SNP Links for Gene (Select 100033811) - SNP

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Select item 14904370711.

rs1490437071 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:25236445 (GRCh38)
15:25481592 (GRCh37)
Canonical SPDI:: NC_000015.10:25236444:C:A,NC_000015.10:25236444:C:T
Gene:: SNORD115-36 (Varview), SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
T=0.00004/1 (TOMMO)
HGVS:: NC_000015.10:g.25236445C>A, NC_000015.10:g.25236445C>T, NC_000015.9:g.25481592C>A, NC_000015.9:g.25481592C>T, NG_002690.1:g.455536C>A, NG_002690.1:g.455536C>T, NR_146177.1:n.16103C>A, NR_146177.1:n.16103C>T

Select item 14901576752.

rs1490157675 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25236611 (GRCh38)
15:25481758 (GRCh37)
Canonical SPDI:: NC_000015.10:25236610:C:T
Gene:: SNORD115-36 (Varview), SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25236611C>T, NC_000015.9:g.25481758C>T, NG_002690.1:g.455702C>T

Select item 14870611213.

rs1487061121 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25237348 (GRCh38)
15:25482495 (GRCh37)
Canonical SPDI:: NC_000015.10:25237347:T:C
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.25237348T>C, NC_000015.9:g.25482495T>C, NG_002690.1:g.456439T>C

Select item 14868055974.

rs1486805597 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25237063 (GRCh38)
15:25482210 (GRCh37)
Canonical SPDI:: NC_000015.10:25237062:G:T
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25237063G>T, NC_000015.9:g.25482210G>T, NG_002690.1:g.456154G>T

Select item 14858463255.

rs1485846325 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 15:25236005 (GRCh38)
15:25481153 (GRCh37)
Canonical SPDI:: NC_000015.10:25236005::G
Gene:: SNORD115-36 (Varview), SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000093/13 (GnomAD)
HGVS:: NC_000015.10:g.25236005_25236006insG, NC_000015.9:g.25481152_25481153insG, NG_002690.1:g.455096_455097insG

Select item 14820850326.

rs1482085032 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25237783 (GRCh38)
15:25482930 (GRCh37)
Canonical SPDI:: NC_000015.10:25237782:C:T
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.25237783C>T, NC_000015.9:g.25482930C>T, NG_002690.1:g.456874C>T

Select item 14815702887.

rs1481570288 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25237950 (GRCh38)
15:25483097 (GRCh37)
Canonical SPDI:: NC_000015.10:25237949:C:T
Gene:: SNORD115-37 (Varview), SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25237950C>T, NC_000015.9:g.25483097C>T, NG_002690.1:g.457041C>T

Select item 14811093058.

rs1481109305 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:25236360 (GRCh38)
15:25481507 (GRCh37)
Canonical SPDI:: NC_000015.10:25236359:A:T
Gene:: SNORD115-36 (Varview), SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25236360A>T, NC_000015.9:g.25481507A>T, NG_002690.1:g.455451A>T

Select item 14795940029.

rs1479594002 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:25238155 (GRCh38)
15:25483302 (GRCh37)
Canonical SPDI:: NC_000015.10:25238154:C:A,NC_000015.10:25238154:C:T
Gene:: SNORD115-37 (Varview), SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25238155C>A, NC_000015.10:g.25238155C>T, NC_000015.9:g.25483302C>A, NC_000015.9:g.25483302C>T, NG_002690.1:g.457246C>A, NG_002690.1:g.457246C>T

Select item 147606748010.

rs1476067480 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCACATCCACAGTGGCAGGGTCTTG>- [Show Flanks]
Chromosome:: 15:25237182 (GRCh38)
15:25482329 (GRCh37)
Canonical SPDI:: NC_000015.10:25237180:GTCACATCCACAGTGGCAGGGTCTTG:G
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25237182_25237206del, NC_000015.9:g.25482329_25482353del, NG_002690.1:g.456273_456297del

Select item 147573006611.

rs1475730066 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 15:25236752 (GRCh38)
15:25481899 (GRCh37)
Canonical SPDI:: NC_000015.10:25236751:GGGGGG:GGGGG
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GGGGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25236757del, NC_000015.9:g.25481904del, NG_002690.1:g.455848del

Select item 147506985712.

rs1475069857 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25236968 (GRCh38)
15:25482115 (GRCh37)
Canonical SPDI:: NC_000015.10:25236967:G:A
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25236968G>A, NC_000015.9:g.25482115G>A, NG_002690.1:g.456059G>A

Select item 147243406313.

rs1472434063 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25236017 (GRCh38)
15:25481164 (GRCh37)
Canonical SPDI:: NC_000015.10:25236016:C:T
Gene:: SNORD115-36 (Varview), SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25236017C>T, NC_000015.9:g.25481164C>T, NG_002690.1:g.455108C>T

Select item 147098175514.

rs1470981755 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25236917 (GRCh38)
15:25482064 (GRCh37)
Canonical SPDI:: NC_000015.10:25236916:C:T
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25236917C>T, NC_000015.9:g.25482064C>T, NG_002690.1:g.456008C>T

Select item 147063222015.

rs1470632220 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25237107 (GRCh38)
15:25482254 (GRCh37)
Canonical SPDI:: NC_000015.10:25237106:C:T
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.25237107C>T, NC_000015.9:g.25482254C>T, NG_002690.1:g.456198C>T

Select item 146997797116.

rs1469977971 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25236812 (GRCh38)
15:25481959 (GRCh37)
Canonical SPDI:: NC_000015.10:25236811:G:A
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25236812G>A, NC_000015.9:g.25481959G>A, NG_002690.1:g.455903G>A

Select item 146905029017.

rs1469050290 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25237099 (GRCh38)
15:25482246 (GRCh37)
Canonical SPDI:: NC_000015.10:25237098:G:T
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25237099G>T, NC_000015.9:g.25482246G>T, NG_002690.1:g.456190G>T

Select item 146854180318.

rs1468541803 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25236921 (GRCh38)
15:25482068 (GRCh37)
Canonical SPDI:: NC_000015.10:25236920:G:T
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25236921G>T, NC_000015.9:g.25482068G>T, NG_002690.1:g.456012G>T

Select item 146832802319.

rs1468328023 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:25237534 (GRCh38)
15:25482681 (GRCh37)
Canonical SPDI:: NC_000015.10:25237533:C:A,NC_000015.10:25237533:C:T
Gene:: SNORD115-37 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25237534C>A, NC_000015.10:g.25237534C>T, NC_000015.9:g.25482681C>A, NC_000015.9:g.25482681C>T, NG_002690.1:g.456625C>A, NG_002690.1:g.456625C>T

Select item 146626366520.

rs1466263665 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25238448 (GRCh38)
15:25483595 (GRCh37)
Canonical SPDI:: NC_000015.10:25238447:G:A
Gene:: SNORD115-37 (Varview), SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25238448G>A, NC_000015.9:g.25483595G>A, NG_002690.1:g.457539G>A