SNP Links for Gene (Select 100132074) - SNP

Links from Gene

Items: 1 to 20 of 5414

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Select item 14913980471.

rs1491398047 [Homo sapiens]

Variant type:: INS
Alleles:: ->AAAGAGGAAAA [Show Flanks]
Chromosome:: 1:41375493 (GRCh38)
1:41841166 (GRCh37)
Canonical SPDI:: NC_000001.11:41375493::AAAGAGGAAAA
Gene:: FOXO6 (Varview), FOXO6-AS1 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000001.11:g.41375493_41375494insAAAGAGGAAAA, NC_000001.10:g.41841165_41841166insAAAGAGGAAAA, NW_009646194.1:g.125198_125199insAAAGAGGAAAA

Select item 14910614642.

rs1491061464 [Homo sapiens]

Variant type:: INS
Alleles:: ->GCCCGCCTACTTCGGCGGCTGCA [Show Flanks]
Chromosome:: 1:41382210 (GRCh38)
1:41847883 (GRCh37)
Canonical SPDI:: NC_000001.11:41382210::GCCCGCCTACTTCGGCGGCTGCA
Gene:: FOXO6 (Varview)
Functional Consequence:: frameshift_variant,splice_donor_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: GCCCGCCTACTTCGGCGGCTGCA=0.00233/31 (TOMMO)
HGVS:: NC_000001.11:g.41382210_41382211insGCCCGCCTACTTCGGCGGCTGCA, NC_000001.10:g.41847882_41847883insGCCCGCCTACTTCGGCGGCTGCA, NW_009646194.1:g.132106_132107insGCCCGCCTACTTCGGCGGCTGCA, NM_001291281.3:c.1209_1210insGCCCGCCTACTTCGGCGGCTGCA, NM_001291281.2:c.1209_1210insGCCCGCCTACTTCGGCGGCTGCA, NM_001291281.1:c.1008_1009insGCCCGCCTACTTCGGCGGCTGCA, NP_001278210.2:p.Arg404fs

Select item 14909687373.

rs1490968737 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:41378399 (GRCh38)
1:41844071 (GRCh37)
Canonical SPDI:: NC_000001.11:41378398:C:G
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.41378399C>G, NC_000001.10:g.41844071C>G, NW_009646194.1:g.128104C>G

Select item 14909469944.

rs1490946994 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:41380364 (GRCh38)
1:41846036 (GRCh37)
Canonical SPDI:: NC_000001.11:41380363:C:A,NC_000001.11:41380363:C:T
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.41380364C>A, NC_000001.11:g.41380364C>T, NC_000001.10:g.41846036C>A, NC_000001.10:g.41846036C>T, NW_009646194.1:g.130059C>A, NW_009646194.1:g.130059C>T

Select item 14909321115.

rs1490932111 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 1:41383061 (GRCh38)
1:41848733 (GRCh37)
Canonical SPDI:: NC_000001.11:41383060:A:
Gene:: FOXO6 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.41383061del, NC_000001.10:g.41848733del, NW_009646194.1:g.132957del, NM_001291281.3:c.*380del, NM_001291281.2:c.*380del, NM_001291281.1:c.*380del

Select item 14908891226.

rs1490889122 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:41362457 (GRCh38)
1:41828129 (GRCh37)
Canonical SPDI:: NC_000001.11:41362456:C:T
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.41362457C>T, NC_000001.10:g.41828129C>T, NW_009646194.1:g.112130C>T

Select item 14908587047.

rs1490858704 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:41362386 (GRCh38)
1:41828058 (GRCh37)
Canonical SPDI:: NC_000001.11:41362385:G:C
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.41362386G>C, NC_000001.10:g.41828058G>C, NW_009646194.1:g.112059G>C

Select item 14907415848.

rs1490741584 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGCAGC [Show Flanks]
Chromosome:: 1:41361496 (GRCh38)
1:41827169 (GRCh37)
Canonical SPDI:: NC_000001.11:41361496:GCGGCAGC:GCGGCAGCGGCAGC
Gene:: FOXO6 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGGCAGCGGCAGC=0./0 (ALFA)
GCGGCA=0.000015/2 (GnomAD)
GCGGCA=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.41361499_41361504dup, NC_000001.10:g.41827171_41827176dup, NW_009646194.1:g.111172_111177dup, NM_001291281.3:c.-432_-427dup

Select item 14906188129.

rs1490618812 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:41382597 (GRCh38)
1:41848269 (GRCh37)
Canonical SPDI:: NC_000001.11:41382596:C:T
Gene:: FOXO6 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
HGVS:: NC_000001.11:g.41382597C>T, NC_000001.10:g.41848269C>T, NW_009646194.1:g.132493C>T, NM_001291281.3:c.1596C>T, NM_001291281.2:c.1596C>T, NM_001291281.1:c.1395C>T

Select item 149054535110.

rs1490545351 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:41371232 (GRCh38)
1:41836904 (GRCh37)
Canonical SPDI:: NC_000001.11:41371231:G:A
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.41371232G>A, NC_000001.10:g.41836904G>A, NW_009646194.1:g.120961G>A

Select item 149051112111.

rs1490511121 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:41363817 (GRCh38)
1:41829489 (GRCh37)
Canonical SPDI:: NC_000001.11:41363816:C:G
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.41363817C>G, NC_000001.10:g.41829489C>G, NW_009646194.1:g.113481C>G

Select item 149027816412.

rs1490278164 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:41370707 (GRCh38)
1:41836379 (GRCh37)
Canonical SPDI:: NC_000001.11:41370706:T:C
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.41370707T>C, NC_000001.10:g.41836379T>C, NW_009646194.1:g.120436T>C

Select item 149001828113.

rs1490018281 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:41364407 (GRCh38)
1:41830079 (GRCh37)
Canonical SPDI:: NC_000001.11:41364406:A:G
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.41364407A>G, NC_000001.10:g.41830079A>G, NW_009646194.1:g.114071A>G

Select item 148996467714.

rs1489964677 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:41380528 (GRCh38)
1:41846200 (GRCh37)
Canonical SPDI:: NC_000001.11:41380527:G:A
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.41380528G>A, NC_000001.10:g.41846200G>A, NW_009646194.1:g.130223G>A

Select item 148977961015.

rs1489779610 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:41371223 (GRCh38)
1:41836895 (GRCh37)
Canonical SPDI:: NC_000001.11:41371222:T:C
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.41371223T>C, NC_000001.10:g.41836895T>C, NW_009646194.1:g.120952T>C

Select item 148973025716.

rs1489730257 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:41364434 (GRCh38)
1:41830106 (GRCh37)
Canonical SPDI:: NC_000001.11:41364433:G:A
Gene:: FOXO6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.41364434G>A, NC_000001.10:g.41830106G>A, NW_009646194.1:g.114098G>A

Select item 148954845417.

rs1489548454 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:41376158 (GRCh38)
1:41841830 (GRCh37)
Canonical SPDI:: NC_000001.11:41376157:G:C
Gene:: FOXO6 (Varview), FOXO6-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.41376158G>C, NC_000001.10:g.41841830G>C, NW_009646194.1:g.125863G>C

Select item 148953906018.

rs1489539060 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:41382652 (GRCh38)
1:41848324 (GRCh37)
Canonical SPDI:: NC_000001.11:41382651:C:G,NC_000001.11:41382651:C:T
Gene:: FOXO6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.41382652C>G, NC_000001.11:g.41382652C>T, NC_000001.10:g.41848324C>G, NC_000001.10:g.41848324C>T, NW_009646194.1:g.132548C>G, NW_009646194.1:g.132548C>T, NM_001291281.3:c.1651C>G, NM_001291281.3:c.1651C>T, NM_001291281.2:c.1651C>G, NM_001291281.2:c.1651C>T, NM_001291281.1:c.1450C>G, NM_001291281.1:c.1450C>T, NP_001278210.2:p.Pro551Ala, NP_001278210.2:p.Pro551Ser

Select item 148950644919.

rs1489506449 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:41381793 (GRCh38)
1:41847465 (GRCh37)
Canonical SPDI:: NC_000001.11:41381792:G:C
Gene:: FOXO6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000007/1 (GnomAD_exomes)
C=0.000011/3 (TOPMED)
C=0.00463/1 (Vietnamese)
HGVS:: NC_000001.11:g.41381793G>C, NC_000001.10:g.41847465G>C, NW_009646194.1:g.131489G>C, NM_001291281.3:c.592G>C, NM_001291281.2:c.592G>C, NM_001291281.1:c.592G>C, NP_001278210.2:p.Ala198Pro

Select item 148922253920.

rs1489222539 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:41376822 (GRCh38)
1:41842494 (GRCh37)
Canonical SPDI:: NC_000001.11:41376821:A:G
Gene:: FOXO6 (Varview), FOXO6-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.41376822A>G, NC_000001.10:g.41842494A>G, NW_009646194.1:g.126527A>G

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