Name: rs5846631
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs5846631

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr3:9393882-9393895 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(A)₅ / delAAA / delAA / delA / …
del(A)₅ / delAAA / delAA / delA / dupA / dupAA / dupAAA / dup(A)₇
Variation Type: Indel Insertion and Deletion
Frequency: (A)₁₄=0.1785 (833/4666, ALFA)
(A)₁₄=0.0394 (152/3854, ALSPAC)
(A)₁₄=0.0418 (155/3708, TWINSUK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: THUMPD3-AS1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	4666	AAAAAAAAAAAAAA=0.1785	AAAAAAAAA=0.0000, AAAAAAAAAAA=0.0000, AAAAAAAAAAAA=0.0287, AAAAAAAAAAAAA=0.7928, AAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAA=0.0000	0.082577	0.71098	0.206443	32
European	Sub	4362	AAAAAAAAAAAAAA=0.1229	AAAAAAAAA=0.0000, AAAAAAAAAAA=0.0000, AAAAAAAAAAAA=0.0307, AAAAAAAAAAAAA=0.8464, AAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAA=0.0000	0.016569	0.762183	0.221248	0
African	Sub	266	AAAAAAAAAAAAAA=1.000	AAAAAAAAA=0.000, AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A
African Others	Sub	16	AAAAAAAAAAAAAA=1.00	AAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
African American	Sub	250	AAAAAAAAAAAAAA=1.000	AAAAAAAAA=0.000, AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A
Asian	Sub	14	AAAAAAAAAAAAAA=1.00	AAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	10	AAAAAAAAAAAAAA=1.0	AAAAAAAAA=0.0, AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
Other Asian	Sub	4	AAAAAAAAAAAAAA=1.0	AAAAAAAAA=0.0, AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
Latin American 1	Sub	0	AAAAAAAAAAAAAA=0	AAAAAAAAA=0, AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Latin American 2	Sub	6	AAAAAAAAAAAAAA=1.0	AAAAAAAAA=0.0, AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
South Asian	Sub	0	AAAAAAAAAAAAAA=0	AAAAAAAAA=0, AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Other	Sub	18	AAAAAAAAAAAAAA=0.61	AAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.39, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00	0.555556	0.333333	0.111111	3

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	4666	(A)₁₄=0.1785	del(A)₅=0.0000, delAAA=0.0000, delAA=0.0287, delA=0.7928, dupA=0.0000, dupAAA=0.0000
Allele Frequency Aggregator	European	Sub	4362	(A)₁₄=0.1229	del(A)₅=0.0000, delAAA=0.0000, delAA=0.0307, delA=0.8464, dupA=0.0000, dupAAA=0.0000
Allele Frequency Aggregator	African	Sub	266	(A)₁₄=1.000	del(A)₅=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000, dupAAA=0.000
Allele Frequency Aggregator	Other	Sub	18	(A)₁₄=0.61	del(A)₅=0.00, delAAA=0.00, delAA=0.00, delA=0.39, dupA=0.00, dupAAA=0.00
Allele Frequency Aggregator	Asian	Sub	14	(A)₁₄=1.00	del(A)₅=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAAA=0.00
Allele Frequency Aggregator	Latin American 2	Sub	6	(A)₁₄=1.0	del(A)₅=0.0, delAAA=0.0, delAA=0.0, delA=0.0, dupA=0.0, dupAAA=0.0
Allele Frequency Aggregator	Latin American 1	Sub	0	(A)₁₄=0	del(A)₅=0, delAAA=0, delAA=0, delA=0, dupA=0, dupAAA=0
Allele Frequency Aggregator	South Asian	Sub	0	(A)₁₄=0	del(A)₅=0, delAAA=0, delAA=0, delA=0, dupA=0, dupAAA=0
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	(A)₁₄=0.0394	delA=0.9606
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	(A)₁₄=0.0418	delA=0.9582

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 3	NC_000003.12:g.9393891_9393895del
GRCh38.p14 chr 3	NC_000003.12:g.9393893_9393895del
GRCh38.p14 chr 3	NC_000003.12:g.9393894_9393895del
GRCh38.p14 chr 3	NC_000003.12:g.9393895del
GRCh38.p14 chr 3	NC_000003.12:g.9393895dup
GRCh38.p14 chr 3	NC_000003.12:g.9393894_9393895dup
GRCh38.p14 chr 3	NC_000003.12:g.9393893_9393895dup
GRCh38.p14 chr 3	NC_000003.12:g.9393889_9393895dup
GRCh37.p13 chr 3	NC_000003.11:g.9435575_9435579del
GRCh37.p13 chr 3	NC_000003.11:g.9435577_9435579del
GRCh37.p13 chr 3	NC_000003.11:g.9435578_9435579del
GRCh37.p13 chr 3	NC_000003.11:g.9435579del
GRCh37.p13 chr 3	NC_000003.11:g.9435579dup
GRCh37.p13 chr 3	NC_000003.11:g.9435578_9435579dup
GRCh37.p13 chr 3	NC_000003.11:g.9435577_9435579dup
GRCh37.p13 chr 3	NC_000003.11:g.9435573_9435579dup
SETD5 RefSeqGene	NG_034132.1:g.1192_1196del
SETD5 RefSeqGene	NG_034132.1:g.1194_1196del
SETD5 RefSeqGene	NG_034132.1:g.1195_1196del
SETD5 RefSeqGene	NG_034132.1:g.1196del
SETD5 RefSeqGene	NG_034132.1:g.1196dup
SETD5 RefSeqGene	NG_034132.1:g.1195_1196dup
SETD5 RefSeqGene	NG_034132.1:g.1194_1196dup
SETD5 RefSeqGene	NG_034132.1:g.1190_1196dup

Gene: THUMPD3-AS1, THUMPD3 antisense RNA 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
THUMPD3-AS1 transcript variant 2	NR_027007.3:n.	N/A	Intron Variant
THUMPD3-AS1 transcript variant 1	NR_132780.1:n.	N/A	Intron Variant
THUMPD3-AS1 transcript variant 3	NR_132781.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₄=	del(A)₅	delAAA	delAA	delA	dupA	dupAA	dupAAA	dup(A)₇
GRCh38.p14 chr 3	NC_000003.12:g.9393882_9393895=	NC_000003.12:g.9393891_9393895del	NC_000003.12:g.9393893_9393895del	NC_000003.12:g.9393894_9393895del	NC_000003.12:g.9393895del	NC_000003.12:g.9393895dup	NC_000003.12:g.9393894_9393895dup	NC_000003.12:g.9393893_9393895dup	NC_000003.12:g.9393889_9393895dup
GRCh37.p13 chr 3	NC_000003.11:g.9435566_9435579=	NC_000003.11:g.9435575_9435579del	NC_000003.11:g.9435577_9435579del	NC_000003.11:g.9435578_9435579del	NC_000003.11:g.9435579del	NC_000003.11:g.9435579dup	NC_000003.11:g.9435578_9435579dup	NC_000003.11:g.9435577_9435579dup	NC_000003.11:g.9435573_9435579dup
SETD5 RefSeqGene	NG_034132.1:g.1183_1196=	NG_034132.1:g.1192_1196del	NG_034132.1:g.1194_1196del	NG_034132.1:g.1195_1196del	NG_034132.1:g.1196del	NG_034132.1:g.1196dup	NG_034132.1:g.1195_1196dup	NG_034132.1:g.1194_1196dup	NG_034132.1:g.1190_1196dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

60 SubSNP, 18 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	ABI	ss41993258	Mar 15, 2006 (137)
2	HGSV	ss77861571	Sep 08, 2015 (146)
3	HGSV	ss77942553	Sep 08, 2015 (146)
4	HGSV	ss80214665	Sep 08, 2015 (146)
5	HUMANGENOME_JCVI	ss95309841	Dec 05, 2013 (138)
6	BCMHGSC_JDW	ss103663459	Dec 01, 2009 (131)
7	BUSHMAN	ss193657165	Jul 04, 2010 (137)
8	BL	ss255985970	May 09, 2011 (137)
9	GMI	ss287720331	May 09, 2011 (137)
10	GMI	ss288321792	May 04, 2012 (137)
11	PJP	ss295087342	May 09, 2011 (137)
12	PJP	ss295087343	May 09, 2011 (137)
13	SSMP	ss663436257	Apr 01, 2015 (144)
14	BILGI_BIOE	ss666196714	Apr 25, 2013 (138)
15	EVA_UK10K_ALSPAC	ss1703506712	Apr 01, 2015 (144)
16	EVA_UK10K_TWINSUK	ss1703506727	Apr 01, 2015 (144)
17	HAMMER_LAB	ss1798834672	Sep 08, 2015 (146)
18	SYSTEMSBIOZJU	ss2625154231	Nov 08, 2017 (151)
19	SWEGEN	ss2991806275	Nov 08, 2017 (151)
20	MCHAISSO	ss3064895916	Nov 08, 2017 (151)
21	MCHAISSO	ss3065866300	Nov 08, 2017 (151)
22	BEROUKHIMLAB	ss3644119410	Oct 11, 2018 (152)
23	BIOINF_KMB_FNS_UNIBA	ss3645695955	Oct 11, 2018 (152)
24	URBANLAB	ss3647337663	Oct 11, 2018 (152)
25	EVA_DECODE	ss3708607414	Jul 13, 2019 (153)
26	EVA_DECODE	ss3708607415	Jul 13, 2019 (153)
27	EVA_DECODE	ss3708607416	Jul 13, 2019 (153)
28	EVA_DECODE	ss3708607417	Jul 13, 2019 (153)
29	ACPOP	ss3729619891	Jul 13, 2019 (153)
30	ACPOP	ss3729619892	Jul 13, 2019 (153)
31	PACBIO	ss3784231354	Jul 13, 2019 (153)
32	PACBIO	ss3784231355	Jul 13, 2019 (153)
33	PACBIO	ss3789760643	Jul 13, 2019 (153)
34	PACBIO	ss3794634375	Jul 13, 2019 (153)
35	KHV_HUMAN_GENOMES	ss3802793966	Jul 13, 2019 (153)
36	EVA	ss3827654463	Apr 25, 2020 (154)
37	EVA	ss3842672629	Apr 25, 2020 (154)
38	KOGIC	ss3950632631	Apr 25, 2020 (154)
39	KOGIC	ss3950632632	Apr 25, 2020 (154)
40	GNOMAD	ss4065604150	Apr 26, 2021 (155)
41	GNOMAD	ss4065604151	Apr 26, 2021 (155)
42	GNOMAD	ss4065604152	Apr 26, 2021 (155)
43	GNOMAD	ss4065604153	Apr 26, 2021 (155)
44	GNOMAD	ss4065604154	Apr 26, 2021 (155)
45	TOMMO_GENOMICS	ss5157729795	Apr 26, 2021 (155)
46	TOMMO_GENOMICS	ss5157729796	Apr 26, 2021 (155)
47	TOMMO_GENOMICS	ss5157729797	Apr 26, 2021 (155)
48	1000G_HIGH_COVERAGE	ss5252997091	Oct 13, 2022 (156)
49	1000G_HIGH_COVERAGE	ss5252997092	Oct 13, 2022 (156)
50	1000G_HIGH_COVERAGE	ss5252997093	Oct 13, 2022 (156)
51	HUGCELL_USP	ss5452504200	Oct 13, 2022 (156)
52	HUGCELL_USP	ss5452504201	Oct 13, 2022 (156)
53	TOMMO_GENOMICS	ss5688977089	Oct 13, 2022 (156)
54	TOMMO_GENOMICS	ss5688977090	Oct 13, 2022 (156)
55	TOMMO_GENOMICS	ss5688977091	Oct 13, 2022 (156)
56	EVA	ss5825326508	Oct 13, 2022 (156)
57	EVA	ss5825326509	Oct 13, 2022 (156)
58	EVA	ss5853484619	Oct 13, 2022 (156)
59	EVA	ss5867571280	Oct 13, 2022 (156)
60	EVA	ss5959772412	Oct 13, 2022 (156)
61	The Avon Longitudinal Study of Parents and Children	NC_000003.11 - 9435566	Oct 11, 2018 (152)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 98617234 (NC_000003.12:9393881::A 61/130290) Row 98617235 (NC_000003.12:9393881::AA 1/130298) Row 98617236 (NC_000003.12:9393881:A: 110963/130272)...	-	Apr 26, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 98617234 (NC_000003.12:9393881::A 61/130290) Row 98617235 (NC_000003.12:9393881::AA 1/130298) Row 98617236 (NC_000003.12:9393881:A: 110963/130272)...	-	Apr 26, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 98617234 (NC_000003.12:9393881::A 61/130290) Row 98617235 (NC_000003.12:9393881::AA 1/130298) Row 98617236 (NC_000003.12:9393881:A: 110963/130272)...	-	Apr 26, 2021 (155)
65	gnomAD - Genomes Submission ignored due to conflicting rows: Row 98617234 (NC_000003.12:9393881::A 61/130290) Row 98617235 (NC_000003.12:9393881::AA 1/130298) Row 98617236 (NC_000003.12:9393881:A: 110963/130272)...	-	Apr 26, 2021 (155)
66	gnomAD - Genomes Submission ignored due to conflicting rows: Row 98617234 (NC_000003.12:9393881::A 61/130290) Row 98617235 (NC_000003.12:9393881::AA 1/130298) Row 98617236 (NC_000003.12:9393881:A: 110963/130272)...	-	Apr 26, 2021 (155)
67	Korean Genome Project Submission ignored due to conflicting rows: Row 7010632 (NC_000003.12:9393881:A: 1187/1830) Row 7010633 (NC_000003.12:9393882::A 13/1830)	-	Apr 25, 2020 (154)
68	Korean Genome Project Submission ignored due to conflicting rows: Row 7010632 (NC_000003.12:9393881:A: 1187/1830) Row 7010633 (NC_000003.12:9393882::A 13/1830)	-	Apr 25, 2020 (154)
69	Northern Sweden Submission ignored due to conflicting rows: Row 2904756 (NC_000003.11:9435565:A: 527/586) Row 2904757 (NC_000003.11:9435565:AA: 7/586)	-	Jul 13, 2019 (153)
70	Northern Sweden Submission ignored due to conflicting rows: Row 2904756 (NC_000003.11:9435565:A: 527/586) Row 2904757 (NC_000003.11:9435565:AA: 7/586)	-	Jul 13, 2019 (153)
71	8.3KJPN Submission ignored due to conflicting rows: Row 15699102 (NC_000003.11:9435565:A: 11031/16760) Row 15699103 (NC_000003.11:9435565:AA: 8/16760) Row 15699104 (NC_000003.11:9435565::A 12/16760)	-	Apr 26, 2021 (155)
72	8.3KJPN Submission ignored due to conflicting rows: Row 15699102 (NC_000003.11:9435565:A: 11031/16760) Row 15699103 (NC_000003.11:9435565:AA: 8/16760) Row 15699104 (NC_000003.11:9435565::A 12/16760)	-	Apr 26, 2021 (155)
73	8.3KJPN Submission ignored due to conflicting rows: Row 15699102 (NC_000003.11:9435565:A: 11031/16760) Row 15699103 (NC_000003.11:9435565:AA: 8/16760) Row 15699104 (NC_000003.11:9435565::A 12/16760)	-	Apr 26, 2021 (155)
74	14KJPN Submission ignored due to conflicting rows: Row 22814193 (NC_000003.12:9393881:A: 18423/28248) Row 22814194 (NC_000003.12:9393881:AA: 14/28248) Row 22814195 (NC_000003.12:9393881::A 17/28248)	-	Oct 13, 2022 (156)
75	14KJPN Submission ignored due to conflicting rows: Row 22814193 (NC_000003.12:9393881:A: 18423/28248) Row 22814194 (NC_000003.12:9393881:AA: 14/28248) Row 22814195 (NC_000003.12:9393881::A 17/28248)	-	Oct 13, 2022 (156)
76	14KJPN Submission ignored due to conflicting rows: Row 22814193 (NC_000003.12:9393881:A: 18423/28248) Row 22814194 (NC_000003.12:9393881:AA: 14/28248) Row 22814195 (NC_000003.12:9393881::A 17/28248)	-	Oct 13, 2022 (156)
77	UK 10K study - Twins	NC_000003.11 - 9435566	Oct 11, 2018 (152)
78	ALFA	NC_000003.12 - 9393882	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs36002069	May 11, 2012 (137)
rs55796129	May 11, 2012 (137)
rs58544998	May 24, 2008 (130)
rs138414700	May 04, 2012 (137)
rs374973749	May 13, 2013 (138)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
16493859757	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAA	(self)
ss3708607417, ss4065604154	NC_000003.12:9393881:AAA:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAA	(self)
16493859757	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss2991806275, ss3729619892, ss3784231354, ss5157729796, ss5825326509	NC_000003.11:9435565:AA:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss4065604153, ss5252997092, ss5452504201, ss5688977090	NC_000003.12:9393881:AA:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
16493859757	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss3708607416	NC_000003.12:9393882:AA:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss103663459	NT_022517.18:9375577:AA:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss77861571, ss77942553, ss80214665	NC_000003.9:9410578:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss255985970, ss288321792, ss295087342	NC_000003.10:9410565:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss295087343	NC_000003.10:9410578:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
7697911, 7697911, ss663436257, ss666196714, ss1703506712, ss1703506727, ss1798834672, ss2625154231, ss3644119410, ss3729619891, ss3784231355, ss3789760643, ss3794634375, ss3827654463, ss5157729795, ss5825326508, ss5959772412	NC_000003.11:9435565:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss3064895916, ss3065866300, ss3645695955, ss3647337663, ss3802793966, ss3842672629, ss3950632631, ss4065604152, ss5252997091, ss5452504200, ss5688977089, ss5853484619, ss5867571280	NC_000003.12:9393881:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
16493859757	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss3708607415	NC_000003.12:9393883:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss41993258, ss287720331	NT_022517.18:9375565:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss95309841	NT_022517.18:9375578:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss193657165	NT_022517.19:9383881:A:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss5157729797	NC_000003.11:9435565::A	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss4065604150, ss5252997093, ss5688977091	NC_000003.12:9393881::A	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
16493859757	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss3950632632	NC_000003.12:9393882::A	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss4065604151	NC_000003.12:9393881::AA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
16493859757	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
ss3708607414	NC_000003.12:9393884::AAAAAAA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)

Removed from this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Destination RSIDs
ss3382292318	NC_000003.12:9393881::AAA	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
ss3382292321	NC_000003.12:9393881:AAAAA:	NC_000003.12:9393881:AAAAAAAAAAAAA… NC_000003.12:9393881:AAAAAAAAAAAAAA:AAAAAAAAA

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs5846631

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs5846631