Name: rs77333990
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs77333990

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr2:192754591-192754603 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₁₁ / delTTT / delTT / delT /…
del(T)₁₁ / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₄ / dup(T)₅ / dup(T)₁₁ / dup(T)₁₂ / dup(T)₁₃
Variation Type: Indel Insertion and Deletion
Frequency: dupTT=0.2321 (1722/7420, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PCGEM1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	7420	TTTTTTTTTTTTT=0.7500	TT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.2321, TTTTTTTTTTTTTTTT=0.0166, TTTTTTTTTTTTTTTTTTTTTTTT=0.0008, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0005, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTT=0.0000	0.64849	0.118289	0.233221	32
European	Sub	6502	TTTTTTTTTTTTT=0.7152	TT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.2644, TTTTTTTTTTTTTTTT=0.0189, TTTTTTTTTTTTTTTTTTTTTTTT=0.0009, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0006, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTT=0.0000	0.597369	0.135387	0.267244	32
African	Sub	502	TTTTTTTTTTTTT=1.000	TT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
African Others	Sub	16	TTTTTTTTTTTTT=1.00	TT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	486	TTTTTTTTTTTTT=1.000	TT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Asian	Sub	16	TTTTTTTTTTTTT=1.00	TT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	16	TTTTTTTTTTTTT=1.00	TT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	0	TTTTTTTTTTTTT=0	TT=0, TTTTTTTTTT=0, TTTTTTTTTTT=0, TTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTT=0	0	0	0	N/A
Latin American 1	Sub	38	TTTTTTTTTTTTT=1.00	TT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	210	TTTTTTTTTTTTT=1.000	TT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	18	TTTTTTTTTTTTT=1.00	TT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	134	TTTTTTTTTTTTT=0.978	TT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.022, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000	0.970149	0.014925	0.014925	16

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	7420	(T)₁₃=0.7500	del(T)₁₁=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.2321, dupTTT=0.0166, dup(T)₄=0.0000, dup(T)₅=0.0000, dup(T)₁₁=0.0008, dup(T)₁₂=0.0005
Allele Frequency Aggregator	European	Sub	6502	(T)₁₃=0.7152	del(T)₁₁=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.2644, dupTTT=0.0189, dup(T)₄=0.0000, dup(T)₅=0.0000, dup(T)₁₁=0.0009, dup(T)₁₂=0.0006
Allele Frequency Aggregator	African	Sub	502	(T)₁₃=1.000	del(T)₁₁=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000, dup(T)₅=0.000, dup(T)₁₁=0.000, dup(T)₁₂=0.000
Allele Frequency Aggregator	Latin American 2	Sub	210	(T)₁₃=1.000	del(T)₁₁=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000, dup(T)₅=0.000, dup(T)₁₁=0.000, dup(T)₁₂=0.000
Allele Frequency Aggregator	Other	Sub	134	(T)₁₃=0.978	del(T)₁₁=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.022, dupTTT=0.000, dup(T)₄=0.000, dup(T)₅=0.000, dup(T)₁₁=0.000, dup(T)₁₂=0.000
Allele Frequency Aggregator	Latin American 1	Sub	38	(T)₁₃=1.00	del(T)₁₁=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₄=0.00, dup(T)₅=0.00, dup(T)₁₁=0.00, dup(T)₁₂=0.00
Allele Frequency Aggregator	South Asian	Sub	18	(T)₁₃=1.00	del(T)₁₁=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₄=0.00, dup(T)₅=0.00, dup(T)₁₁=0.00, dup(T)₁₂=0.00
Allele Frequency Aggregator	Asian	Sub	16	(T)₁₃=1.00	del(T)₁₁=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₄=0.00, dup(T)₅=0.00, dup(T)₁₁=0.00, dup(T)₁₂=0.00

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 2	NC_000002.12:g.192754593_192754603del
GRCh38.p14 chr 2	NC_000002.12:g.192754601_192754603del
GRCh38.p14 chr 2	NC_000002.12:g.192754602_192754603del
GRCh38.p14 chr 2	NC_000002.12:g.192754603del
GRCh38.p14 chr 2	NC_000002.12:g.192754603dup
GRCh38.p14 chr 2	NC_000002.12:g.192754602_192754603dup
GRCh38.p14 chr 2	NC_000002.12:g.192754601_192754603dup
GRCh38.p14 chr 2	NC_000002.12:g.192754600_192754603dup
GRCh38.p14 chr 2	NC_000002.12:g.192754599_192754603dup
GRCh38.p14 chr 2	NC_000002.12:g.192754593_192754603dup
GRCh38.p14 chr 2	NC_000002.12:g.192754592_192754603dup
GRCh38.p14 chr 2	NC_000002.12:g.192754591_192754603dup
GRCh37.p13 chr 2	NC_000002.11:g.193619319_193619329del
GRCh37.p13 chr 2	NC_000002.11:g.193619327_193619329del
GRCh37.p13 chr 2	NC_000002.11:g.193619328_193619329del
GRCh37.p13 chr 2	NC_000002.11:g.193619329del
GRCh37.p13 chr 2	NC_000002.11:g.193619329dup
GRCh37.p13 chr 2	NC_000002.11:g.193619328_193619329dup
GRCh37.p13 chr 2	NC_000002.11:g.193619327_193619329dup
GRCh37.p13 chr 2	NC_000002.11:g.193619326_193619329dup
GRCh37.p13 chr 2	NC_000002.11:g.193619325_193619329dup
GRCh37.p13 chr 2	NC_000002.11:g.193619319_193619329dup
GRCh37.p13 chr 2	NC_000002.11:g.193619318_193619329dup
GRCh37.p13 chr 2	NC_000002.11:g.193619317_193619329dup

Gene: PCGEM1, PCGEM1 prostate-specific transcript (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PCGEM1 transcript variant 1	NR_002769.1:n.	N/A	Intron Variant
PCGEM1 transcript variant 2	NR_152587.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₃=	del(T)₁₁	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₄	dup(T)₅	dup(T)₁₁	dup(T)₁₂	dup(T)₁₃
GRCh38.p14 chr 2	NC_000002.12:g.192754591_192754603=	NC_000002.12:g.192754593_192754603del	NC_000002.12:g.192754601_192754603del	NC_000002.12:g.192754602_192754603del	NC_000002.12:g.192754603del	NC_000002.12:g.192754603dup	NC_000002.12:g.192754602_192754603dup	NC_000002.12:g.192754601_192754603dup	NC_000002.12:g.192754600_192754603dup	NC_000002.12:g.192754599_192754603dup	NC_000002.12:g.192754593_192754603dup	NC_000002.12:g.192754592_192754603dup	NC_000002.12:g.192754591_192754603dup
GRCh37.p13 chr 2	NC_000002.11:g.193619317_193619329=	NC_000002.11:g.193619319_193619329del	NC_000002.11:g.193619327_193619329del	NC_000002.11:g.193619328_193619329del	NC_000002.11:g.193619329del	NC_000002.11:g.193619329dup	NC_000002.11:g.193619328_193619329dup	NC_000002.11:g.193619327_193619329dup	NC_000002.11:g.193619326_193619329dup	NC_000002.11:g.193619325_193619329dup	NC_000002.11:g.193619319_193619329dup	NC_000002.11:g.193619318_193619329dup	NC_000002.11:g.193619317_193619329dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

59 SubSNP, 33 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss79819328	Dec 04, 2013 (138)
2	BCMHGSC_JDW	ss103640718	Dec 01, 2009 (131)
3	GMI	ss288271307	Oct 11, 2018 (152)
4	SSMP	ss663270727	Apr 01, 2015 (144)
5	DDI	ss1536323488	Apr 01, 2015 (144)
6	EVA_UK10K_ALSPAC	ss1703340403	Apr 01, 2015 (144)
7	EVA_UK10K_TWINSUK	ss1703340404	Apr 01, 2015 (144)
8	EVA_UK10K_ALSPAC	ss1703340405	Apr 01, 2015 (144)
9	EVA_UK10K_TWINSUK	ss1703340406	Apr 01, 2015 (144)
10	SYSTEMSBIOZJU	ss2625034723	Nov 08, 2017 (151)
11	SWEGEN	ss2991098009	Nov 08, 2017 (151)
12	SWEGEN	ss2991098011	Nov 08, 2017 (151)
13	SWEGEN	ss2991098012	Nov 08, 2017 (151)
14	MCHAISSO	ss3063972607	Nov 08, 2017 (151)
15	MCHAISSO	ss3064826910	Nov 08, 2017 (151)
16	MCHAISSO	ss3065785626	Nov 08, 2017 (151)
17	ACPOP	ss3729234239	Jul 13, 2019 (153)
18	ACPOP	ss3729234240	Jul 13, 2019 (153)
19	PACBIO	ss3784107536	Jul 13, 2019 (153)
20	PACBIO	ss3789652996	Jul 13, 2019 (153)
21	PACBIO	ss3794526135	Jul 13, 2019 (153)
22	EVA	ss3837132723	Apr 25, 2020 (154)
23	EVA	ss3842553559	Apr 25, 2020 (154)
24	KOGIC	ss3949770623	Apr 25, 2020 (154)
25	KOGIC	ss3949770624	Apr 25, 2020 (154)
26	KOGIC	ss3949770625	Apr 25, 2020 (154)
27	KOGIC	ss3949770626	Apr 25, 2020 (154)
28	GNOMAD	ss4058173309	Apr 26, 2021 (155)
29	GNOMAD	ss4058173310	Apr 26, 2021 (155)
30	GNOMAD	ss4058173311	Apr 26, 2021 (155)
31	GNOMAD	ss4058173312	Apr 26, 2021 (155)
32	GNOMAD	ss4058173313	Apr 26, 2021 (155)
33	GNOMAD	ss4058173314	Apr 26, 2021 (155)
34	GNOMAD	ss4058173315	Apr 26, 2021 (155)
35	GNOMAD	ss4058173316	Apr 26, 2021 (155)
36	GNOMAD	ss4058173318	Apr 26, 2021 (155)
37	GNOMAD	ss4058173319	Apr 26, 2021 (155)
38	GNOMAD	ss4058173320	Apr 26, 2021 (155)
39	TOMMO_GENOMICS	ss5155763021	Apr 26, 2021 (155)
40	TOMMO_GENOMICS	ss5155763022	Apr 26, 2021 (155)
41	TOMMO_GENOMICS	ss5155763023	Apr 26, 2021 (155)
42	TOMMO_GENOMICS	ss5155763024	Apr 26, 2021 (155)
43	TOMMO_GENOMICS	ss5155763025	Apr 26, 2021 (155)
44	1000G_HIGH_COVERAGE	ss5251467444	Oct 12, 2022 (156)
45	1000G_HIGH_COVERAGE	ss5251467445	Oct 12, 2022 (156)
46	1000G_HIGH_COVERAGE	ss5251467446	Oct 12, 2022 (156)
47	1000G_HIGH_COVERAGE	ss5251467448	Oct 12, 2022 (156)
48	1000G_HIGH_COVERAGE	ss5251467449	Oct 12, 2022 (156)
49	HUGCELL_USP	ss5451139424	Oct 12, 2022 (156)
50	HUGCELL_USP	ss5451139425	Oct 12, 2022 (156)
51	HUGCELL_USP	ss5451139427	Oct 12, 2022 (156)
52	HUGCELL_USP	ss5451139428	Oct 12, 2022 (156)
53	TOMMO_GENOMICS	ss5686429952	Oct 12, 2022 (156)
54	TOMMO_GENOMICS	ss5686429953	Oct 12, 2022 (156)
55	TOMMO_GENOMICS	ss5686429954	Oct 12, 2022 (156)
56	TOMMO_GENOMICS	ss5686429956	Oct 12, 2022 (156)
57	TOMMO_GENOMICS	ss5686429957	Oct 12, 2022 (156)
58	EVA	ss5821373536	Oct 12, 2022 (156)
59	EVA	ss5821373537	Oct 12, 2022 (156)
60	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 6676008 (NC_000002.11:193619316::TT 1617/3854) Row 6676009 (NC_000002.11:193619316::TTT 145/3854)	-	Oct 11, 2018 (152)
61	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 6676008 (NC_000002.11:193619316::TT 1617/3854) Row 6676009 (NC_000002.11:193619316::TTT 145/3854)	-	Oct 11, 2018 (152)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
65	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
66	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
67	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
68	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
69	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
70	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
71	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
72	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
73	gnomAD - Genomes Submission ignored due to conflicting rows: Row 86103510 (NC_000002.12:192754590::T 520/131790) Row 86103511 (NC_000002.12:192754590::TT 60709/131682) Row 86103512 (NC_000002.12:192754590::TTT 4226/131872)...	-	Apr 26, 2021 (155)
74	Korean Genome Project Submission ignored due to conflicting rows: Row 6148624 (NC_000002.12:192754591::T 44/1828) Row 6148625 (NC_000002.12:192754591::TT 834/1828) Row 6148626 (NC_000002.12:192754590:T: 18/1828)...	-	Apr 25, 2020 (154)
75	Korean Genome Project Submission ignored due to conflicting rows: Row 6148624 (NC_000002.12:192754591::T 44/1828) Row 6148625 (NC_000002.12:192754591::TT 834/1828) Row 6148626 (NC_000002.12:192754590:T: 18/1828)...	-	Apr 25, 2020 (154)
76	Korean Genome Project Submission ignored due to conflicting rows: Row 6148624 (NC_000002.12:192754591::T 44/1828) Row 6148625 (NC_000002.12:192754591::TT 834/1828) Row 6148626 (NC_000002.12:192754590:T: 18/1828)...	-	Apr 25, 2020 (154)
77	Korean Genome Project Submission ignored due to conflicting rows: Row 6148624 (NC_000002.12:192754591::T 44/1828) Row 6148625 (NC_000002.12:192754591::TT 834/1828) Row 6148626 (NC_000002.12:192754590:T: 18/1828)...	-	Apr 25, 2020 (154)
78	Northern Sweden Submission ignored due to conflicting rows: Row 2519104 (NC_000002.11:193619316::TT 229/596) Row 2519105 (NC_000002.11:193619316::TTT 15/596)	-	Jul 13, 2019 (153)
79	Northern Sweden Submission ignored due to conflicting rows: Row 2519104 (NC_000002.11:193619316::TT 229/596) Row 2519105 (NC_000002.11:193619316::TTT 15/596)	-	Jul 13, 2019 (153)
80	8.3KJPN Submission ignored due to conflicting rows: Row 13732328 (NC_000002.11:193619316::TT 9613/16746) Row 13732329 (NC_000002.11:193619316:T: 4/16746) Row 13732330 (NC_000002.11:193619316::TTT 246/16746)...	-	Apr 26, 2021 (155)
81	8.3KJPN Submission ignored due to conflicting rows: Row 13732328 (NC_000002.11:193619316::TT 9613/16746) Row 13732329 (NC_000002.11:193619316:T: 4/16746) Row 13732330 (NC_000002.11:193619316::TTT 246/16746)...	-	Apr 26, 2021 (155)
82	8.3KJPN Submission ignored due to conflicting rows: Row 13732328 (NC_000002.11:193619316::TT 9613/16746) Row 13732329 (NC_000002.11:193619316:T: 4/16746) Row 13732330 (NC_000002.11:193619316::TTT 246/16746)...	-	Apr 26, 2021 (155)
83	8.3KJPN Submission ignored due to conflicting rows: Row 13732328 (NC_000002.11:193619316::TT 9613/16746) Row 13732329 (NC_000002.11:193619316:T: 4/16746) Row 13732330 (NC_000002.11:193619316::TTT 246/16746)...	-	Apr 26, 2021 (155)
84	8.3KJPN Submission ignored due to conflicting rows: Row 13732328 (NC_000002.11:193619316::TT 9613/16746) Row 13732329 (NC_000002.11:193619316:T: 4/16746) Row 13732330 (NC_000002.11:193619316::TTT 246/16746)...	-	Apr 26, 2021 (155)
85	14KJPN Submission ignored due to conflicting rows: Row 20267056 (NC_000002.12:192754590::TT 16104/28240) Row 20267057 (NC_000002.12:192754590::TTT 383/28240) Row 20267058 (NC_000002.12:192754590::T 30/28240)...	-	Oct 12, 2022 (156)
86	14KJPN Submission ignored due to conflicting rows: Row 20267056 (NC_000002.12:192754590::TT 16104/28240) Row 20267057 (NC_000002.12:192754590::TTT 383/28240) Row 20267058 (NC_000002.12:192754590::T 30/28240)...	-	Oct 12, 2022 (156)
87	14KJPN Submission ignored due to conflicting rows: Row 20267056 (NC_000002.12:192754590::TT 16104/28240) Row 20267057 (NC_000002.12:192754590::TTT 383/28240) Row 20267058 (NC_000002.12:192754590::T 30/28240)...	-	Oct 12, 2022 (156)
88	14KJPN Submission ignored due to conflicting rows: Row 20267056 (NC_000002.12:192754590::TT 16104/28240) Row 20267057 (NC_000002.12:192754590::TTT 383/28240) Row 20267058 (NC_000002.12:192754590::T 30/28240)...	-	Oct 12, 2022 (156)
89	14KJPN Submission ignored due to conflicting rows: Row 20267056 (NC_000002.12:192754590::TT 16104/28240) Row 20267057 (NC_000002.12:192754590::TTT 383/28240) Row 20267058 (NC_000002.12:192754590::T 30/28240)...	-	Oct 12, 2022 (156)
90	UK 10K study - Twins Submission ignored due to conflicting rows: Row 6676008 (NC_000002.11:193619316::TT 1595/3708) Row 6676009 (NC_000002.11:193619316::TTT 132/3708)	-	Oct 11, 2018 (152)
91	UK 10K study - Twins Submission ignored due to conflicting rows: Row 6676008 (NC_000002.11:193619316::TT 1595/3708) Row 6676009 (NC_000002.11:193619316::TTT 132/3708)	-	Oct 11, 2018 (152)
92	ALFA	NC_000002.12 - 192754591	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4058173320	NC_000002.12:192754590:TTTTTTTTTTT:	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TT	(self)
ss4058173319	NC_000002.12:192754590:TTT:	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTT	(self)
ss4058173318, ss5251467445, ss5451139428	NC_000002.12:192754590:TT:	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss103640718	NT_005403.17:43828745:TT:	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss5155763022	NC_000002.11:193619316:T:	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3949770625, ss5686429956	NC_000002.12:192754590:T:	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss2991098012, ss5155763024	NC_000002.11:193619316::T	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4058173309, ss5251467448, ss5451139427, ss5686429954	NC_000002.12:192754590::T	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3949770623	NC_000002.12:192754591::T	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss288271307	NC_000002.10:193327574::TT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss663270727, ss1536323488, ss1703340403, ss1703340404, ss2625034723, ss2991098009, ss3729234239, ss3784107536, ss3789652996, ss3794526135, ss3837132723, ss5155763021, ss5821373536	NC_000002.11:193619316::TT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3063972607, ss3064826910, ss3065785626, ss3842553559, ss4058173310, ss5251467444, ss5451139424, ss5686429952	NC_000002.12:192754590::TT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3949770624	NC_000002.12:192754591::TT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss79819328	NT_005403.17:43828747::TT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss1703340405, ss1703340406, ss2991098011, ss3729234240, ss5155763023, ss5821373537	NC_000002.11:193619316::TTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss4058173311, ss5251467446, ss5451139425, ss5686429953	NC_000002.12:192754590::TTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3949770626	NC_000002.12:192754591::TTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss5155763025	NC_000002.11:193619316::TTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss4058173312, ss5251467449, ss5686429957	NC_000002.12:192754590::TTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss4058173313	NC_000002.12:192754590::TTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss4058173314	NC_000002.12:192754590::TTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT	(self)
ss4058173315	NC_000002.12:192754590::TTTTTTTTTT… NC_000002.12:192754590::TTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT	(self)
7840923744	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT	(self)
ss4058173316	NC_000002.12:192754590::TTTTTTTTTT… NC_000002.12:192754590::TTTTTTTTTTTTT	NC_000002.12:192754590:TTTTTTTTTTT… NC_000002.12:192754590:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs77333990

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs77333990