Name: rs59524140
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs59524140

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr3:39480041-39480053 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(A)₇ / del(A)₄ / delAAA / delAA…
del(A)₇ / del(A)₄ / delAAA / delAA / delA / dupA / dupAA / dup(A)₈
Variation Type: Indel Insertion and Deletion
Frequency: delAA=0.07186 (734/10214, ALFA)
delAA=0.3408 (1489/4369, 1000G)
delAA=0.1938 (747/3854, ALSPAC) (+ 2 more)
delAA=0.1950 (723/3708, TWINSUK)
delAA=0.30 (12/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: MOBP : Non Coding Transcript Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	10214	AAAAAAAAAAAAA=0.90934	AAAAAA=0.00000, AAAAAAAAAA=0.00000, AAAAAAAAAAA=0.07186, AAAAAAAAAAAA=0.01880, AAAAAAAAAAAAAA=0.00000	0.872029	0.014219	0.113752	32
European	Sub	9202	AAAAAAAAAAAAA=0.8995	AAAAAA=0.0000, AAAAAAAAAA=0.0000, AAAAAAAAAAA=0.0797, AAAAAAAAAAAA=0.0209, AAAAAAAAAAAAAA=0.0000	0.857596	0.015848	0.126556	32
African	Sub	268	AAAAAAAAAAAAA=1.000	AAAAAA=0.000, AAAAAAAAAA=0.000, AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A
African Others	Sub	4	AAAAAAAAAAAAA=1.0	AAAAAA=0.0, AAAAAAAAAA=0.0, AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
African American	Sub	264	AAAAAAAAAAAAA=1.000	AAAAAA=0.000, AAAAAAAAAA=0.000, AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A
Asian	Sub	50	AAAAAAAAAAAAA=1.00	AAAAAA=0.00, AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	42	AAAAAAAAAAAAA=1.00	AAAAAA=0.00, AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	8	AAAAAAAAAAAAA=1.0	AAAAAA=0.0, AAAAAAAAAA=0.0, AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
Latin American 1	Sub	74	AAAAAAAAAAAAA=1.00	AAAAAA=0.00, AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	400	AAAAAAAAAAAAA=1.000	AAAAAA=0.000, AAAAAAAAAA=0.000, AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	36	AAAAAAAAAAAAA=1.00	AAAAAA=0.00, AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Other	Sub	184	AAAAAAAAAAAAA=0.995	AAAAAA=0.000, AAAAAAAAAA=0.000, AAAAAAAAAAA=0.005, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAA=0.000	0.98913	0.0	0.01087	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	10214	(A)₁₃=0.90934	del(A)₇=0.00000, delAAA=0.00000, delAA=0.07186, delA=0.01880, dupA=0.00000
Allele Frequency Aggregator	European	Sub	9202	(A)₁₃=0.8995	del(A)₇=0.0000, delAAA=0.0000, delAA=0.0797, delA=0.0209, dupA=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	400	(A)₁₃=1.000	del(A)₇=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000
Allele Frequency Aggregator	African	Sub	268	(A)₁₃=1.000	del(A)₇=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000
Allele Frequency Aggregator	Other	Sub	184	(A)₁₃=0.995	del(A)₇=0.000, delAAA=0.000, delAA=0.005, delA=0.000, dupA=0.000
Allele Frequency Aggregator	Latin American 1	Sub	74	(A)₁₃=1.00	del(A)₇=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00
Allele Frequency Aggregator	Asian	Sub	50	(A)₁₃=1.00	del(A)₇=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00
Allele Frequency Aggregator	South Asian	Sub	36	(A)₁₃=1.00	del(A)₇=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00
1000Genomes	Global	Study-wide	4369	(A)₁₃=0.6592	delAA=0.3408
1000Genomes	African	Sub	986	(A)₁₃=0.292	delAA=0.708
1000Genomes	Europe	Sub	933	(A)₁₃=0.800	delAA=0.200
1000Genomes	East Asian	Sub	928	(A)₁₃=0.739	delAA=0.261
1000Genomes	South Asian	Sub	908	(A)₁₃=0.720	delAA=0.280
1000Genomes	American	Sub	614	(A)₁₃=0.824	delAA=0.176
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	(A)₁₃=0.8062	delAA=0.1938
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	(A)₁₃=0.8050	delAA=0.1950
The Danish reference pan genome	Danish	Study-wide	40	(A)₁₃=0.70	delAA=0.30

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 3	NC_000003.12:g.39480047_39480053del
GRCh38.p14 chr 3	NC_000003.12:g.39480050_39480053del
GRCh38.p14 chr 3	NC_000003.12:g.39480051_39480053del
GRCh38.p14 chr 3	NC_000003.12:g.39480052_39480053del
GRCh38.p14 chr 3	NC_000003.12:g.39480053del
GRCh38.p14 chr 3	NC_000003.12:g.39480053dup
GRCh38.p14 chr 3	NC_000003.12:g.39480052_39480053dup
GRCh38.p14 chr 3	NC_000003.12:g.39480046_39480053dup
GRCh37.p13 chr 3	NC_000003.11:g.39521538_39521544del
GRCh37.p13 chr 3	NC_000003.11:g.39521541_39521544del
GRCh37.p13 chr 3	NC_000003.11:g.39521542_39521544del
GRCh37.p13 chr 3	NC_000003.11:g.39521543_39521544del
GRCh37.p13 chr 3	NC_000003.11:g.39521544del
GRCh37.p13 chr 3	NC_000003.11:g.39521544dup
GRCh37.p13 chr 3	NC_000003.11:g.39521543_39521544dup
GRCh37.p13 chr 3	NC_000003.11:g.39521537_39521544dup

Gene: MOBP, myelin associated oligodendrocyte basic protein (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
MOBP transcript variant 2	NM_001278323.2:c.-5+12307… NM_001278323.2:c.-5+12307_-5+12313del	N/A	Intron Variant
MOBP transcript variant 1	NM_001278322.2:c.-87_-75=	N/A	5 Prime UTR Variant
MOBP transcript variant 3	NM_182935.4:c.-87_-75=	N/A	5 Prime UTR Variant
MOBP transcript variant 8	NM_001393704.1:c.-87_-75=	N/A	5 Prime UTR Variant
MOBP transcript variant 7	NR_103506.2:n.69_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 7	NR_103506.2:n.72_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 7	NR_103506.2:n.73_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 7	NR_103506.2:n.74_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 7	NR_103506.2:n.75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 7	NR_103506.2:n.75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 7	NR_103506.2:n.74_75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 7	NR_103506.2:n.68_75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 4	NR_003090.3:n.69_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 4	NR_003090.3:n.72_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 4	NR_003090.3:n.73_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 4	NR_003090.3:n.74_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 4	NR_003090.3:n.75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 4	NR_003090.3:n.75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 4	NR_003090.3:n.74_75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 4	NR_003090.3:n.68_75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 5	NR_103504.2:n.69_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 5	NR_103504.2:n.72_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 5	NR_103504.2:n.73_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 5	NR_103504.2:n.74_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 5	NR_103504.2:n.75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 5	NR_103504.2:n.75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 5	NR_103504.2:n.74_75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 5	NR_103504.2:n.68_75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 6	NR_103505.2:n.69_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 6	NR_103505.2:n.72_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 6	NR_103505.2:n.73_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 6	NR_103505.2:n.74_75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 6	NR_103505.2:n.75del	N/A	Non Coding Transcript Variant
MOBP transcript variant 6	NR_103505.2:n.75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 6	NR_103505.2:n.74_75dup	N/A	Non Coding Transcript Variant
MOBP transcript variant 6	NR_103505.2:n.68_75dup	N/A	Non Coding Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₃=	del(A)₇	del(A)₄	delAAA	delAA	delA	dupA	dupAA	dup(A)₈
GRCh38.p14 chr 3	NC_000003.12:g.39480041_39480053=	NC_000003.12:g.39480047_39480053del	NC_000003.12:g.39480050_39480053del	NC_000003.12:g.39480051_39480053del	NC_000003.12:g.39480052_39480053del	NC_000003.12:g.39480053del	NC_000003.12:g.39480053dup	NC_000003.12:g.39480052_39480053dup	NC_000003.12:g.39480046_39480053dup
GRCh37.p13 chr 3	NC_000003.11:g.39521532_39521544=	NC_000003.11:g.39521538_39521544del	NC_000003.11:g.39521541_39521544del	NC_000003.11:g.39521542_39521544del	NC_000003.11:g.39521543_39521544del	NC_000003.11:g.39521544del	NC_000003.11:g.39521544dup	NC_000003.11:g.39521543_39521544dup	NC_000003.11:g.39521537_39521544dup
MOBP transcript variant 3	NM_182935.4:c.-87_-75=	NM_182935.4:c.-81_-75del	NM_182935.4:c.-78_-75del	NM_182935.4:c.-77_-75del	NM_182935.4:c.-76_-75del	NM_182935.4:c.-75del	NM_182935.4:c.-75dup	NM_182935.4:c.-76_-75dup	NM_182935.4:c.-82_-75dup
MOBP transcript variant 3	NM_182935.3:c.-87_-75=	NM_182935.3:c.-81_-75del	NM_182935.3:c.-78_-75del	NM_182935.3:c.-77_-75del	NM_182935.3:c.-76_-75del	NM_182935.3:c.-75del	NM_182935.3:c.-75dup	NM_182935.3:c.-76_-75dup	NM_182935.3:c.-82_-75dup
MOBP transcript variant 4	NR_003090.3:n.63_75=	NR_003090.3:n.69_75del	NR_003090.3:n.72_75del	NR_003090.3:n.73_75del	NR_003090.3:n.74_75del	NR_003090.3:n.75del	NR_003090.3:n.75dup	NR_003090.3:n.74_75dup	NR_003090.3:n.68_75dup
MOBP transcript variant 4	NR_003090.2:n.170_182=	NR_003090.2:n.176_182del	NR_003090.2:n.179_182del	NR_003090.2:n.180_182del	NR_003090.2:n.181_182del	NR_003090.2:n.182del	NR_003090.2:n.182dup	NR_003090.2:n.181_182dup	NR_003090.2:n.175_182dup
MOBP transcript variant 6	NR_103505.2:n.63_75=	NR_103505.2:n.69_75del	NR_103505.2:n.72_75del	NR_103505.2:n.73_75del	NR_103505.2:n.74_75del	NR_103505.2:n.75del	NR_103505.2:n.75dup	NR_103505.2:n.74_75dup	NR_103505.2:n.68_75dup
MOBP transcript variant 6	NR_103505.1:n.170_182=	NR_103505.1:n.176_182del	NR_103505.1:n.179_182del	NR_103505.1:n.180_182del	NR_103505.1:n.181_182del	NR_103505.1:n.182del	NR_103505.1:n.182dup	NR_103505.1:n.181_182dup	NR_103505.1:n.175_182dup
MOBP transcript variant 5	NR_103504.2:n.63_75=	NR_103504.2:n.69_75del	NR_103504.2:n.72_75del	NR_103504.2:n.73_75del	NR_103504.2:n.74_75del	NR_103504.2:n.75del	NR_103504.2:n.75dup	NR_103504.2:n.74_75dup	NR_103504.2:n.68_75dup
MOBP transcript variant 5	NR_103504.1:n.170_182=	NR_103504.1:n.176_182del	NR_103504.1:n.179_182del	NR_103504.1:n.180_182del	NR_103504.1:n.181_182del	NR_103504.1:n.182del	NR_103504.1:n.182dup	NR_103504.1:n.181_182dup	NR_103504.1:n.175_182dup
MOBP transcript variant 1	NM_001278322.2:c.-87_-75=	NM_001278322.2:c.-81_-75del	NM_001278322.2:c.-78_-75del	NM_001278322.2:c.-77_-75del	NM_001278322.2:c.-76_-75del	NM_001278322.2:c.-75del	NM_001278322.2:c.-75dup	NM_001278322.2:c.-76_-75dup	NM_001278322.2:c.-82_-75dup
MOBP transcript variant 1	NM_001278322.1:c.-87_-75=	NM_001278322.1:c.-81_-75del	NM_001278322.1:c.-78_-75del	NM_001278322.1:c.-77_-75del	NM_001278322.1:c.-76_-75del	NM_001278322.1:c.-75del	NM_001278322.1:c.-75dup	NM_001278322.1:c.-76_-75dup	NM_001278322.1:c.-82_-75dup
MOBP transcript variant 7	NR_103506.2:n.63_75=	NR_103506.2:n.69_75del	NR_103506.2:n.72_75del	NR_103506.2:n.73_75del	NR_103506.2:n.74_75del	NR_103506.2:n.75del	NR_103506.2:n.75dup	NR_103506.2:n.74_75dup	NR_103506.2:n.68_75dup
MOBP transcript variant 7	NR_103506.1:n.170_182=	NR_103506.1:n.176_182del	NR_103506.1:n.179_182del	NR_103506.1:n.180_182del	NR_103506.1:n.181_182del	NR_103506.1:n.182del	NR_103506.1:n.182dup	NR_103506.1:n.181_182dup	NR_103506.1:n.175_182dup
MOBP transcript variant 8	NM_001393704.1:c.-87_-75=	NM_001393704.1:c.-81_-75del	NM_001393704.1:c.-78_-75del	NM_001393704.1:c.-77_-75del	NM_001393704.1:c.-76_-75del	NM_001393704.1:c.-75del	NM_001393704.1:c.-75dup	NM_001393704.1:c.-76_-75dup	NM_001393704.1:c.-82_-75dup
MOBP transcript variant 2	NM_001278323.2:c.-5+12301=	NM_001278323.2:c.-5+12307_-5+12313del	NM_001278323.2:c.-5+12310_-5+12313del	NM_001278323.2:c.-5+12311_-5+12313del	NM_001278323.2:c.-5+12312_-5+12313del	NM_001278323.2:c.-5+12313del	NM_001278323.2:c.-5+12313dup	NM_001278323.2:c.-5+12312_-5+12313dup	NM_001278323.2:c.-5+12306_-5+12313dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

53 SubSNP, 24 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss82119119	Sep 08, 2015 (146)
2	BUSHMAN	ss193667389	Mar 15, 2016 (147)
3	GMI	ss288346008	May 04, 2012 (137)
4	GMI	ss288346010	May 04, 2012 (137)
5	SSMP	ss663407164	Apr 01, 2015 (144)
6	1000GENOMES	ss1370236185	Aug 21, 2014 (142)
7	1000GENOMES	ss1370236188	Aug 21, 2014 (142)
8	EVA_GENOME_DK	ss1575922066	Apr 01, 2015 (144)
9	EVA_UK10K_ALSPAC	ss1703591731	Apr 01, 2015 (144)
10	EVA_UK10K_TWINSUK	ss1703591732	Apr 01, 2015 (144)
11	SWEGEN	ss2992164062	Nov 08, 2017 (151)
12	EVA_DECODE	ss3709051361	Jul 13, 2019 (153)
13	EVA_DECODE	ss3709051362	Jul 13, 2019 (153)
14	EVA_DECODE	ss3709051363	Jul 13, 2019 (153)
15	EVA_DECODE	ss3709051364	Jul 13, 2019 (153)
16	ACPOP	ss3729812967	Jul 13, 2019 (153)
17	ACPOP	ss3729812968	Jul 13, 2019 (153)
18	PACBIO	ss3784289288	Jul 13, 2019 (153)
19	PACBIO	ss3789809844	Jul 13, 2019 (153)
20	PACBIO	ss3794683659	Jul 13, 2019 (153)
21	KHV_HUMAN_GENOMES	ss3803066092	Jul 13, 2019 (153)
22	KHV_HUMAN_GENOMES	ss3803066093	Jul 13, 2019 (153)
23	EVA	ss3827766492	Apr 25, 2020 (154)
24	KOGIC	ss3951063877	Apr 25, 2020 (154)
25	KOGIC	ss3951063878	Apr 25, 2020 (154)
26	KOGIC	ss3951063879	Apr 25, 2020 (154)
27	FSA-LAB	ss3984247050	Apr 26, 2021 (155)
28	FSA-LAB	ss3984247051	Apr 26, 2021 (155)
29	EVA	ss3986022679	Apr 26, 2021 (155)
30	GNOMAD	ss4069420517	Apr 26, 2021 (155)
31	GNOMAD	ss4069420518	Apr 26, 2021 (155)
32	GNOMAD	ss4069420519	Apr 26, 2021 (155)
33	GNOMAD	ss4069420520	Apr 26, 2021 (155)
34	GNOMAD	ss4069420521	Apr 26, 2021 (155)
35	GNOMAD	ss4069420522	Apr 26, 2021 (155)
36	TOMMO_GENOMICS	ss5158728271	Apr 26, 2021 (155)
37	TOMMO_GENOMICS	ss5158728272	Apr 26, 2021 (155)
38	TOMMO_GENOMICS	ss5158728273	Apr 26, 2021 (155)
39	TOMMO_GENOMICS	ss5158728274	Apr 26, 2021 (155)
40	1000G_HIGH_COVERAGE	ss5253768266	Oct 13, 2022 (156)
41	1000G_HIGH_COVERAGE	ss5253768267	Oct 13, 2022 (156)
42	1000G_HIGH_COVERAGE	ss5253768268	Oct 13, 2022 (156)
43	1000G_HIGH_COVERAGE	ss5253768269	Oct 13, 2022 (156)
44	HUGCELL_USP	ss5453195268	Oct 13, 2022 (156)
45	HUGCELL_USP	ss5453195269	Oct 13, 2022 (156)
46	TOMMO_GENOMICS	ss5690256200	Oct 13, 2022 (156)
47	TOMMO_GENOMICS	ss5690256201	Oct 13, 2022 (156)
48	TOMMO_GENOMICS	ss5690256202	Oct 13, 2022 (156)
49	TOMMO_GENOMICS	ss5690256203	Oct 13, 2022 (156)
50	EVA	ss5825631215	Oct 13, 2022 (156)
51	TMC_SNPDB2	ss5846914369	Oct 13, 2022 (156)
52	EVA	ss5853578223	Oct 13, 2022 (156)
53	EVA	ss5960241040	Oct 13, 2022 (156)
54	1000Genomes	NC_000003.11 - 39521532	Oct 12, 2018 (152)
55	The Avon Longitudinal Study of Parents and Children	NC_000003.11 - 39521532	Oct 12, 2018 (152)
56	The Danish reference pan genome	NC_000003.11 - 39521532	Apr 25, 2020 (154)
57	gnomAD - Genomes Submission ignored due to conflicting rows: Row 105040899 (NC_000003.12:39480040::A 39/129998) Row 105040900 (NC_000003.12:39480040::AA 1/130034) Row 105040901 (NC_000003.12:39480040::AAAAAAAA 1/130036)...	-	Apr 26, 2021 (155)
58	gnomAD - Genomes Submission ignored due to conflicting rows: Row 105040899 (NC_000003.12:39480040::A 39/129998) Row 105040900 (NC_000003.12:39480040::AA 1/130034) Row 105040901 (NC_000003.12:39480040::AAAAAAAA 1/130036)...	-	Apr 26, 2021 (155)
59	gnomAD - Genomes Submission ignored due to conflicting rows: Row 105040899 (NC_000003.12:39480040::A 39/129998) Row 105040900 (NC_000003.12:39480040::AA 1/130034) Row 105040901 (NC_000003.12:39480040::AAAAAAAA 1/130036)...	-	Apr 26, 2021 (155)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 105040899 (NC_000003.12:39480040::A 39/129998) Row 105040900 (NC_000003.12:39480040::AA 1/130034) Row 105040901 (NC_000003.12:39480040::AAAAAAAA 1/130036)...	-	Apr 26, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 105040899 (NC_000003.12:39480040::A 39/129998) Row 105040900 (NC_000003.12:39480040::AA 1/130034) Row 105040901 (NC_000003.12:39480040::AAAAAAAA 1/130036)...	-	Apr 26, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 105040899 (NC_000003.12:39480040::A 39/129998) Row 105040900 (NC_000003.12:39480040::AA 1/130034) Row 105040901 (NC_000003.12:39480040::AAAAAAAA 1/130036)...	-	Apr 26, 2021 (155)
63	Korean Genome Project Submission ignored due to conflicting rows: Row 7441878 (NC_000003.12:39480040:AA: 281/1832) Row 7441879 (NC_000003.12:39480041:A: 167/1832) Row 7441880 (NC_000003.12:39480042::A 34/1832)	-	Apr 25, 2020 (154)
64	Korean Genome Project Submission ignored due to conflicting rows: Row 7441878 (NC_000003.12:39480040:AA: 281/1832) Row 7441879 (NC_000003.12:39480041:A: 167/1832) Row 7441880 (NC_000003.12:39480042::A 34/1832)	-	Apr 25, 2020 (154)
65	Korean Genome Project Submission ignored due to conflicting rows: Row 7441878 (NC_000003.12:39480040:AA: 281/1832) Row 7441879 (NC_000003.12:39480041:A: 167/1832) Row 7441880 (NC_000003.12:39480042::A 34/1832)	-	Apr 25, 2020 (154)
66	Northern Sweden Submission ignored due to conflicting rows: Row 3097832 (NC_000003.11:39521531:AA: 81/592) Row 3097833 (NC_000003.11:39521531:A: 14/592)	-	Jul 13, 2019 (153)
67	Northern Sweden Submission ignored due to conflicting rows: Row 3097832 (NC_000003.11:39521531:AA: 81/592) Row 3097833 (NC_000003.11:39521531:A: 14/592)	-	Jul 13, 2019 (153)
68	8.3KJPN Submission ignored due to conflicting rows: Row 16697578 (NC_000003.11:39521531:AA: 3530/16760) Row 16697579 (NC_000003.11:39521531:AAA: 7/16760) Row 16697580 (NC_000003.11:39521531:A: 725/16760)...	-	Apr 26, 2021 (155)
69	8.3KJPN Submission ignored due to conflicting rows: Row 16697578 (NC_000003.11:39521531:AA: 3530/16760) Row 16697579 (NC_000003.11:39521531:AAA: 7/16760) Row 16697580 (NC_000003.11:39521531:A: 725/16760)...	-	Apr 26, 2021 (155)
70	8.3KJPN Submission ignored due to conflicting rows: Row 16697578 (NC_000003.11:39521531:AA: 3530/16760) Row 16697579 (NC_000003.11:39521531:AAA: 7/16760) Row 16697580 (NC_000003.11:39521531:A: 725/16760)...	-	Apr 26, 2021 (155)
71	8.3KJPN Submission ignored due to conflicting rows: Row 16697578 (NC_000003.11:39521531:AA: 3530/16760) Row 16697579 (NC_000003.11:39521531:AAA: 7/16760) Row 16697580 (NC_000003.11:39521531:A: 725/16760)...	-	Apr 26, 2021 (155)
72	14KJPN Submission ignored due to conflicting rows: Row 24093304 (NC_000003.12:39480040:AA: 5979/28258) Row 24093305 (NC_000003.12:39480040:A: 1232/28258) Row 24093306 (NC_000003.12:39480040:AAA: 12/28258)...	-	Oct 13, 2022 (156)
73	14KJPN Submission ignored due to conflicting rows: Row 24093304 (NC_000003.12:39480040:AA: 5979/28258) Row 24093305 (NC_000003.12:39480040:A: 1232/28258) Row 24093306 (NC_000003.12:39480040:AAA: 12/28258)...	-	Oct 13, 2022 (156)
74	14KJPN Submission ignored due to conflicting rows: Row 24093304 (NC_000003.12:39480040:AA: 5979/28258) Row 24093305 (NC_000003.12:39480040:A: 1232/28258) Row 24093306 (NC_000003.12:39480040:AAA: 12/28258)...	-	Oct 13, 2022 (156)
75	14KJPN Submission ignored due to conflicting rows: Row 24093304 (NC_000003.12:39480040:AA: 5979/28258) Row 24093305 (NC_000003.12:39480040:A: 1232/28258) Row 24093306 (NC_000003.12:39480040:AAA: 12/28258)...	-	Oct 13, 2022 (156)
76	UK 10K study - Twins	NC_000003.11 - 39521532	Oct 12, 2018 (152)
77	ALFA	NC_000003.12 - 39480041	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs72362654	May 11, 2012 (137)
rs72446151	May 11, 2012 (137)
rs112679352	May 11, 2012 (137)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
3561410958	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAA	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAA	(self)
ss5846914369	NC_000003.12:39480040:AAAA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAA
ss3984247050, ss5158728272	NC_000003.11:39521531:AAA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAA	(self)
ss3709051364, ss4069420522, ss5253768269, ss5690256202	NC_000003.12:39480040:AAA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAA	(self)
3561410958	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAA	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAA	(self)
ss288346010	NC_000003.10:39496535:AA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
14810031, 8230473, 819881, 8230473, ss663407164, ss1370236185, ss1575922066, ss1703591731, ss1703591732, ss2992164062, ss3729812967, ss3784289288, ss3789809844, ss3794683659, ss3827766492, ss3986022679, ss5158728271, ss5825631215, ss5960241040	NC_000003.11:39521531:AA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss3984247051	NC_000003.11:39521532:AA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss3803066093, ss3951063877, ss4069420521, ss5253768266, ss5453195268, ss5690256200, ss5853578223	NC_000003.12:39480040:AA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
3561410958	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAA	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss3709051363	NC_000003.12:39480041:AA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss193667389	NT_022517.18:39461531:AA:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss82119119	NC_000003.9:39496547:A:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss288346008	NC_000003.10:39496535:A:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss3729812968, ss5158728273	NC_000003.11:39521531:A:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss1370236188	NC_000003.11:39521532:A:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss4069420520, ss5253768267, ss5453195269, ss5690256201	NC_000003.12:39480040:A:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
3561410958	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss3803066092, ss3951063878	NC_000003.12:39480041:A:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss3709051362	NC_000003.12:39480042:A:	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss5158728274	NC_000003.11:39521531::A	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss4069420517, ss5253768268, ss5690256203	NC_000003.12:39480040::A	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
3561410958	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3951063879	NC_000003.12:39480042::A	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3709051361	NC_000003.12:39480043::A	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss4069420518	NC_000003.12:39480040::AA	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss4069420519	NC_000003.12:39480040::AAAAAAAA	NC_000003.12:39480040:AAAAAAAAAAAA… NC_000003.12:39480040:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs59524140

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs59524140