SNP Links for Gene (Select 100129396) - SNP

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Select item 14905816431.

rs1490581643 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:16790794 (GRCh38)
17:16694108 (GRCh37)
Canonical SPDI:: NC_000017.11:16790793:T:C
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000169/2 (ALFA)
C=0.000043/6 (GnomAD)
HGVS:: NC_000017.11:g.16790794T>C, NC_000017.10:g.16694108T>C

Select item 14902388452.

rs1490238845 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGAAG>- [Show Flanks]
Chromosome:: 17:16789635 (GRCh38)
17:16692949 (GRCh37)
Canonical SPDI:: NC_000017.11:16789631:AAGTGAAG:AAG
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AAG=0./0 (ALFA)
HGVS:: NC_000017.11:g.16789635_16789639del, NC_000017.10:g.16692949_16692953del, NR_026810.1:n.893_897del, NM_001348162.1:c.*225_*229del, NR_170993.1:n.757_761del

Select item 14897177393.

rs1489717739 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 17:16790020 (GRCh38)
17:16693334 (GRCh37)
Canonical SPDI:: NC_000017.11:16790019:G:A,NC_000017.11:16790019:G:T
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.16790020G>A, NC_000017.11:g.16790020G>T, NC_000017.10:g.16693334G>A, NC_000017.10:g.16693334G>T, NR_026810.1:n.1278G>A, NR_026810.1:n.1278G>T, NM_001348162.1:c.*610G>A, NM_001348162.1:c.*610G>T, NR_170993.1:n.1142G>A, NR_170993.1:n.1142G>T

Select item 14881207274.

rs1488120727 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:16787965 (GRCh38)
17:16691279 (GRCh37)
Canonical SPDI:: NC_000017.11:16787964:C:G,NC_000017.11:16787964:C:T
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000036/5 (GnomAD)
HGVS:: NC_000017.11:g.16787965C>G, NC_000017.11:g.16787965C>T, NC_000017.10:g.16691279C>G, NC_000017.10:g.16691279C>T, NG_001591.2:g.375G>C, NG_001591.2:g.375G>A, NR_003190.2:n.262C>G, NR_003190.2:n.262C>T

Select item 14880035975.

rs1488003597 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 14873604316.

rs1487360431 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:16790749 (GRCh38)
17:16694063 (GRCh37)
Canonical SPDI:: NC_000017.11:16790748:C:G,NC_000017.11:16790748:C:T
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000017.11:g.16790749C>G, NC_000017.11:g.16790749C>T, NC_000017.10:g.16694063C>G, NC_000017.10:g.16694063C>T

Select item 14871148987.

rs1487114898 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:16789895 (GRCh38)
17:16693209 (GRCh37)
Canonical SPDI:: NC_000017.11:16789894:A:T
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000253/3 (ALFA)
T=0.000128/18 (GnomAD)
T=0.000177/3 (TOMMO)
T=0.001027/3 (KOREAN)
HGVS:: NC_000017.11:g.16789895A>T, NC_000017.10:g.16693209A>T, NR_026810.1:n.1153A>T, NM_001348162.1:c.*485A>T, NR_170993.1:n.1017A>T

Select item 14869138508.

rs1486913850 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:16790651 (GRCh38)
17:16693965 (GRCh37)
Canonical SPDI:: NC_000017.11:16790650:G:A
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
HGVS:: NC_000017.11:g.16790651G>A, NC_000017.10:g.16693965G>A

Select item 14868011029.

rs1486801102 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:16790828 (GRCh38)
17:16694142 (GRCh37)
Canonical SPDI:: NC_000017.11:16790827:C:T
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000312/2 (1000Genomes)
HGVS:: NC_000017.11:g.16790828C>T, NC_000017.10:g.16694142C>T

Select item 148581895310.

rs1485818953 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:16787685 (GRCh38)
17:16690999 (GRCh37)
Canonical SPDI:: NC_000017.11:16787684:C:A
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.16787685C>A, NC_000017.10:g.16690999C>A, NG_001591.2:g.655G>T

Select item 148499945711.

rs1484999457 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:16788839 (GRCh38)
17:16692153 (GRCh37)
Canonical SPDI:: NC_000017.11:16788838:A:G
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.16788839A>G, NC_000017.10:g.16692153A>G, NR_026810.1:n.97A>G, NM_001348162.1:c.-62A>G

Select item 148479024812.

rs1484790248 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:16787435 (GRCh38)
17:16690749 (GRCh37)
Canonical SPDI:: NC_000017.11:16787434:G:A
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000022/3 (GnomAD)
HGVS:: NC_000017.11:g.16787435G>A, NC_000017.10:g.16690749G>A, NG_001591.2:g.905C>T

Select item 148476120013.

rs1484761200 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:16788103 (GRCh38)
17:16691417 (GRCh37)
Canonical SPDI:: NC_000017.11:16788102:C:T
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.16788103C>T, NC_000017.10:g.16691417C>T, NG_001591.2:g.237G>A, NR_003190.2:n.400C>T

Select item 148446219914.

rs1484462199 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:16788920 (GRCh38)
17:16692234 (GRCh37)
Canonical SPDI:: NC_000017.11:16788919:T:A
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.16788920T>A, NC_000017.10:g.16692234T>A, NR_026810.1:n.178T>A, NM_001348162.1:c.20T>A, NR_170993.1:n.42T>A

Select item 148358084315.

rs1483580843 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 17:16787560 (GRCh38)
17:16690874 (GRCh37)
Canonical SPDI:: NC_000017.11:16787559:CC:C
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
HGVS:: NC_000017.11:g.16787561del, NC_000017.10:g.16690875del, NG_001591.2:g.780del

Select item 148331608816.

rs1483316088 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:16790420 (GRCh38)
17:16693734 (GRCh37)
Canonical SPDI:: NC_000017.11:16790419:A:G
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.16790420A>G, NC_000017.10:g.16693734A>G, NR_026810.1:n.1678A>G, NM_001348162.1:c.*1010A>G, NR_170993.1:n.1542A>G

Select item 148328380217.

rs1483283802 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ACTT [Show Flanks]
Chromosome:: 17:16788331 (GRCh38)
17:16691646 (GRCh37)
Canonical SPDI:: NC_000017.11:16788331:ACTT:ACTTACTT
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACTTACTT=0./0 (ALFA)
ACTT=0.000011/3 (TOPMED)
ACTT=0.00005/7 (GnomAD)
HGVS:: NC_000017.11:g.16788332_16788335dup, NC_000017.10:g.16691646_16691649dup, NG_001591.2:g.5_8dup

Select item 148180448818.

rs1481804488 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:16789091 (GRCh38)
17:16692405 (GRCh37)
Canonical SPDI:: NC_000017.11:16789090:C:A
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.16789091C>A, NC_000017.10:g.16692405C>A, NR_026810.1:n.349C>A, NM_001348162.1:c.191C>A, NR_170993.1:n.213C>A

Select item 148105042019.

rs1481050420 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:16787328 (GRCh38)
17:16690642 (GRCh37)
Canonical SPDI:: NC_000017.11:16787327:A:G
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000017.11:g.16787328A>G, NC_000017.10:g.16690642A>G, NG_001591.2:g.1012T>C

Select item 148082083320.

rs1480820833 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 17:16789608 (GRCh38)
17:16692922 (GRCh37)
Canonical SPDI:: NC_000017.11:16789607:G:C,NC_000017.11:16789607:G:T
Gene:: USP32P1 (Varview), FAM106C (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.16789608G>C, NC_000017.11:g.16789608G>T, NC_000017.10:g.16692922G>C, NC_000017.10:g.16692922G>T, NR_026810.1:n.866G>C, NR_026810.1:n.866G>T, NM_001348162.1:c.*198G>C, NM_001348162.1:c.*198G>T, NR_170993.1:n.730G>C, NR_170993.1:n.730G>T

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