SNP Links for Gene (Select 100128420) - SNP

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Select item 14909951741.

rs1490995174 has merged into rs747858648 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: X:136639226 (GRCh38)
X:135721385 (GRCh37)
Canonical SPDI:: NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000023.11:g.136639226_136639238del, NC_000023.11:g.136639227_136639238del, NC_000023.11:g.136639228_136639238del, NC_000023.11:g.136639229_136639238del, NC_000023.11:g.136639230_136639238del, NC_000023.11:g.136639231_136639238del, NC_000023.11:g.136639232_136639238del, NC_000023.11:g.136639233_136639238del, NC_000023.11:g.136639234_136639238del, NC_000023.11:g.136639235_136639238del, NC_000023.11:g.136639236_136639238del, NC_000023.11:g.136639237_136639238del, NC_000023.11:g.136639238del, NC_000023.11:g.136639238dup, NC_000023.11:g.136639237_136639238dup, NC_000023.11:g.136639236_136639238dup, NC_000023.11:g.136639235_136639238dup, NC_000023.11:g.136639234_136639238dup, NC_000023.11:g.136639233_136639238dup, NC_000023.11:g.136639224_136639238dup, NC_000023.11:g.136639238_136639239insAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000023.10:g.135721385_135721397del, NC_000023.10:g.135721386_135721397del, NC_000023.10:g.135721387_135721397del, NC_000023.10:g.135721388_135721397del, NC_000023.10:g.135721389_135721397del, NC_000023.10:g.135721390_135721397del, NC_000023.10:g.135721391_135721397del, NC_000023.10:g.135721392_135721397del, NC_000023.10:g.135721393_135721397del, NC_000023.10:g.135721394_135721397del, NC_000023.10:g.135721395_135721397del, NC_000023.10:g.135721396_135721397del, NC_000023.10:g.135721397del, NC_000023.10:g.135721397dup, NC_000023.10:g.135721396_135721397dup, NC_000023.10:g.135721395_135721397dup, NC_000023.10:g.135721394_135721397dup, NC_000023.10:g.135721393_135721397dup, NC_000023.10:g.135721392_135721397dup, NC_000023.10:g.135721383_135721397dup, NC_000023.10:g.135721397_135721398insAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14892292242.

rs1489229224 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:136641168 (GRCh38)
X:135723327 (GRCh37)
Canonical SPDI:: NC_000023.11:136641167:A:C
Gene:: LINC00892 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.136641168A>C, NC_000023.10:g.135723327A>C

Select item 14885663973.

rs1488566397 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:136641229 (GRCh38)
X:135723388 (GRCh37)
Canonical SPDI:: NC_000023.11:136641228:G:A,NC_000023.11:136641228:G:T
Gene:: LINC00892 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136641229G>A, NC_000023.11:g.136641229G>T, NC_000023.10:g.135723388G>A, NC_000023.10:g.135723388G>T

Select item 14882622754.

rs1488262275 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:136637846 (GRCh38)
X:135720005 (GRCh37)
Canonical SPDI:: NC_000023.11:136637845:T:C
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136637846T>C, NC_000023.10:g.135720005T>C

Select item 14867227225.

rs1486722722 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:136639593 (GRCh38)
X:135721752 (GRCh37)
Canonical SPDI:: NC_000023.11:136639592:T:C
Gene:: LINC00892 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.136639593T>C, NC_000023.10:g.135721752T>C, NR_038461.1:n.51T>C, NR_038462.1:n.51T>C

Select item 14865691466.

rs1486569146 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:136638797 (GRCh38)
X:135720956 (GRCh37)
Canonical SPDI:: NC_000023.11:136638796:G:A
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/3 (GnomAD)
A=0.000083/22 (TOPMED)
HGVS:: NC_000023.11:g.136638797G>A, NC_000023.10:g.135720956G>A

Select item 14864848027.

rs1486484802 [Homo sapiens]

Variant type:: INS
Alleles:: ->CTTCT,CTTCTAAG [Show Flanks]
Chromosome:: X:136639285 (GRCh38)
X:135721445 (GRCh37)
Canonical SPDI:: NC_000023.11:136639285::CTTCT,NC_000023.11:136639285::CTTCTAAG
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CTTCTAAG=0./0 (ALFA)
CTTCT=0.000259/26 (GnomAD)
HGVS:: NC_000023.11:g.136639285_136639286insCTTCT, NC_000023.11:g.136639285_136639286insCTTCTAAG, NC_000023.10:g.135721444_135721445insCTTCT, NC_000023.10:g.135721444_135721445insCTTCTAAG

Select item 14859391328.

rs1485939132 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:136638222 (GRCh38)
X:135720381 (GRCh37)
Canonical SPDI:: NC_000023.11:136638221:A:T
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136638222A>T, NC_000023.10:g.135720381A>T

Select item 14851449349.

rs1485144934 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: X:136641386 (GRCh38)
X:135723545 (GRCh37)
Canonical SPDI:: NC_000023.11:136641385:T:A,NC_000023.11:136641385:T:C
Gene:: LINC00892 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (KOREAN)
HGVS:: NC_000023.11:g.136641386T>A, NC_000023.11:g.136641386T>C, NC_000023.10:g.135723545T>A, NC_000023.10:g.135723545T>C

Select item 148442378210.

rs1484423782 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:136642534 (GRCh38)
X:135724693 (GRCh37)
Canonical SPDI:: NC_000023.11:136642533:C:T
Gene:: LINC00892 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136642534C>T, NC_000023.10:g.135724693C>T

Select item 148372353711.

rs1483723537 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:136639570 (GRCh38)
X:135721729 (GRCh37)
Canonical SPDI:: NC_000023.11:136639569:G:C
Gene:: LINC00892 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136639570G>C, NC_000023.10:g.135721729G>C, NR_038461.1:n.28G>C, NR_038462.1:n.28G>C

Select item 148359289812.

rs1483592898 has merged into rs747858648 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: X:136639226 (GRCh38)
X:135721385 (GRCh37)
Canonical SPDI:: NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:136639214:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000023.11:g.136639226_136639238del, NC_000023.11:g.136639227_136639238del, NC_000023.11:g.136639228_136639238del, NC_000023.11:g.136639229_136639238del, NC_000023.11:g.136639230_136639238del, NC_000023.11:g.136639231_136639238del, NC_000023.11:g.136639232_136639238del, NC_000023.11:g.136639233_136639238del, NC_000023.11:g.136639234_136639238del, NC_000023.11:g.136639235_136639238del, NC_000023.11:g.136639236_136639238del, NC_000023.11:g.136639237_136639238del, NC_000023.11:g.136639238del, NC_000023.11:g.136639238dup, NC_000023.11:g.136639237_136639238dup, NC_000023.11:g.136639236_136639238dup, NC_000023.11:g.136639235_136639238dup, NC_000023.11:g.136639234_136639238dup, NC_000023.11:g.136639233_136639238dup, NC_000023.11:g.136639224_136639238dup, NC_000023.11:g.136639238_136639239insAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000023.10:g.135721385_135721397del, NC_000023.10:g.135721386_135721397del, NC_000023.10:g.135721387_135721397del, NC_000023.10:g.135721388_135721397del, NC_000023.10:g.135721389_135721397del, NC_000023.10:g.135721390_135721397del, NC_000023.10:g.135721391_135721397del, NC_000023.10:g.135721392_135721397del, NC_000023.10:g.135721393_135721397del, NC_000023.10:g.135721394_135721397del, NC_000023.10:g.135721395_135721397del, NC_000023.10:g.135721396_135721397del, NC_000023.10:g.135721397del, NC_000023.10:g.135721397dup, NC_000023.10:g.135721396_135721397dup, NC_000023.10:g.135721395_135721397dup, NC_000023.10:g.135721394_135721397dup, NC_000023.10:g.135721393_135721397dup, NC_000023.10:g.135721392_135721397dup, NC_000023.10:g.135721383_135721397dup, NC_000023.10:g.135721397_135721398insAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 148262148613.

rs1482621486 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:136638656 (GRCh38)
X:135720815 (GRCh37)
Canonical SPDI:: NC_000023.11:136638655:T:C
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136638656T>C, NC_000023.10:g.135720815T>C

Select item 148261544314.

rs1482615443 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:136638579 (GRCh38)
X:135720738 (GRCh37)
Canonical SPDI:: NC_000023.11:136638578:T:C
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.136638579T>C, NC_000023.10:g.135720738T>C

Select item 148176530715.

rs1481765307 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:136638373 (GRCh38)
X:135720532 (GRCh37)
Canonical SPDI:: NC_000023.11:136638372:A:T
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.136638373A>T, NC_000023.10:g.135720532A>T

Select item 148170300716.

rs1481703007 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:136639234 (GRCh38)
X:135721393 (GRCh37)
Canonical SPDI:: NC_000023.11:136639233:A:C
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000059/6 (GnomAD)
C=0.000076/20 (TOPMED)
HGVS:: NC_000023.11:g.136639234A>C, NC_000023.10:g.135721393A>C

Select item 148160063917.

rs1481600639 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:136637889 (GRCh38)
X:135720048 (GRCh37)
Canonical SPDI:: NC_000023.11:136637888:G:A,NC_000023.11:136637888:G:T
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
T=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.136637889G>A, NC_000023.11:g.136637889G>T, NC_000023.10:g.135720048G>A, NC_000023.10:g.135720048G>T

Select item 148124158218.

rs1481241582 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:136639160 (GRCh38)
X:135721319 (GRCh37)
Canonical SPDI:: NC_000023.11:136639159:G:A
Gene:: LINC00892 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136639160G>A, NC_000023.10:g.135721319G>A

Select item 148004171619.

rs1480041716 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:136641088 (GRCh38)
X:135723247 (GRCh37)
Canonical SPDI:: NC_000023.11:136641087:C:G
Gene:: LINC00892 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.136641088C>G, NC_000023.10:g.135723247C>G

Select item 147931823520.

rs1479318235 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:136640579 (GRCh38)
X:135722738 (GRCh37)
Canonical SPDI:: NC_000023.11:136640578:G:A
Gene:: LINC00892 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00002/2 (GnomAD)
HGVS:: NC_000023.11:g.136640579G>A, NC_000023.10:g.135722738G>A

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