Name: rs71178700
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs71178700

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr19:16492862-16492880 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(A)₆ / del(A)₄ / delAAA / delAA…
del(A)₆ / del(A)₄ / delAAA / delAA / delA / dupA / dupAA / dupAAA / dup(A)₅ / dup(A)₆
Variation Type: Indel Insertion and Deletion
Frequency: dupA=0.4157 (2082/5008, 1000G)
del(A)₆=0.000 (0/538, ALFA)
delAAA=0.000 (0/538, ALFA) (+ 5 more)
delAA=0.000 (0/538, ALFA)
delA=0.000 (0/538, ALFA)
dupA=0.000 (0/538, ALFA)
dupAA=0.000 (0/538, ALFA)
dupAAA=0.000 (0/538, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: CALR3 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	HWEP
Total	Global	538	AAAAAAAAAAAAAAAAAAA=1.000	AAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAA=0.000	1.0	N/A
European	Sub	226	AAAAAAAAAAAAAAAAAAA=1.000	AAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAA=0.000	1.0	N/A
African	Sub	196	AAAAAAAAAAAAAAAAAAA=1.000	AAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAA=0.000	1.0	N/A
African Others	Sub	14	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
African American	Sub	182	AAAAAAAAAAAAAAAAAAA=1.000	AAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAA=0.000	1.0	N/A
Asian	Sub	16	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
East Asian	Sub	6	AAAAAAAAAAAAAAAAAAA=1.0	AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAAAA=0.0	1.0	N/A
Other Asian	Sub	10	AAAAAAAAAAAAAAAAAAA=1.0	AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAAAA=0.0	1.0	N/A
Latin American 1	Sub	4	AAAAAAAAAAAAAAAAAAA=1.0	AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAAAA=0.0	1.0	N/A
Latin American 2	Sub	72	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
South Asian	Sub	2	AAAAAAAAAAAAAAAAAAA=1.0	AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAAAAA=0.0	1.0	N/A
Other	Sub	22	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
1000Genomes	Global	Study-wide	5008	- No frequency provided	dupA=0.4157
1000Genomes	African	Sub	1322	- No frequency provided	dupA=0.2859
1000Genomes	East Asian	Sub	1008	- No frequency provided	dupA=0.3879
1000Genomes	Europe	Sub	1006	- No frequency provided	dupA=0.4960
1000Genomes	South Asian	Sub	978	- No frequency provided	dupA=0.517
1000Genomes	American	Sub	694	- No frequency provided	dupA=0.444
Allele Frequency Aggregator	Total	Global	538	(A)₁₉=1.000	del(A)₆=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000, dupAA=0.000, dupAAA=0.000
Allele Frequency Aggregator	European	Sub	226	(A)₁₉=1.000	del(A)₆=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000, dupAA=0.000, dupAAA=0.000
Allele Frequency Aggregator	African	Sub	196	(A)₁₉=1.000	del(A)₆=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000, dupAA=0.000, dupAAA=0.000
Allele Frequency Aggregator	Latin American 2	Sub	72	(A)₁₉=1.00	del(A)₆=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dupAAA=0.00
Allele Frequency Aggregator	Other	Sub	22	(A)₁₉=1.00	del(A)₆=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dupAAA=0.00
Allele Frequency Aggregator	Asian	Sub	16	(A)₁₉=1.00	del(A)₆=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dupAAA=0.00
Allele Frequency Aggregator	Latin American 1	Sub	4	(A)₁₉=1.0	del(A)₆=0.0, delAAA=0.0, delAA=0.0, delA=0.0, dupA=0.0, dupAA=0.0, dupAAA=0.0
Allele Frequency Aggregator	South Asian	Sub	2	(A)₁₉=1.0	del(A)₆=0.0, delAAA=0.0, delAA=0.0, delA=0.0, dupA=0.0, dupAA=0.0, dupAAA=0.0

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 19	NC_000019.10:g.16492875_16492880del
GRCh38.p14 chr 19	NC_000019.10:g.16492877_16492880del
GRCh38.p14 chr 19	NC_000019.10:g.16492878_16492880del
GRCh38.p14 chr 19	NC_000019.10:g.16492879_16492880del
GRCh38.p14 chr 19	NC_000019.10:g.16492880del
GRCh38.p14 chr 19	NC_000019.10:g.16492880dup
GRCh38.p14 chr 19	NC_000019.10:g.16492879_16492880dup
GRCh38.p14 chr 19	NC_000019.10:g.16492878_16492880dup
GRCh38.p14 chr 19	NC_000019.10:g.16492876_16492880dup
GRCh38.p14 chr 19	NC_000019.10:g.16492875_16492880dup
GRCh37.p13 chr 19	NC_000019.9:g.16603686_16603691del
GRCh37.p13 chr 19	NC_000019.9:g.16603688_16603691del
GRCh37.p13 chr 19	NC_000019.9:g.16603689_16603691del
GRCh37.p13 chr 19	NC_000019.9:g.16603690_16603691del
GRCh37.p13 chr 19	NC_000019.9:g.16603691del
GRCh37.p13 chr 19	NC_000019.9:g.16603691dup
GRCh37.p13 chr 19	NC_000019.9:g.16603690_16603691dup
GRCh37.p13 chr 19	NC_000019.9:g.16603689_16603691dup
GRCh37.p13 chr 19	NC_000019.9:g.16603687_16603691dup
GRCh37.p13 chr 19	NC_000019.9:g.16603686_16603691dup
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140338_140343del
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140340_140343del
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140341_140343del
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140342_140343del
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140343del
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140343dup
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140342_140343dup
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140341_140343dup
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140339_140343dup
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140338_140343dup

Gene: CALR3, calreticulin 3 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
CALR3 transcript	NM_145046.5:c.194-2297_19… NM_145046.5:c.194-2297_194-2292del	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₉=	del(A)₆	del(A)₄	delAAA	delAA	delA	dupA	dupAA	dupAAA	dup(A)₅	dup(A)₆
GRCh38.p14 chr 19	NC_000019.10:g.16492862_16492880=	NC_000019.10:g.16492875_16492880del	NC_000019.10:g.16492877_16492880del	NC_000019.10:g.16492878_16492880del	NC_000019.10:g.16492879_16492880del	NC_000019.10:g.16492880del	NC_000019.10:g.16492880dup	NC_000019.10:g.16492879_16492880dup	NC_000019.10:g.16492878_16492880dup	NC_000019.10:g.16492876_16492880dup	NC_000019.10:g.16492875_16492880dup
GRCh37.p13 chr 19	NC_000019.9:g.16603673_16603691=	NC_000019.9:g.16603686_16603691del	NC_000019.9:g.16603688_16603691del	NC_000019.9:g.16603689_16603691del	NC_000019.9:g.16603690_16603691del	NC_000019.9:g.16603691del	NC_000019.9:g.16603691dup	NC_000019.9:g.16603690_16603691dup	NC_000019.9:g.16603689_16603691dup	NC_000019.9:g.16603687_16603691dup	NC_000019.9:g.16603686_16603691dup
CALR3 RefSeqGene (LRG_422)	NG_031959.2:g.140325_140343=	NG_031959.2:g.140338_140343del	NG_031959.2:g.140340_140343del	NG_031959.2:g.140341_140343del	NG_031959.2:g.140342_140343del	NG_031959.2:g.140343del	NG_031959.2:g.140343dup	NG_031959.2:g.140342_140343dup	NG_031959.2:g.140341_140343dup	NG_031959.2:g.140339_140343dup	NG_031959.2:g.140338_140343dup
CALR3 transcript	NM_145046.4:c.194-2292=	NM_145046.4:c.194-2297_194-2292del	NM_145046.4:c.194-2295_194-2292del	NM_145046.4:c.194-2294_194-2292del	NM_145046.4:c.194-2293_194-2292del	NM_145046.4:c.194-2292del	NM_145046.4:c.194-2292dup	NM_145046.4:c.194-2293_194-2292dup	NM_145046.4:c.194-2294_194-2292dup	NM_145046.4:c.194-2296_194-2292dup	NM_145046.4:c.194-2297_194-2292dup
CALR3 transcript	NM_145046.5:c.194-2292=	NM_145046.5:c.194-2297_194-2292del	NM_145046.5:c.194-2295_194-2292del	NM_145046.5:c.194-2294_194-2292del	NM_145046.5:c.194-2293_194-2292del	NM_145046.5:c.194-2292del	NM_145046.5:c.194-2292dup	NM_145046.5:c.194-2293_194-2292dup	NM_145046.5:c.194-2294_194-2292dup	NM_145046.5:c.194-2296_194-2292dup	NM_145046.5:c.194-2297_194-2292dup
CALR3 transcript variant X1	XM_005259729.1:c.193+2889=	XM_005259729.1:c.193+2884_193+2889del	XM_005259729.1:c.193+2886_193+2889del	XM_005259729.1:c.193+2887_193+2889del	XM_005259729.1:c.193+2888_193+2889del	XM_005259729.1:c.193+2889del	XM_005259729.1:c.193+2889dup	XM_005259729.1:c.193+2888_193+2889dup	XM_005259729.1:c.193+2887_193+2889dup	XM_005259729.1:c.193+2885_193+2889dup	XM_005259729.1:c.193+2884_193+2889dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

52 SubSNP, 25 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HUMANGENOME_JCVI	ss95723297	Dec 05, 2013 (138)
2	PJP	ss294955720	May 09, 2011 (135)
3	SSMP	ss664428442	Apr 01, 2015 (144)
4	1000GENOMES	ss1378011365	Aug 21, 2014 (142)
5	EVA_UK10K_ALSPAC	ss1709140389	Jan 10, 2018 (151)
6	EVA_UK10K_TWINSUK	ss1709140590	Jan 10, 2018 (151)
7	EVA_UK10K_TWINSUK	ss1710783251	Apr 01, 2015 (144)
8	EVA_UK10K_ALSPAC	ss1710783252	Apr 01, 2015 (144)
9	EVA_UK10K_TWINSUK	ss1710783253	Apr 01, 2015 (144)
10	EVA_UK10K_ALSPAC	ss1710783254	Apr 01, 2015 (144)
11	SWEGEN	ss3017181012	Jan 10, 2018 (151)
12	URBANLAB	ss3650877891	Oct 12, 2018 (152)
13	EVA_DECODE	ss3702443423	Jul 13, 2019 (153)
14	EVA_DECODE	ss3702443424	Jul 13, 2019 (153)
15	EVA_DECODE	ss3702443425	Jul 13, 2019 (153)
16	EVA_DECODE	ss3702443426	Jul 13, 2019 (153)
17	EVA_DECODE	ss3702443427	Jul 13, 2019 (153)
18	PACBIO	ss3793400040	Jul 13, 2019 (153)
19	PACBIO	ss3793400041	Jul 13, 2019 (153)
20	PACBIO	ss3798286765	Jul 13, 2019 (153)
21	PACBIO	ss3798286766	Jul 13, 2019 (153)
22	KHV_HUMAN_GENOMES	ss3821121341	Jul 13, 2019 (153)
23	EVA	ss3835377293	Apr 27, 2020 (154)
24	GNOMAD	ss4328466247	Apr 27, 2021 (155)
25	GNOMAD	ss4328466248	Apr 27, 2021 (155)
26	GNOMAD	ss4328466249	Apr 27, 2021 (155)
27	GNOMAD	ss4328466250	Apr 27, 2021 (155)
28	GNOMAD	ss4328466251	Apr 27, 2021 (155)
29	GNOMAD	ss4328466252	Apr 27, 2021 (155)
30	GNOMAD	ss4328466253	Apr 27, 2021 (155)
31	GNOMAD	ss4328466254	Apr 27, 2021 (155)
32	GNOMAD	ss4328466255	Apr 27, 2021 (155)
33	TOMMO_GENOMICS	ss5226980576	Apr 27, 2021 (155)
34	TOMMO_GENOMICS	ss5226980577	Apr 27, 2021 (155)
35	TOMMO_GENOMICS	ss5226980578	Apr 27, 2021 (155)
36	TOMMO_GENOMICS	ss5226980579	Apr 27, 2021 (155)
37	1000G_HIGH_COVERAGE	ss5306669403	Oct 13, 2022 (156)
38	1000G_HIGH_COVERAGE	ss5306669404	Oct 13, 2022 (156)
39	1000G_HIGH_COVERAGE	ss5306669406	Oct 13, 2022 (156)
40	1000G_HIGH_COVERAGE	ss5306669407	Oct 13, 2022 (156)
41	HUGCELL_USP	ss5499274397	Oct 13, 2022 (156)
42	HUGCELL_USP	ss5499274398	Oct 13, 2022 (156)
43	HUGCELL_USP	ss5499274399	Oct 13, 2022 (156)
44	HUGCELL_USP	ss5499274400	Oct 13, 2022 (156)
45	TOMMO_GENOMICS	ss5785343594	Oct 13, 2022 (156)
46	TOMMO_GENOMICS	ss5785343595	Oct 13, 2022 (156)
47	TOMMO_GENOMICS	ss5785343596	Oct 13, 2022 (156)
48	TOMMO_GENOMICS	ss5785343598	Oct 13, 2022 (156)
49	EVA	ss5840322575	Oct 13, 2022 (156)
50	EVA	ss5840322576	Oct 13, 2022 (156)
51	EVA	ss5840322577	Oct 13, 2022 (156)
52	EVA	ss5852223802	Oct 13, 2022 (156)
53	1000Genomes	NC_000019.9 - 16603673	Oct 12, 2018 (152)
54	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 42057774 (NC_000019.9:16603672::A 1278/3854) Row 42057775 (NC_000019.9:16603672::AA 1249/3854) Row 42057776 (NC_000019.9:16603672:AA: 893/3854)	-	Oct 12, 2018 (152)
55	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 42057774 (NC_000019.9:16603672::A 1278/3854) Row 42057775 (NC_000019.9:16603672::AA 1249/3854) Row 42057776 (NC_000019.9:16603672:AA: 893/3854)	-	Oct 12, 2018 (152)
56	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 42057774 (NC_000019.9:16603672::A 1278/3854) Row 42057775 (NC_000019.9:16603672::AA 1249/3854) Row 42057776 (NC_000019.9:16603672:AA: 893/3854)	-	Oct 12, 2018 (152)
57	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
58	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
59	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
65	gnomAD - Genomes Submission ignored due to conflicting rows: Row 535432105 (NC_000019.10:16492861::A 69684/114310) Row 535432106 (NC_000019.10:16492861::AA 1214/114332) Row 535432107 (NC_000019.10:16492861::AAA 8/114594)...	-	Apr 27, 2021 (155)
66	8.3KJPN Submission ignored due to conflicting rows: Row 84949883 (NC_000019.9:16603672::A 10966/16562) Row 84949884 (NC_000019.9:16603672:AA: 902/16562) Row 84949885 (NC_000019.9:16603672:AAA: 4/16562)...	-	Apr 27, 2021 (155)
67	8.3KJPN Submission ignored due to conflicting rows: Row 84949883 (NC_000019.9:16603672::A 10966/16562) Row 84949884 (NC_000019.9:16603672:AA: 902/16562) Row 84949885 (NC_000019.9:16603672:AAA: 4/16562)...	-	Apr 27, 2021 (155)
68	8.3KJPN Submission ignored due to conflicting rows: Row 84949883 (NC_000019.9:16603672::A 10966/16562) Row 84949884 (NC_000019.9:16603672:AA: 902/16562) Row 84949885 (NC_000019.9:16603672:AAA: 4/16562)...	-	Apr 27, 2021 (155)
69	8.3KJPN Submission ignored due to conflicting rows: Row 84949883 (NC_000019.9:16603672::A 10966/16562) Row 84949884 (NC_000019.9:16603672:AA: 902/16562) Row 84949885 (NC_000019.9:16603672:AAA: 4/16562)...	-	Apr 27, 2021 (155)
70	14KJPN Submission ignored due to conflicting rows: Row 119180698 (NC_000019.10:16492861::A 16196/27040) Row 119180699 (NC_000019.10:16492861:AA: 1539/27040) Row 119180700 (NC_000019.10:16492861:AAA: 7/27040)...	-	Oct 13, 2022 (156)
71	14KJPN Submission ignored due to conflicting rows: Row 119180698 (NC_000019.10:16492861::A 16196/27040) Row 119180699 (NC_000019.10:16492861:AA: 1539/27040) Row 119180700 (NC_000019.10:16492861:AAA: 7/27040)...	-	Oct 13, 2022 (156)
72	14KJPN Submission ignored due to conflicting rows: Row 119180698 (NC_000019.10:16492861::A 16196/27040) Row 119180699 (NC_000019.10:16492861:AA: 1539/27040) Row 119180700 (NC_000019.10:16492861:AAA: 7/27040)...	-	Oct 13, 2022 (156)
73	14KJPN Submission ignored due to conflicting rows: Row 119180698 (NC_000019.10:16492861::A 16196/27040) Row 119180699 (NC_000019.10:16492861:AA: 1539/27040) Row 119180700 (NC_000019.10:16492861:AAA: 7/27040)...	-	Oct 13, 2022 (156)
74	UK 10K study - Twins Submission ignored due to conflicting rows: Row 42057774 (NC_000019.9:16603672::A 1321/3708) Row 42057775 (NC_000019.9:16603672::AA 1133/3708) Row 42057776 (NC_000019.9:16603672:AA: 803/3708)	-	Oct 12, 2018 (152)
75	UK 10K study - Twins Submission ignored due to conflicting rows: Row 42057774 (NC_000019.9:16603672::A 1321/3708) Row 42057775 (NC_000019.9:16603672::AA 1133/3708) Row 42057776 (NC_000019.9:16603672:AA: 803/3708)	-	Oct 12, 2018 (152)
76	UK 10K study - Twins Submission ignored due to conflicting rows: Row 42057774 (NC_000019.9:16603672::A 1321/3708) Row 42057775 (NC_000019.9:16603672::AA 1133/3708) Row 42057776 (NC_000019.9:16603672:AA: 803/3708)	-	Oct 12, 2018 (152)
77	ALFA	NC_000019.10 - 16492862	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs143069625	Sep 17, 2011 (135)
rs796502580	Nov 08, 2017 (151)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
7051234014	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss4328466255	NC_000019.10:16492861:AAAA:	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss5226980578	NC_000019.9:16603672:AAA:	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss3702443427, ss4328466254, ss5785343596	NC_000019.10:16492861:AAA:	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
7051234014	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss1709140389, ss1709140590, ss3017181012, ss3793400040, ss3798286765, ss5226980577, ss5840322577	NC_000019.9:16603672:AA:	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
ss4328466253, ss5306669404, ss5499274398, ss5785343595, ss5852223802	NC_000019.10:16492861:AA:	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
7051234014	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
ss3702443426	NC_000019.10:16492862:AA:	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
ss4328466252, ss5306669406, ss5499274399	NC_000019.10:16492861:A:	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
7051234014	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss3702443425	NC_000019.10:16492863:A:	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss294955720	NC_000019.8:16464691::A	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
75918170, ss1378011365, ss3793400041, ss3798286766, ss3835377293, ss5226980576, ss5840322575	NC_000019.9:16603672::A	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
ss1710783251, ss1710783252	NC_000019.9:16603674::A	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
ss3821121341, ss4328466247, ss5306669403, ss5499274397, ss5785343594	NC_000019.10:16492861::A	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
7051234014	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
ss3702443424	NC_000019.10:16492864::A	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
ss95723297	NT_011295.11:7866493::A	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
ss664428442, ss5226980579, ss5840322576	NC_000019.9:16603672::AA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)
ss1710783253, ss1710783254	NC_000019.9:16603674::AA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)
ss3650877891, ss4328466248, ss5306669407, ss5499274400, ss5785343598	NC_000019.10:16492861::AA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)
7051234014	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)
ss3702443423	NC_000019.10:16492864::AA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)
ss4328466249	NC_000019.10:16492861::AAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA	(self)
7051234014	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA	(self)
ss4328466250	NC_000019.10:16492861::AAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA	(self)
ss4328466251	NC_000019.10:16492861::AAAAAA	NC_000019.10:16492861:AAAAAAAAAAAA… NC_000019.10:16492861:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs71178700

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs71178700