SNP Links for Gene (Select 100033439) - SNP

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Items: 1 to 20 of 633

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Select item 14894435991.

rs1489443599 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:25101170 (GRCh38)
15:25346317 (GRCh37)
Canonical SPDI:: NC_000015.10:25101169:A:C
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25101170A>C, NC_000015.9:g.25346317A>C, NG_002690.1:g.320261A>C

Select item 14878081442.

rs1487808144 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25101595 (GRCh38)
15:25346742 (GRCh37)
Canonical SPDI:: NC_000015.10:25101594:A:G
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25101595A>G, NC_000015.9:g.25346742A>G, NG_002690.1:g.320686A>G, NR_003341.2:n.22A>G

Select item 14868787053.

rs1486878705 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25101221 (GRCh38)
15:25346368 (GRCh37)
Canonical SPDI:: NC_000015.10:25101220:A:G
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25101221A>G, NC_000015.9:g.25346368A>G, NG_002690.1:g.320312A>G

Select item 14852809574.

rs1485280957 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25100676 (GRCh38)
15:25345823 (GRCh37)
Canonical SPDI:: NC_000015.10:25100675:T:C
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000015.10:g.25100676T>C, NC_000015.9:g.25345823T>C, NG_002690.1:g.319767T>C

Select item 14851923355.

rs1485192335 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25101055 (GRCh38)
15:25346202 (GRCh37)
Canonical SPDI:: NC_000015.10:25101054:G:A
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25101055G>A, NC_000015.9:g.25346202G>A, NG_002690.1:g.320146G>A

Select item 14845971196.

rs1484597119 [Homo sapiens]

Variant type:: SNV:
Alleles:: TTG>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14841909617.

rs1484190961 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 15:25101812 (GRCh38)
15:25346959 (GRCh37)
Canonical SPDI:: NC_000015.10:25101811:TT:T
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25101813del, NC_000015.9:g.25346960del, NG_002690.1:g.320904del

Select item 14841361508.

rs1484136150 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:25100822 (GRCh38)
15:25345969 (GRCh37)
Canonical SPDI:: NC_000015.10:25100821:T:A,NC_000015.10:25100821:T:C
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.25100822T>A, NC_000015.10:g.25100822T>C, NC_000015.9:g.25345969T>A, NC_000015.9:g.25345969T>C, NG_002690.1:g.319913T>A, NG_002690.1:g.319913T>C

Select item 14820183529.

rs1482018352 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:25099864 (GRCh38)
15:25345011 (GRCh37)
Canonical SPDI:: NC_000015.10:25099863:T:G
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25099864T>G, NC_000015.9:g.25345011T>G, NG_002690.1:g.318955T>G

Select item 148090875910.

rs1480908759 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:25100962 (GRCh38)
15:25346109 (GRCh37)
Canonical SPDI:: NC_000015.10:25100961:T:A,NC_000015.10:25100961:T:C
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25100962T>A, NC_000015.10:g.25100962T>C, NC_000015.9:g.25346109T>A, NC_000015.9:g.25346109T>C, NG_002690.1:g.320053T>A, NG_002690.1:g.320053T>C

Select item 147961362711.

rs1479613627 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25099591 (GRCh38)
15:25344738 (GRCh37)
Canonical SPDI:: NC_000015.10:25099590:G:A
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25099591G>A, NC_000015.9:g.25344738G>A, NG_002690.1:g.318682G>A, NR_003340.2:n.94G>A

Select item 147641158912.

rs1476411589 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:25100322 (GRCh38)
15:25345469 (GRCh37)
Canonical SPDI:: NC_000015.10:25100321:A:C
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25100322A>C, NC_000015.9:g.25345469A>C, NG_002690.1:g.319413A>C

Select item 147639061213.

rs1476390612 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25101091 (GRCh38)
15:25346238 (GRCh37)
Canonical SPDI:: NC_000015.10:25101090:A:G
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000015.10:g.25101091A>G, NC_000015.9:g.25346238A>G, NG_002690.1:g.320182A>G

Select item 147564486014.

rs1475644860 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25101859 (GRCh38)
15:25347006 (GRCh37)
Canonical SPDI:: NC_000015.10:25101858:T:C
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25101859T>C, NC_000015.9:g.25347006T>C, NG_002690.1:g.320950T>C

Select item 147560433115.

rs1475604331 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25100466 (GRCh38)
15:25345613 (GRCh37)
Canonical SPDI:: NC_000015.10:25100465:A:G
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25100466A>G, NC_000015.9:g.25345613A>G, NG_002690.1:g.319557A>G

Select item 147495916816.

rs1474959168 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25102046 (GRCh38)
15:25347193 (GRCh37)
Canonical SPDI:: NC_000015.10:25102045:C:T
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0009/4 (ALFA)
HGVS:: NC_000015.10:g.25102046C>T, NC_000015.9:g.25347193C>T, NG_002690.1:g.321137C>T

Select item 147444068817.

rs1474440688 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25101188 (GRCh38)
15:25346335 (GRCh37)
Canonical SPDI:: NC_000015.10:25101187:A:G
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00016/1 (1000Genomes)
HGVS:: NC_000015.10:g.25101188A>G, NC_000015.9:g.25346335A>G, NG_002690.1:g.320279A>G

Select item 147410089218.

rs1474100892 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25100066 (GRCh38)
15:25345213 (GRCh37)
Canonical SPDI:: NC_000015.10:25100065:T:C
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000285/4 (ALFA)
C=0.000029/4 (GnomAD)
C=0.000034/9 (TOPMED)
HGVS:: NC_000015.10:g.25100066T>C, NC_000015.9:g.25345213T>C, NG_002690.1:g.319157T>C

Select item 147406482719.

rs1474064827 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25101805 (GRCh38)
15:25346952 (GRCh37)
Canonical SPDI:: NC_000015.10:25101804:A:G
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
G=0.000071/1 (TOMMO)
HGVS:: NC_000015.10:g.25101805A>G, NC_000015.9:g.25346952A>G, NG_002690.1:g.320896A>G

Select item 147396884320.

rs1473968843 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:25100909 (GRCh38)
15:25346056 (GRCh37)
Canonical SPDI:: NC_000015.10:25100908:T:G
Gene:: SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000468/3 (1000Genomes)
HGVS:: NC_000015.10:g.25100909T>G, NC_000015.9:g.25346056T>G, NG_002690.1:g.320000T>G

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