SNP Links for Gene (Select 100128023) - SNP

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Select item 14914582591.

rs1491458259 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 3:193992816 (GRCh38)
3:193710605 (GRCh37)
Canonical SPDI:: NC_000003.12:193992809:AGAGAGAG:AGAGAG
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: AGAGAG=0./0 (ALFA)
HGVS:: NC_000003.12:g.193992810AG[3], NC_000003.11:g.193710599AG[3]

Select item 14911000072.

rs1491100007 has merged into rs1256586766 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAGAGG>-,AGAGAGGAGAGAGG [Show Flanks]
Chromosome:: 3:193992826 (GRCh38)
3:193710615 (GRCh37)
Canonical SPDI:: NC_000003.12:193992810:GAGAGAGGAGAGAGGAGAGAGG:GAGAGAGGAGAGAGG,NC_000003.12:193992810:GAGAGAGGAGAGAGGAGAGAGG:GAGAGAGGAGAGAGGAGAGAGGAGAGAGG
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGAGAGGAGAGAGGAGAGAGGAGAGAGG=0./0 (ALFA)
-=0.00007/1 (TOMMO)
HGVS:: NC_000003.12:g.193992812AGAGAGG[2], NC_000003.12:g.193992812AGAGAGG[4], NC_000003.11:g.193710601AGAGAGG[2], NC_000003.11:g.193710601AGAGAGG[4]

Select item 14901745893.

rs1490174589 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 3:193993205 (GRCh38)
3:193710994 (GRCh37)
Canonical SPDI:: NC_000003.12:193993204:G:
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.193993205del, NC_000003.11:g.193710994del, NR_027764.1:n.1034del

Select item 14891312224.

rs1489131222 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 3:193994132 (GRCh38)
3:193711921 (GRCh37)
Canonical SPDI:: NC_000003.12:193994131:G:A,NC_000003.12:193994131:G:T
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
T=0.000546/1 (Korea1K)
HGVS:: NC_000003.12:g.193994132G>A, NC_000003.12:g.193994132G>T, NC_000003.11:g.193711921G>A, NC_000003.11:g.193711921G>T, NR_027764.1:n.107C>T, NR_027764.1:n.107C>A

Select item 14877716665.

rs1487771666 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:193994180 (GRCh38)
3:193711969 (GRCh37)
Canonical SPDI:: NC_000003.12:193994179:A:G
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.193994180A>G, NC_000003.11:g.193711969A>G, NR_027764.1:n.59T>C

Select item 14868365616.

rs1486836561 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:193992780 (GRCh38)
3:193710569 (GRCh37)
Canonical SPDI:: NC_000003.12:193992779:A:G
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.193992780A>G, NC_000003.11:g.193710569A>G

Select item 14854560827.

rs1485456082 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:193993099 (GRCh38)
3:193710888 (GRCh37)
Canonical SPDI:: NC_000003.12:193993098:T:C
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.193993099T>C, NC_000003.11:g.193710888T>C, NR_027764.1:n.1140A>G

Select item 14843638508.

rs1484363850 has merged into rs1202287525 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGAGAG>-,GAGAGAGGAGAGAG [Show Flanks]
Chromosome:: 3:193992922 (GRCh38)
3:193710711 (GRCh37)
Canonical SPDI:: NC_000003.12:193992909:GAGAGGAGAGAGGAGAGAG:GAGAGGAGAGAG,NC_000003.12:193992909:GAGAGGAGAGAGGAGAGAG:GAGAGGAGAGAGGAGAGAGGAGAGAG
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GAGAGGAGAGAGGAGAGAGGAGAGAG=0./0 (ALFA)
GAGAGGA=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.193992915GAGAGAG[1], NC_000003.12:g.193992915GAGAGAG[3], NC_000003.11:g.193710704GAGAGAG[1], NC_000003.11:g.193710704GAGAGAG[3]

Select item 14843402659.

rs1484340265 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 3:193994133 (GRCh38)
3:193711923 (GRCh37)
Canonical SPDI:: NC_000003.12:193994133:A:AA
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0.000142/2 (ALFA)
A=0.000064/9 (GnomAD)
A=0.000136/36 (TOPMED)
HGVS:: NC_000003.12:g.193994134dup, NC_000003.11:g.193711923dup, NR_027764.1:n.105dup

Select item 148389014610.

rs1483890146 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:193993899 (GRCh38)
3:193711688 (GRCh37)
Canonical SPDI:: NC_000003.12:193993898:C:T
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.193993899C>T, NC_000003.11:g.193711688C>T, NR_027764.1:n.340G>A

Select item 148356452911.

rs1483564529 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:193993422 (GRCh38)
3:193711211 (GRCh37)
Canonical SPDI:: NC_000003.12:193993421:T:G
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.193993422T>G, NC_000003.11:g.193711211T>G, NR_027764.1:n.817A>C

Select item 148319312812.

rs1483193128 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:193995756 (GRCh38)
3:193713545 (GRCh37)
Canonical SPDI:: NC_000003.12:193995755:A:G
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.193995756A>G, NC_000003.11:g.193713545A>G

Select item 148290734413.

rs1482907344 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:193994297 (GRCh38)
3:193712086 (GRCh37)
Canonical SPDI:: NC_000003.12:193994296:G:A
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.193994297G>A, NC_000003.11:g.193712086G>A

Select item 148241659114.

rs1482416591 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:193994698 (GRCh38)
3:193712487 (GRCh37)
Canonical SPDI:: NC_000003.12:193994697:G:A
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.193994698G>A, NC_000003.11:g.193712487G>A

Select item 148135288915.

rs1481352889 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:193992962 (GRCh38)
3:193710751 (GRCh37)
Canonical SPDI:: NC_000003.12:193992961:A:G
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.193992962A>G, NC_000003.11:g.193710751A>G

Select item 148061447416.

rs1480614474 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:193995789 (GRCh38)
3:193713578 (GRCh37)
Canonical SPDI:: NC_000003.12:193995788:G:T
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.193995789G>T, NC_000003.11:g.193713578G>T

Select item 148013434317.

rs1480134343 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:193996025 (GRCh38)
3:193713814 (GRCh37)
Canonical SPDI:: NC_000003.12:193996024:A:G
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.193996025A>G, NC_000003.11:g.193713814A>G

Select item 147829872818.

rs1478298728 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:193994847 (GRCh38)
3:193712636 (GRCh37)
Canonical SPDI:: NC_000003.12:193994846:C:T
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.193994847C>T, NC_000003.11:g.193712636C>T

Select item 147765501319.

rs1477655013 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:193995668 (GRCh38)
3:193713457 (GRCh37)
Canonical SPDI:: NC_000003.12:193995667:C:T
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.193995668C>T, NC_000003.11:g.193713457C>T

Select item 147466641520.

rs1474666415 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:193993731 (GRCh38)
3:193711520 (GRCh37)
Canonical SPDI:: NC_000003.12:193993730:A:G
Gene:: LINC02026 (Varview), DPPA2P3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000064/9 (GnomAD)
G=0.000072/19 (TOPMED)
HGVS:: NC_000003.12:g.193993731A>G, NC_000003.11:g.193711520A>G, NR_027764.1:n.508T>C

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