1483070939 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21942509 (GRCh38)
22:22296881 (GRCh37)
Canonical SPDI:: NC_000022.11:21942508:C:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.21942509C>T, NC_000022.10:g.22296881C>T, NR_147620.1:n.2785C>T

Select item 148290286415.

rs1482902864 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:21939868 (GRCh38)
22:22294240 (GRCh37)
Canonical SPDI:: NC_000022.11:21939867:G:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.21939868G>T, NC_000022.10:g.22294240G>T

Select item 148245928816.

rs1482459288 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:21939260 (GRCh38)
22:22293632 (GRCh37)
Canonical SPDI:: NC_000022.11:21939259:G:T
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000022.11:g.21939260G>T, NC_000022.10:g.22293632G>T, NR_147620.1:n.1024G>T

Select item 148213000217.

rs1482130002 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:21940450 (GRCh38)
22:22294822 (GRCh37)
Canonical SPDI:: NC_000022.11:21940449:G:C
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.21940450G>C, NC_000022.10:g.22294822G>C

Select item 148206953418.

rs1482069534 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 22:21941644 (GRCh38)
22:22296016 (GRCh37)
Canonical SPDI:: NC_000022.11:21941643:A:C
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000022.11:g.21941644A>C, NC_000022.10:g.22296016A>C, NR_147620.1:n.1920A>C

Select item 148163051519.

rs1481630515 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:21943022 (GRCh38)
22:22297394 (GRCh37)
Canonical SPDI:: NC_000022.11:21943021:G:A
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.21943022G>A, NC_000022.10:g.22297394G>A, NR_147620.1:n.3298G>A

Select item 148128270620.

rs1481282706 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:21937369 (GRCh38)
22:22291741 (GRCh37)
Canonical SPDI:: NC_000022.11:21937368:T:C
Gene:: PPM1F (Varview), PPM1F-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000022.11:g.21937369T>C, NC_000022.10:g.22291741T>C

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