SNP Links for Gene (Select 100129917) - SNP

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Select item 14914628501.

rs1491462850 has merged into rs869049813 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>-,C [Show Flanks]
Chromosome:: 4:783826 (GRCh38)
4:777614 (GRCh37)
Canonical SPDI:: NC_000004.12:783823:CCCC:CC,NC_000004.12:783823:CCCC:CCC
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCC=0./0 (ALFA)
-=0.00058/1 (Korea1K)
HGVS:: NC_000004.12:g.783826_783827del, NC_000004.12:g.783827del, NC_000004.11:g.777614_777615del, NC_000004.11:g.777615del

Select item 14909966192.

rs1490996619 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:781257 (GRCh38)
4:775045 (GRCh37)
Canonical SPDI:: NC_000004.12:781256:T:C
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.781257T>C, NC_000004.11:g.775045T>C, NR_036511.1:n.592A>G

Select item 14899997873.

rs1489999787 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 4:781193 (GRCh38)
4:774981 (GRCh37)
Canonical SPDI:: NC_000004.12:781192:C:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
HGVS:: NC_000004.12:g.781193C>A, NC_000004.11:g.774981C>A, NR_036511.1:n.656G>T

Select item 14889781944.

rs1488978194 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:780692 (GRCh38)
4:774480 (GRCh37)
Canonical SPDI:: NC_000004.12:780691:G:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000021/3 (GnomAD)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000004.12:g.780692G>A, NC_000004.11:g.774480G>A, NR_036511.1:n.1157C>T

Select item 14882395855.

rs1488239585 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:783267 (GRCh38)
4:777055 (GRCh37)
Canonical SPDI:: NC_000004.12:783266:C:T
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.783267C>T, NC_000004.11:g.777055C>T

Select item 14877503086.

rs1487750308 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:781469 (GRCh38)
4:775257 (GRCh37)
Canonical SPDI:: NC_000004.12:781468:G:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.781469G>A, NC_000004.11:g.775257G>A, NR_036511.1:n.380C>T

Select item 14870405837.

rs1487040583 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 4:781851 (GRCh38)
4:775639 (GRCh37)
Canonical SPDI:: NC_000004.12:781850:G:A,NC_000004.12:781850:G:C
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000004.12:g.781851G>A, NC_000004.12:g.781851G>C, NC_000004.11:g.775639G>A, NC_000004.11:g.775639G>C

Select item 14868322218.

rs1486832221 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCT>- [Show Flanks]
Chromosome:: 4:779879 (GRCh38)
4:773667 (GRCh37)
Canonical SPDI:: NC_000004.12:779873:CTCCTCCT:CTCCT
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCCT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.779876CCT[1], NC_000004.11:g.773664CCT[1]

Select item 14867434999.

rs1486743499 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:782020 (GRCh38)
4:775808 (GRCh37)
Canonical SPDI:: NC_000004.12:782019:G:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000004.12:g.782020G>A, NC_000004.11:g.775808G>A

Select item 148618718310.

rs1486187183 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 4:782343 (GRCh38)
4:776131 (GRCh37)
Canonical SPDI:: NC_000004.12:782342:C:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000004.12:g.782343C>A, NC_000004.11:g.776131C>A

Select item 148508957411.

rs1485089574 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:780421 (GRCh38)
4:774209 (GRCh37)
Canonical SPDI:: NC_000004.12:780420:C:G
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.780421C>G, NC_000004.11:g.774209C>G, NR_036511.1:n.1428G>C, NR_036512.1:n.345G>C

Select item 148473537012.

rs1484735370 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:781005 (GRCh38)
4:774793 (GRCh37)
Canonical SPDI:: NC_000004.12:781004:G:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.781005G>A, NC_000004.11:g.774793G>A, NR_036511.1:n.844C>T

Select item 148431701213.

rs1484317012 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 4:781533 (GRCh38)
4:775321 (GRCh37)
Canonical SPDI:: NC_000004.12:781532:GGGGG:GGGG
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGGG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000004.12:g.781537del, NC_000004.11:g.775325del, NR_036511.1:n.316del

Select item 148394329514.

rs1483943295 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 4:783289 (GRCh38)
4:777078 (GRCh37)
Canonical SPDI:: NC_000004.12:783289:AA:AAA
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000004.12:g.783291dup, NC_000004.11:g.777079dup

Select item 148352466815.

rs1483524668 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:783385 (GRCh38)
4:777173 (GRCh37)
Canonical SPDI:: NC_000004.12:783384:T:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.783385T>A, NC_000004.11:g.777173T>A

Select item 148253941916.

rs1482539419 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:783045 (GRCh38)
4:776833 (GRCh37)
Canonical SPDI:: NC_000004.12:783044:G:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
HGVS:: NC_000004.12:g.783045G>A, NC_000004.11:g.776833G>A

Select item 148234017017.

rs1482340170 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:783684 (GRCh38)
4:777472 (GRCh37)
Canonical SPDI:: NC_000004.12:783683:G:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000004.12:g.783684G>A, NC_000004.11:g.777472G>A

Select item 148143416018.

rs1481434160 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:781204 (GRCh38)
4:774992 (GRCh37)
Canonical SPDI:: NC_000004.12:781203:G:A
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000019/1 (GnomAD_exomes)
HGVS:: NC_000004.12:g.781204G>A, NC_000004.11:g.774992G>A, NR_036511.1:n.645C>T

Select item 148108041719.

rs1481080417 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 4:779655 (GRCh38)
4:773443 (GRCh37)
Canonical SPDI:: NC_000004.12:779654:A:T
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.779655A>T, NC_000004.11:g.773443A>T

Select item 148097842020.

rs1480978420 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:781330 (GRCh38)
4:775118 (GRCh37)
Canonical SPDI:: NC_000004.12:781329:C:G
Gene:: PCGF3-AS1 (Varview), LOC124900163 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000004.12:g.781330C>G, NC_000004.11:g.775118C>G, NR_036511.1:n.519G>C

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