SNP Links for Gene (Select 100132948) - SNP

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Select item 14915170081.

rs1491517008 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TCTCTCCCATTCTCTCCTCTCTCTGTCTCTC
Chromosome:: no mapping
Canonical SPDI:

Select item 14911180812.

rs1491118081 has merged into rs1424413830 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>-,AGAG [Show Flanks]
Chromosome:: 9:61854582 (GRCh38)
9:44990734 (GRCh37)
Canonical SPDI:: NC_000009.12:61854580:GAG:G,NC_000009.12:61854580:GAG:GAGAG
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGAG=0./0 (ALFA)
-=0.0033/53 (TOMMO)
-=0.01024/18 (Korea1K)
HGVS:: NC_000009.12:g.61854582_61854583del, NC_000009.12:g.61854582_61854583dup, NC_000009.11:g.44990734_44990735del, NC_000009.11:g.44990734_44990735dup

Select item 14907509623.

rs1490750962 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 9:61852542 (GRCh38)
9:44988694 (GRCh37)
Canonical SPDI:: NC_000009.12:61852541:TT:T
Gene:: FAM27C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.61852543del, NC_000009.11:g.44988695del

Select item 14906826794.

rs1490682679 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:61854066 (GRCh38)
9:44990218 (GRCh37)
Canonical SPDI:: NC_000009.12:61854065:G:A
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00005/7 (GnomAD)
HGVS:: NC_000009.12:g.61854066G>A, NC_000009.11:g.44990218G>A

Select item 14898667485.

rs1489866748 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:61854238 (GRCh38)
9:44990390 (GRCh37)
Canonical SPDI:: NC_000009.12:61854237:C:A,NC_000009.12:61854237:C:T
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000031/4 (GnomAD)
HGVS:: NC_000009.12:g.61854238C>A, NC_000009.12:g.61854238C>T, NC_000009.11:g.44990390C>A, NC_000009.11:g.44990390C>T, NR_024060.3:n.155C>A, NR_024060.3:n.155C>T, NR_027421.1:n.155C>A, NR_027421.1:n.155C>T

Select item 14876633246.

rs1487663324 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:61854727 (GRCh38)
9:44990879 (GRCh37)
Canonical SPDI:: NC_000009.12:61854726:G:A
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.61854727G>A, NC_000009.11:g.44990879G>A

Select item 14872326397.

rs1487232639 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:61855682 (GRCh38)
9:44991834 (GRCh37)
Canonical SPDI:: NC_000009.12:61855681:T:G
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.34193/4056 (ALFA)
HGVS:: NC_000009.12:g.61855682T>G, NC_000009.11:g.44991834T>G

Select item 14870494138.

rs1487049413 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 9:61854765 (GRCh38)
9:44990917 (GRCh37)
Canonical SPDI:: NC_000009.12:61854764:G:C,NC_000009.12:61854764:G:T
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00043/7 (ALFA)
C=0.00016/4 (TOMMO)
C=0.00824/24 (KOREAN)
HGVS:: NC_000009.12:g.61854765G>C, NC_000009.12:g.61854765G>T, NC_000009.11:g.44990917G>C, NC_000009.11:g.44990917G>T

Select item 14865534989.

rs1486553498 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:61854820 (GRCh38)
9:44990972 (GRCh37)
Canonical SPDI:: NC_000009.12:61854819:T:A,NC_000009.12:61854819:T:C
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00208/34 (ALFA)
C=0.00764/22 (KOREAN)
HGVS:: NC_000009.12:g.61854820T>A, NC_000009.12:g.61854820T>C, NC_000009.11:g.44990972T>A, NC_000009.11:g.44990972T>C

Select item 148602033610.

rs1486020336 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:61855563 (GRCh38)
9:44991715 (GRCh37)
Canonical SPDI:: NC_000009.12:61855562:C:T
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.33603/3986 (ALFA)
HGVS:: NC_000009.12:g.61855563C>T, NC_000009.11:g.44991715C>T

Select item 148480857811.

rs1484808578 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:61852313 (GRCh38)
9:44988465 (GRCh37)
Canonical SPDI:: NC_000009.12:61852312:A:G
Gene:: FAM27C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.000084/1 (ALFA)
G=0.000038/5 (GnomAD)
HGVS:: NC_000009.12:g.61852313A>G, NC_000009.11:g.44988465A>G

Select item 148461034312.

rs1484610343 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:61854380 (GRCh38)
9:44990532 (GRCh37)
Canonical SPDI:: NC_000009.12:61854379:A:G
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.11024/1482 (ALFA)
G=0.03919/251 (1000Genomes)
G=0.08478/6368 (GnomAD)
G=0.12176/2041 (TOMMO)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000009.12:g.61854380A>G, NC_000009.11:g.44990532A>G

Select item 148373342913.

rs1483733429 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCTGTGTGTGTGTGTGTGTGT>- [Show Flanks]
Chromosome:: 9:61854555 (GRCh38)
9:44990707 (GRCh37)
Canonical SPDI:: NC_000009.12:61854543:TGTGTGTGTGTCTCTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGT
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGT=0.00059/7 (ALFA)
-=0.00054/47 (GnomAD)
HGVS:: NC_000009.12:g.61854555_61854576del, NC_000009.11:g.44990707_44990728del

Select item 148360939614.

rs1483609396 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 9:61854298 (GRCh38)
9:44990450 (GRCh37)
Canonical SPDI:: NC_000009.12:61854297:G:A,NC_000009.12:61854297:G:C,NC_000009.12:61854297:G:T
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.0025/4 (Korea1K)
C=0.0628/554 (TOMMO)
A=0.125/2 (SGDP_PRJ)
C=0.2357/568 (KOREAN)
C=0.3436/771 (GnomAD_exomes)
HGVS:: NC_000009.12:g.61854298G>A, NC_000009.12:g.61854298G>C, NC_000009.12:g.61854298G>T, NC_000009.11:g.44990450G>A, NC_000009.11:g.44990450G>C, NC_000009.11:g.44990450G>T, NR_024060.3:n.215G>A, NR_024060.3:n.215G>C, NR_024060.3:n.215G>T, NR_027421.1:n.215G>A, NR_027421.1:n.215G>C, NR_027421.1:n.215G>T

Select item 148320128915.

rs1483201289 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:61853758 (GRCh38)
9:44989910 (GRCh37)
Canonical SPDI:: NC_000009.12:61853757:C:T
Gene:: FAM27C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0016/19 (ALFA)
T=0.00144/77 (GnomAD)
T=0.00422/27 (1000Genomes)
HGVS:: NC_000009.12:g.61853758C>T, NC_000009.11:g.44989910C>T

Select item 148287943316.

rs1482879433 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:61852146 (GRCh38)
9:44988298 (GRCh37)
Canonical SPDI:: NC_000009.12:61852145:T:C
Gene:: FAM27C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000084/1 (ALFA)
C=0.000033/4 (GnomAD)
HGVS:: NC_000009.12:g.61852146T>C, NC_000009.11:g.44988298T>C

Select item 148274637317.

rs1482746373 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:61853931 (GRCh38)
9:44990083 (GRCh37)
Canonical SPDI:: NC_000009.12:61853930:G:C
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000032/4 (GnomAD)
HGVS:: NC_000009.12:g.61853931G>C, NC_000009.11:g.44990083G>C

Select item 148213849318.

rs1482138493 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:61854214 (GRCh38)
9:44990366 (GRCh37)
Canonical SPDI:: NC_000009.12:61854213:C:G,NC_000009.12:61854213:C:T
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.003/49 (ALFA)
C=0./0 (SGDP_PRJ)
G=0.00112/2 (Korea1K)
T=0.02411/404 (TOMMO)
T=0.02513/70 (KOREAN)
HGVS:: NC_000009.12:g.61854214C>G, NC_000009.12:g.61854214C>T, NC_000009.11:g.44990366C>G, NC_000009.11:g.44990366C>T, NR_024060.3:n.131C>G, NR_024060.3:n.131C>T, NR_027421.1:n.131C>G, NR_027421.1:n.131C>T

Select item 148123445719.

rs1481234457 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:61854105 (GRCh38)
9:44990257 (GRCh37)
Canonical SPDI:: NC_000009.12:61854104:G:A
Gene:: FAM27C (Varview), FAM27E4 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.61854105G>A, NC_000009.11:g.44990257G>A, NR_024060.3:n.22G>A, NR_027421.1:n.22G>A

Select item 148120824420.

rs1481208244 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:61852852 (GRCh38)
9:44989004 (GRCh37)
Canonical SPDI:: NC_000009.12:61852851:G:C
Gene:: FAM27C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.00008/1 (ALFA)
HGVS:: NC_000009.12:g.61852852G>C, NC_000009.11:g.44989004G>C

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