SNP Links for Gene (Select 100270746) - SNP

Links from Gene

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Select item 14889456161.

rs1488945616 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:27019287 (GRCh38)
6:26987066 (GRCh37)
Canonical SPDI:: NC_000006.12:27019286:C:G
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000006.12:g.27019287C>G, NC_000006.11:g.26987066C>G

Select item 14889444752.

rs1488944475 [Homo sapiens]

Variant type:: DELINS
Alleles:: AC>- [Show Flanks]
Chromosome:: 6:27019819 (GRCh38)
6:26987598 (GRCh37)
Canonical SPDI:: NC_000006.12:27019816:ACAC:AC
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: ACAC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.27019817AC[1], NC_000006.11:g.26987596AC[1], NR_026776.1:n.487GT[1]

Select item 14873313193.

rs1487331319 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 6:27021234 (GRCh38)
6:26989013 (GRCh37)
Canonical SPDI:: NC_000006.12:27021233:A:
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000084/1 (ALFA)
-=0.000015/4 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.27021234del, NC_000006.11:g.26989013del

Select item 14870952984.

rs1487095298 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:27022059 (GRCh38)
6:26989838 (GRCh37)
Canonical SPDI:: NC_000006.12:27022058:T:C
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27022059T>C, NC_000006.11:g.26989838T>C

Select item 14856767995.

rs1485676799 [Homo sapiens]

Variant type:: DEL
Alleles:: AGT>- [Show Flanks]
Chromosome:: 6:27020610 (GRCh38)
6:26988389 (GRCh37)
Canonical SPDI:: NC_000006.12:27020609:AGT:
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.27020610_27020612del, NC_000006.11:g.26988389_26988391del

Select item 14844064976.

rs1484406497 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:27018979 (GRCh38)
6:26986758 (GRCh37)
Canonical SPDI:: NC_000006.12:27018978:T:A
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27018979T>A, NC_000006.11:g.26986758T>A

Select item 14835308267.

rs1483530826 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:27019633 (GRCh38)
6:26987412 (GRCh37)
Canonical SPDI:: NC_000006.12:27019632:G:A
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000342/1 (KOREAN)
HGVS:: NC_000006.12:g.27019633G>A, NC_000006.11:g.26987412G>A, NR_026776.1:n.674C>T

Select item 14824751088.

rs1482475108 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATA>- [Show Flanks]
Chromosome:: 6:27021947 (GRCh38)
6:26989726 (GRCh37)
Canonical SPDI:: NC_000006.12:27021944:TAATA:TA
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27021947_27021949del, NC_000006.11:g.26989726_26989728del

Select item 14802560119.

rs1480256011 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:27020492 (GRCh38)
6:26988271 (GRCh37)
Canonical SPDI:: NC_000006.12:27020491:C:T
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27020492C>T, NC_000006.11:g.26988271C>T

Select item 147875406710.

rs1478754067 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:27019890 (GRCh38)
6:26987669 (GRCh37)
Canonical SPDI:: NC_000006.12:27019889:A:G
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000006.12:g.27019890A>G, NC_000006.11:g.26987669A>G, NR_026776.1:n.417T>C

Select item 147645955111.

rs1476459551 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 6:27021426 (GRCh38)
6:26989205 (GRCh37)
Canonical SPDI:: NC_000006.12:27021425:G:
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27021426del, NC_000006.11:g.26989205del

Select item 147606970312.

rs1476069703 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 6:27020861 (GRCh38)
6:26988640 (GRCh37)
Canonical SPDI:: NC_000006.12:27020860:G:A,NC_000006.12:27020860:G:T
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.27020861G>A, NC_000006.12:g.27020861G>T, NC_000006.11:g.26988640G>A, NC_000006.11:g.26988640G>T

Select item 147548906513.

rs1475489065 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 6:27020724 (GRCh38)
6:26988503 (GRCh37)
Canonical SPDI:: NC_000006.12:27020723:GGGG:GGG
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27020727del, NC_000006.11:g.26988506del

Select item 147453816814.

rs1474538168 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 6:27019140 (GRCh38)
6:26986919 (GRCh37)
Canonical SPDI:: NC_000006.12:27019139:GG:G
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.27019141del, NC_000006.11:g.26986920del

Select item 147407731515.

rs1474077315 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:27020230 (GRCh38)
6:26988009 (GRCh37)
Canonical SPDI:: NC_000006.12:27020229:G:T
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.27020230G>T, NC_000006.11:g.26988009G>T, NR_026776.1:n.77C>A

Select item 147280505816.

rs1472805058 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:27022185 (GRCh38)
6:26989964 (GRCh37)
Canonical SPDI:: NC_000006.12:27022184:A:G
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000142/2 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.27022185A>G, NC_000006.11:g.26989964A>G

Select item 147220563517.

rs1472205635 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:27022030 (GRCh38)
6:26989809 (GRCh37)
Canonical SPDI:: NC_000006.12:27022029:G:C
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000006.12:g.27022030G>C, NC_000006.11:g.26989809G>C

Select item 147206292818.

rs1472062928 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:27020031 (GRCh38)
6:26987810 (GRCh37)
Canonical SPDI:: NC_000006.12:27020030:C:T
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27020031C>T, NC_000006.11:g.26987810C>T, NR_026776.1:n.276G>A

Select item 147087526819.

rs1470875268 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 6:27020558 (GRCh38)
6:26988337 (GRCh37)
Canonical SPDI:: NC_000006.12:27020557:TTTTT:TTTT,NC_000006.12:27020557:TTTTT:TTTTTT
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27020562del, NC_000006.12:g.27020562dup, NC_000006.11:g.26988341del, NC_000006.11:g.26988341dup

Select item 147067696620.

rs1470676966 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:27020095 (GRCh38)
6:26987874 (GRCh37)
Canonical SPDI:: NC_000006.12:27020094:T:G
Gene:: LINC00240 (Varview), LOC100270746 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000006.12:g.27020095T>G, NC_000006.11:g.26987874T>G, NR_026776.1:n.212A>C

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