SNP Links for Gene (Select 100126310) - SNP

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Select item 14907748951.

rs1490774895 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:28863229 (GRCh38)
9:28863227 (GRCh37)
Canonical SPDI:: NC_000009.12:28863228:A:G
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.28863229A>G, NC_000009.11:g.28863227A>G

Select item 14902332532.

rs1490233253 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:28863617 (GRCh38)
9:28863615 (GRCh37)
Canonical SPDI:: NC_000009.12:28863616:A:T
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by cluster
HGVS:: NC_000009.12:g.28863617A>T, NC_000009.11:g.28863615A>T

Select item 14870727043.

rs1487072704 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:28864542 (GRCh38)
9:28864540 (GRCh37)
Canonical SPDI:: NC_000009.12:28864541:G:C
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.28864542G>C, NC_000009.11:g.28864540G>C

Select item 14862704884.

rs1486270488 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:28863456 (GRCh38)
9:28863454 (GRCh37)
Canonical SPDI:: NC_000009.12:28863455:G:C
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.28863456G>C, NC_000009.11:g.28863454G>C

Select item 14861683065.

rs1486168306 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:28864382 (GRCh38)
9:28864380 (GRCh37)
Canonical SPDI:: NC_000009.12:28864381:T:A
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.28864382T>A, NC_000009.11:g.28864380T>A

Select item 14861336006.

rs1486133600 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:28863545 (GRCh38)
9:28863543 (GRCh37)
Canonical SPDI:: NC_000009.12:28863544:G:A,NC_000009.12:28863544:G:C
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.28863545G>A, NC_000009.12:g.28863545G>C, NC_000009.11:g.28863543G>A, NC_000009.11:g.28863543G>C

Select item 14841685247.

rs1484168524 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:28863689 (GRCh38)
9:28863687 (GRCh37)
Canonical SPDI:: NC_000009.12:28863688:G:T
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
HGVS:: NC_000009.12:g.28863689G>T, NC_000009.11:g.28863687G>T, NR_030597.1:n.18C>A

Select item 14838075228.

rs1483807522 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:28864306 (GRCh38)
9:28864304 (GRCh37)
Canonical SPDI:: NC_000009.12:28864305:G:T
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000009.12:g.28864306G>T, NC_000009.11:g.28864304G>T

Select item 14838004319.

rs1483800431 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:28865365 (GRCh38)
9:28865363 (GRCh37)
Canonical SPDI:: NC_000009.12:28865364:A:G
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.28865365A>G, NC_000009.11:g.28865363A>G

Select item 148292454310.

rs1482924543 [Homo sapiens]

Variant type:: DELINS
Alleles:: AATAATGAG>- [Show Flanks]
Chromosome:: 9:28865290 (GRCh38)
9:28865288 (GRCh37)
Canonical SPDI:: NC_000009.12:28865287:AGAATAATGAG:AG
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.28865290_28865298del, NC_000009.11:g.28865288_28865296del

Select item 148282870511.

rs1482828705 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:28863219 (GRCh38)
9:28863217 (GRCh37)
Canonical SPDI:: NC_000009.12:28863218:C:G
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.28863219C>G, NC_000009.11:g.28863217C>G

Select item 148194325612.

rs1481943256 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:28864943 (GRCh38)
9:28864941 (GRCh37)
Canonical SPDI:: NC_000009.12:28864942:G:A,NC_000009.12:28864942:G:C
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.28864943G>A, NC_000009.12:g.28864943G>C, NC_000009.11:g.28864941G>A, NC_000009.11:g.28864941G>C

Select item 148180040113.

rs1481800401 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:28863921 (GRCh38)
9:28863919 (GRCh37)
Canonical SPDI:: NC_000009.12:28863920:C:T
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.28863921C>T, NC_000009.11:g.28863919C>T

Select item 148036160214.

rs1480361602 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:28864362 (GRCh38)
9:28864360 (GRCh37)
Canonical SPDI:: NC_000009.12:28864361:T:C
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.28864362T>C, NC_000009.11:g.28864360T>C

Select item 148031087015.

rs1480310870 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:28863310 (GRCh38)
9:28863308 (GRCh37)
Canonical SPDI:: NC_000009.12:28863309:A:C
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.28863310A>C, NC_000009.11:g.28863308A>C

Select item 147885089316.

rs1478850893 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:28863166 (GRCh38)
9:28863164 (GRCh37)
Canonical SPDI:: NC_000009.12:28863165:T:C
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.28863166T>C, NC_000009.11:g.28863164T>C

Select item 147818980217.

rs1478189802 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:28864870 (GRCh38)
9:28864868 (GRCh37)
Canonical SPDI:: NC_000009.12:28864869:T:A
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.28864870T>A, NC_000009.11:g.28864868T>A

Select item 147710102418.

rs1477101024 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:28865284 (GRCh38)
9:28865282 (GRCh37)
Canonical SPDI:: NC_000009.12:28865283:C:T
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.28865284C>T, NC_000009.11:g.28865282C>T

Select item 147573955719.

rs1475739557 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:28863622 (GRCh38)
9:28863620 (GRCh37)
Canonical SPDI:: NC_000009.12:28863621:C:T
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.28863622C>T, NC_000009.11:g.28863620C>T

Select item 147487789920.

rs1474877899 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:28864049 (GRCh38)
9:28864047 (GRCh37)
Canonical SPDI:: NC_000009.12:28864048:T:C
Gene:: LINGO2 (Varview), MIR876 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.28864049T>C, NC_000009.11:g.28864047T>C

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