Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs56863489

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr1:16457708-16457729 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
del(T)14 / del(T)11 / del(T)10 / d…

del(T)14 / del(T)11 / del(T)10 / del(T)8 / del(T)7 / del(T)5 / del(T)4 / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)4 / dup(T)5 / dup(T)6 / dup(T)7 / dup(T)8 / dup(T)9 / dup(T)10 / dup(T)18 / dup(T)19 / ins(T)27 / ins(T)38

Variation Type
Indel Insertion and Deletion
Frequency
dupT=0.01841 (272/14771, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
NECAP2 : Intron Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 14771 TTTTTTTTTTTTTTTTTTTTTT=0.97150 TTTTTTTT=0.00000, TTTTTTTTTTT=0.00000, TTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTTTTTT=0.01841, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00102, TTTTTTTTTTTTTTTTTTTTTTTT=0.00670, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00088, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00149, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00000 0.969521 0.006096 0.024383 32
European Sub 12705 TTTTTTTTTTTTTTTTTTTTTT=0.96686 TTTTTTTT=0.00000, TTTTTTTTTTT=0.00000, TTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTTTTTT=0.02141, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00118, TTTTTTTTTTTTTTTTTTTTTTTT=0.00779, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00102, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00173, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00000 0.96443 0.007114 0.028456 32
African Sub 918 TTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000 1.0 0.0 0.0 N/A
African Others Sub 32 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
African American Sub 886 TTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000 1.0 0.0 0.0 N/A
Asian Sub 100 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
East Asian Sub 76 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 24 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 88 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
Latin American 2 Sub 528 TTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000 1.0 0.0 0.0 N/A
South Asian Sub 90 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
Other Sub 342 TTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000 1.0 0.0 0.0 N/A


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
Allele Frequency Aggregator Total Global 14771 (T)22=0.97150 del(T)14=0.00000, del(T)11=0.00000, del(T)10=0.00000, del(T)8=0.00000, del(T)7=0.00000, del(T)4=0.00000, delTTT=0.00000, delTT=0.00000, delT=0.00000, dupT=0.01841, dupTT=0.00670, dupTTT=0.00088, dup(T)4=0.00000, dup(T)8=0.00149, dup(T)19=0.00102
Allele Frequency Aggregator European Sub 12705 (T)22=0.96686 del(T)14=0.00000, del(T)11=0.00000, del(T)10=0.00000, del(T)8=0.00000, del(T)7=0.00000, del(T)4=0.00000, delTTT=0.00000, delTT=0.00000, delT=0.00000, dupT=0.02141, dupTT=0.00779, dupTTT=0.00102, dup(T)4=0.00000, dup(T)8=0.00173, dup(T)19=0.00118
Allele Frequency Aggregator African Sub 918 (T)22=1.000 del(T)14=0.000, del(T)11=0.000, del(T)10=0.000, del(T)8=0.000, del(T)7=0.000, del(T)4=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)4=0.000, dup(T)8=0.000, dup(T)19=0.000
Allele Frequency Aggregator Latin American 2 Sub 528 (T)22=1.000 del(T)14=0.000, del(T)11=0.000, del(T)10=0.000, del(T)8=0.000, del(T)7=0.000, del(T)4=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)4=0.000, dup(T)8=0.000, dup(T)19=0.000
Allele Frequency Aggregator Other Sub 342 (T)22=1.000 del(T)14=0.000, del(T)11=0.000, del(T)10=0.000, del(T)8=0.000, del(T)7=0.000, del(T)4=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)4=0.000, dup(T)8=0.000, dup(T)19=0.000
Allele Frequency Aggregator Asian Sub 100 (T)22=1.00 del(T)14=0.00, del(T)11=0.00, del(T)10=0.00, del(T)8=0.00, del(T)7=0.00, del(T)4=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)4=0.00, dup(T)8=0.00, dup(T)19=0.00
Allele Frequency Aggregator South Asian Sub 90 (T)22=1.00 del(T)14=0.00, del(T)11=0.00, del(T)10=0.00, del(T)8=0.00, del(T)7=0.00, del(T)4=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)4=0.00, dup(T)8=0.00, dup(T)19=0.00
Allele Frequency Aggregator Latin American 1 Sub 88 (T)22=1.00 del(T)14=0.00, del(T)11=0.00, del(T)10=0.00, del(T)8=0.00, del(T)7=0.00, del(T)4=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)4=0.00, dup(T)8=0.00, dup(T)19=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 1 NC_000001.11:g.16457716_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457719_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457720_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457722_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457723_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457725_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457726_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457727_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457728_16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457729del
GRCh38.p14 chr 1 NC_000001.11:g.16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457728_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457727_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457726_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457725_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457724_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457723_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457722_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457721_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457720_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457712_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457711_16457729dup
GRCh38.p14 chr 1 NC_000001.11:g.16457729_16457730insTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh38.p14 chr 1 NC_000001.11:g.16457729_16457730insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 1 NC_000001.10:g.16784211_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784214_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784215_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784217_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784218_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784220_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784221_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784222_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784223_16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784224del
GRCh37.p13 chr 1 NC_000001.10:g.16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784223_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784222_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784221_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784220_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784219_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784218_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784217_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784216_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784215_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784207_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784206_16784224dup
GRCh37.p13 chr 1 NC_000001.10:g.16784224_16784225insTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 1 NC_000001.10:g.16784224_16784225insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 RefSeqGene NG_047165.1:g.22045_22058del
NECAP2 RefSeqGene NG_047165.1:g.22048_22058del
NECAP2 RefSeqGene NG_047165.1:g.22049_22058del
NECAP2 RefSeqGene NG_047165.1:g.22051_22058del
NECAP2 RefSeqGene NG_047165.1:g.22052_22058del
NECAP2 RefSeqGene NG_047165.1:g.22054_22058del
NECAP2 RefSeqGene NG_047165.1:g.22055_22058del
NECAP2 RefSeqGene NG_047165.1:g.22056_22058del
NECAP2 RefSeqGene NG_047165.1:g.22057_22058del
NECAP2 RefSeqGene NG_047165.1:g.22058del
NECAP2 RefSeqGene NG_047165.1:g.22058dup
NECAP2 RefSeqGene NG_047165.1:g.22057_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22056_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22055_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22054_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22053_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22052_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22051_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22050_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22049_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22041_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22040_22058dup
NECAP2 RefSeqGene NG_047165.1:g.22058_22059insTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 RefSeqGene NG_047165.1:g.22058_22059insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261981_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261984_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261985_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261987_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261988_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261990_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261991_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261992_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261993_261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261994del
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261993_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261992_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261991_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261990_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261989_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261988_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261987_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261986_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261985_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261977_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261976_261994dup
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261994_261995insTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261994_261995insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene: NECAP2, NECAP endocytosis associated 2 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
NECAP2 transcript variant 2 NM_001145277.2:c.668-1126…

NM_001145277.2:c.668-1126_668-1113del

N/A Intron Variant
NECAP2 transcript variant 3 NM_001145278.2:c.666-1126…

NM_001145278.2:c.666-1126_666-1113del

N/A Intron Variant
NECAP2 transcript variant 1 NM_018090.5:c.744-1126_74…

NM_018090.5:c.744-1126_744-1113del

N/A Intron Variant
NECAP2 transcript variant X1 XM_047424713.1:c.509-1126…

XM_047424713.1:c.509-1126_509-1113del

N/A Intron Variant
NECAP2 transcript variant X2 XM_047424715.1:c. N/A Genic Downstream Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement (T)22= del(T)14 del(T)11 del(T)10 del(T)8 del(T)7 del(T)5 del(T)4 delTTT delTT delT dupT dupTT dupTTT dup(T)4 dup(T)5 dup(T)6 dup(T)7 dup(T)8 dup(T)9 dup(T)10 dup(T)18 dup(T)19 ins(T)27 ins(T)38
GRCh38.p14 chr 1 NC_000001.11:g.16457708_16457729= NC_000001.11:g.16457716_16457729del NC_000001.11:g.16457719_16457729del NC_000001.11:g.16457720_16457729del NC_000001.11:g.16457722_16457729del NC_000001.11:g.16457723_16457729del NC_000001.11:g.16457725_16457729del NC_000001.11:g.16457726_16457729del NC_000001.11:g.16457727_16457729del NC_000001.11:g.16457728_16457729del NC_000001.11:g.16457729del NC_000001.11:g.16457729dup NC_000001.11:g.16457728_16457729dup NC_000001.11:g.16457727_16457729dup NC_000001.11:g.16457726_16457729dup NC_000001.11:g.16457725_16457729dup NC_000001.11:g.16457724_16457729dup NC_000001.11:g.16457723_16457729dup NC_000001.11:g.16457722_16457729dup NC_000001.11:g.16457721_16457729dup NC_000001.11:g.16457720_16457729dup NC_000001.11:g.16457712_16457729dup NC_000001.11:g.16457711_16457729dup NC_000001.11:g.16457729_16457730insTTTTTTTTTTTTTTTTTTTTTTTTTTT NC_000001.11:g.16457729_16457730insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 1 NC_000001.10:g.16784203_16784224= NC_000001.10:g.16784211_16784224del NC_000001.10:g.16784214_16784224del NC_000001.10:g.16784215_16784224del NC_000001.10:g.16784217_16784224del NC_000001.10:g.16784218_16784224del NC_000001.10:g.16784220_16784224del NC_000001.10:g.16784221_16784224del NC_000001.10:g.16784222_16784224del NC_000001.10:g.16784223_16784224del NC_000001.10:g.16784224del NC_000001.10:g.16784224dup NC_000001.10:g.16784223_16784224dup NC_000001.10:g.16784222_16784224dup NC_000001.10:g.16784221_16784224dup NC_000001.10:g.16784220_16784224dup NC_000001.10:g.16784219_16784224dup NC_000001.10:g.16784218_16784224dup NC_000001.10:g.16784217_16784224dup NC_000001.10:g.16784216_16784224dup NC_000001.10:g.16784215_16784224dup NC_000001.10:g.16784207_16784224dup NC_000001.10:g.16784206_16784224dup NC_000001.10:g.16784224_16784225insTTTTTTTTTTTTTTTTTTTTTTTTTTT NC_000001.10:g.16784224_16784225insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 RefSeqGene NG_047165.1:g.22037_22058= NG_047165.1:g.22045_22058del NG_047165.1:g.22048_22058del NG_047165.1:g.22049_22058del NG_047165.1:g.22051_22058del NG_047165.1:g.22052_22058del NG_047165.1:g.22054_22058del NG_047165.1:g.22055_22058del NG_047165.1:g.22056_22058del NG_047165.1:g.22057_22058del NG_047165.1:g.22058del NG_047165.1:g.22058dup NG_047165.1:g.22057_22058dup NG_047165.1:g.22056_22058dup NG_047165.1:g.22055_22058dup NG_047165.1:g.22054_22058dup NG_047165.1:g.22053_22058dup NG_047165.1:g.22052_22058dup NG_047165.1:g.22051_22058dup NG_047165.1:g.22050_22058dup NG_047165.1:g.22049_22058dup NG_047165.1:g.22041_22058dup NG_047165.1:g.22040_22058dup NG_047165.1:g.22058_22059insTTTTTTTTTTTTTTTTTTTTTTTTTTT NG_047165.1:g.22058_22059insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh38.p14 chr 1 fix patch HG1343_HG173_HG459_PATCH NW_025791756.1:g.261973_261994= NW_025791756.1:g.261981_261994del NW_025791756.1:g.261984_261994del NW_025791756.1:g.261985_261994del NW_025791756.1:g.261987_261994del NW_025791756.1:g.261988_261994del NW_025791756.1:g.261990_261994del NW_025791756.1:g.261991_261994del NW_025791756.1:g.261992_261994del NW_025791756.1:g.261993_261994del NW_025791756.1:g.261994del NW_025791756.1:g.261994dup NW_025791756.1:g.261993_261994dup NW_025791756.1:g.261992_261994dup NW_025791756.1:g.261991_261994dup NW_025791756.1:g.261990_261994dup NW_025791756.1:g.261989_261994dup NW_025791756.1:g.261988_261994dup NW_025791756.1:g.261987_261994dup NW_025791756.1:g.261986_261994dup NW_025791756.1:g.261985_261994dup NW_025791756.1:g.261977_261994dup NW_025791756.1:g.261976_261994dup NW_025791756.1:g.261994_261995insTTTTTTTTTTTTTTTTTTTTTTTTTTT NW_025791756.1:g.261994_261995insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 transcript variant 2 NM_001145277.1:c.668-1134= NM_001145277.1:c.668-1126_668-1113del NM_001145277.1:c.668-1123_668-1113del NM_001145277.1:c.668-1122_668-1113del NM_001145277.1:c.668-1120_668-1113del NM_001145277.1:c.668-1119_668-1113del NM_001145277.1:c.668-1117_668-1113del NM_001145277.1:c.668-1116_668-1113del NM_001145277.1:c.668-1115_668-1113del NM_001145277.1:c.668-1114_668-1113del NM_001145277.1:c.668-1113del NM_001145277.1:c.668-1113dup NM_001145277.1:c.668-1114_668-1113dup NM_001145277.1:c.668-1115_668-1113dup NM_001145277.1:c.668-1116_668-1113dup NM_001145277.1:c.668-1117_668-1113dup NM_001145277.1:c.668-1118_668-1113dup NM_001145277.1:c.668-1119_668-1113dup NM_001145277.1:c.668-1120_668-1113dup NM_001145277.1:c.668-1121_668-1113dup NM_001145277.1:c.668-1122_668-1113dup NM_001145277.1:c.668-1130_668-1113dup NM_001145277.1:c.668-1131_668-1113dup NM_001145277.1:c.668-1113_668-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTT NM_001145277.1:c.668-1113_668-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 transcript variant 2 NM_001145277.2:c.668-1134= NM_001145277.2:c.668-1126_668-1113del NM_001145277.2:c.668-1123_668-1113del NM_001145277.2:c.668-1122_668-1113del NM_001145277.2:c.668-1120_668-1113del NM_001145277.2:c.668-1119_668-1113del NM_001145277.2:c.668-1117_668-1113del NM_001145277.2:c.668-1116_668-1113del NM_001145277.2:c.668-1115_668-1113del NM_001145277.2:c.668-1114_668-1113del NM_001145277.2:c.668-1113del NM_001145277.2:c.668-1113dup NM_001145277.2:c.668-1114_668-1113dup NM_001145277.2:c.668-1115_668-1113dup NM_001145277.2:c.668-1116_668-1113dup NM_001145277.2:c.668-1117_668-1113dup NM_001145277.2:c.668-1118_668-1113dup NM_001145277.2:c.668-1119_668-1113dup NM_001145277.2:c.668-1120_668-1113dup NM_001145277.2:c.668-1121_668-1113dup NM_001145277.2:c.668-1122_668-1113dup NM_001145277.2:c.668-1130_668-1113dup NM_001145277.2:c.668-1131_668-1113dup NM_001145277.2:c.668-1113_668-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTT NM_001145277.2:c.668-1113_668-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 transcript variant 3 NM_001145278.1:c.666-1134= NM_001145278.1:c.666-1126_666-1113del NM_001145278.1:c.666-1123_666-1113del NM_001145278.1:c.666-1122_666-1113del NM_001145278.1:c.666-1120_666-1113del NM_001145278.1:c.666-1119_666-1113del NM_001145278.1:c.666-1117_666-1113del NM_001145278.1:c.666-1116_666-1113del NM_001145278.1:c.666-1115_666-1113del NM_001145278.1:c.666-1114_666-1113del NM_001145278.1:c.666-1113del NM_001145278.1:c.666-1113dup NM_001145278.1:c.666-1114_666-1113dup NM_001145278.1:c.666-1115_666-1113dup NM_001145278.1:c.666-1116_666-1113dup NM_001145278.1:c.666-1117_666-1113dup NM_001145278.1:c.666-1118_666-1113dup NM_001145278.1:c.666-1119_666-1113dup NM_001145278.1:c.666-1120_666-1113dup NM_001145278.1:c.666-1121_666-1113dup NM_001145278.1:c.666-1122_666-1113dup NM_001145278.1:c.666-1130_666-1113dup NM_001145278.1:c.666-1131_666-1113dup NM_001145278.1:c.666-1113_666-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTT NM_001145278.1:c.666-1113_666-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 transcript variant 3 NM_001145278.2:c.666-1134= NM_001145278.2:c.666-1126_666-1113del NM_001145278.2:c.666-1123_666-1113del NM_001145278.2:c.666-1122_666-1113del NM_001145278.2:c.666-1120_666-1113del NM_001145278.2:c.666-1119_666-1113del NM_001145278.2:c.666-1117_666-1113del NM_001145278.2:c.666-1116_666-1113del NM_001145278.2:c.666-1115_666-1113del NM_001145278.2:c.666-1114_666-1113del NM_001145278.2:c.666-1113del NM_001145278.2:c.666-1113dup NM_001145278.2:c.666-1114_666-1113dup NM_001145278.2:c.666-1115_666-1113dup NM_001145278.2:c.666-1116_666-1113dup NM_001145278.2:c.666-1117_666-1113dup NM_001145278.2:c.666-1118_666-1113dup NM_001145278.2:c.666-1119_666-1113dup NM_001145278.2:c.666-1120_666-1113dup NM_001145278.2:c.666-1121_666-1113dup NM_001145278.2:c.666-1122_666-1113dup NM_001145278.2:c.666-1130_666-1113dup NM_001145278.2:c.666-1131_666-1113dup NM_001145278.2:c.666-1113_666-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTT NM_001145278.2:c.666-1113_666-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 transcript variant 1 NM_018090.4:c.744-1134= NM_018090.4:c.744-1126_744-1113del NM_018090.4:c.744-1123_744-1113del NM_018090.4:c.744-1122_744-1113del NM_018090.4:c.744-1120_744-1113del NM_018090.4:c.744-1119_744-1113del NM_018090.4:c.744-1117_744-1113del NM_018090.4:c.744-1116_744-1113del NM_018090.4:c.744-1115_744-1113del NM_018090.4:c.744-1114_744-1113del NM_018090.4:c.744-1113del NM_018090.4:c.744-1113dup NM_018090.4:c.744-1114_744-1113dup NM_018090.4:c.744-1115_744-1113dup NM_018090.4:c.744-1116_744-1113dup NM_018090.4:c.744-1117_744-1113dup NM_018090.4:c.744-1118_744-1113dup NM_018090.4:c.744-1119_744-1113dup NM_018090.4:c.744-1120_744-1113dup NM_018090.4:c.744-1121_744-1113dup NM_018090.4:c.744-1122_744-1113dup NM_018090.4:c.744-1130_744-1113dup NM_018090.4:c.744-1131_744-1113dup NM_018090.4:c.744-1113_744-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTT NM_018090.4:c.744-1113_744-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 transcript variant 1 NM_018090.5:c.744-1134= NM_018090.5:c.744-1126_744-1113del NM_018090.5:c.744-1123_744-1113del NM_018090.5:c.744-1122_744-1113del NM_018090.5:c.744-1120_744-1113del NM_018090.5:c.744-1119_744-1113del NM_018090.5:c.744-1117_744-1113del NM_018090.5:c.744-1116_744-1113del NM_018090.5:c.744-1115_744-1113del NM_018090.5:c.744-1114_744-1113del NM_018090.5:c.744-1113del NM_018090.5:c.744-1113dup NM_018090.5:c.744-1114_744-1113dup NM_018090.5:c.744-1115_744-1113dup NM_018090.5:c.744-1116_744-1113dup NM_018090.5:c.744-1117_744-1113dup NM_018090.5:c.744-1118_744-1113dup NM_018090.5:c.744-1119_744-1113dup NM_018090.5:c.744-1120_744-1113dup NM_018090.5:c.744-1121_744-1113dup NM_018090.5:c.744-1122_744-1113dup NM_018090.5:c.744-1130_744-1113dup NM_018090.5:c.744-1131_744-1113dup NM_018090.5:c.744-1113_744-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTT NM_018090.5:c.744-1113_744-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NECAP2 transcript variant X1 XM_047424713.1:c.509-1134= XM_047424713.1:c.509-1126_509-1113del XM_047424713.1:c.509-1123_509-1113del XM_047424713.1:c.509-1122_509-1113del XM_047424713.1:c.509-1120_509-1113del XM_047424713.1:c.509-1119_509-1113del XM_047424713.1:c.509-1117_509-1113del XM_047424713.1:c.509-1116_509-1113del XM_047424713.1:c.509-1115_509-1113del XM_047424713.1:c.509-1114_509-1113del XM_047424713.1:c.509-1113del XM_047424713.1:c.509-1113dup XM_047424713.1:c.509-1114_509-1113dup XM_047424713.1:c.509-1115_509-1113dup XM_047424713.1:c.509-1116_509-1113dup XM_047424713.1:c.509-1117_509-1113dup XM_047424713.1:c.509-1118_509-1113dup XM_047424713.1:c.509-1119_509-1113dup XM_047424713.1:c.509-1120_509-1113dup XM_047424713.1:c.509-1121_509-1113dup XM_047424713.1:c.509-1122_509-1113dup XM_047424713.1:c.509-1130_509-1113dup XM_047424713.1:c.509-1131_509-1113dup XM_047424713.1:c.509-1113_509-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTT XM_047424713.1:c.509-1113_509-1112insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

37 SubSNP, 29 Frequency submissions
No Submitter Submission ID Date (Build)
1 HGSV ss80071661 Dec 14, 2007 (129)
2 SWEGEN ss2986370144 Nov 08, 2017 (151)
3 PACBIO ss3789007731 Jul 12, 2019 (153)
4 PACBIO ss3793880465 Jul 12, 2019 (153)
5 EVA ss3826042874 Apr 25, 2020 (154)
6 GNOMAD ss3988989147 Apr 27, 2021 (155)
7 GNOMAD ss3988989148 Apr 27, 2021 (155)
8 GNOMAD ss3988989149 Apr 27, 2021 (155)
9 GNOMAD ss3988989150 Apr 27, 2021 (155)
10 GNOMAD ss3988989151 Apr 27, 2021 (155)
11 GNOMAD ss3988989152 Apr 27, 2021 (155)
12 GNOMAD ss3988989153 Apr 27, 2021 (155)
13 GNOMAD ss3988989154 Apr 27, 2021 (155)
14 GNOMAD ss3988989155 Apr 27, 2021 (155)
15 GNOMAD ss3988989156 Apr 27, 2021 (155)
16 GNOMAD ss3988989157 Apr 27, 2021 (155)
17 GNOMAD ss3988989158 Apr 27, 2021 (155)
18 GNOMAD ss3988989159 Apr 27, 2021 (155)
19 GNOMAD ss3988989160 Apr 27, 2021 (155)
20 GNOMAD ss3988989161 Apr 27, 2021 (155)
21 GNOMAD ss3988989162 Apr 27, 2021 (155)
22 GNOMAD ss3988989163 Apr 27, 2021 (155)
23 TOPMED ss4440474493 Apr 27, 2021 (155)
24 TOPMED ss4440474494 Apr 27, 2021 (155)
25 TOPMED ss4440474495 Apr 27, 2021 (155)
26 TOMMO_GENOMICS ss5142669043 Apr 27, 2021 (155)
27 TOMMO_GENOMICS ss5142669044 Apr 27, 2021 (155)
28 TOMMO_GENOMICS ss5142669045 Apr 27, 2021 (155)
29 1000G_HIGH_COVERAGE ss5241323506 Oct 12, 2022 (156)
30 HUGCELL_USP ss5442500674 Oct 12, 2022 (156)
31 HUGCELL_USP ss5442500675 Oct 12, 2022 (156)
32 HUGCELL_USP ss5442500676 Oct 12, 2022 (156)
33 HUGCELL_USP ss5442500677 Oct 12, 2022 (156)
34 TOMMO_GENOMICS ss5667037334 Oct 12, 2022 (156)
35 TOMMO_GENOMICS ss5667037335 Oct 12, 2022 (156)
36 TOMMO_GENOMICS ss5667037337 Oct 12, 2022 (156)
37 TOMMO_GENOMICS ss5667037338 Oct 12, 2022 (156)
38 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
39 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
40 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
41 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
42 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
43 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
44 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
45 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
46 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
47 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
48 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
49 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
50 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
51 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
52 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
53 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
54 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
55 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 3591747 (NC_000001.11:16457707::T 11579/96500)
Row 3591748 (NC_000001.11:16457707::TT 2918/96234)
Row 3591749 (NC_000001.11:16457707::TTT 348/96460)...

- Apr 27, 2021 (155)
56 8.3KJPN

Submission ignored due to conflicting rows:
Row 638350 (NC_000001.10:16784202::T 775/16744)
Row 638351 (NC_000001.10:16784202:T: 95/16744)
Row 638352 (NC_000001.10:16784202::TT 58/16744)

- Apr 27, 2021 (155)
57 8.3KJPN

Submission ignored due to conflicting rows:
Row 638350 (NC_000001.10:16784202::T 775/16744)
Row 638351 (NC_000001.10:16784202:T: 95/16744)
Row 638352 (NC_000001.10:16784202::TT 58/16744)

- Apr 27, 2021 (155)
58 8.3KJPN

Submission ignored due to conflicting rows:
Row 638350 (NC_000001.10:16784202::T 775/16744)
Row 638351 (NC_000001.10:16784202:T: 95/16744)
Row 638352 (NC_000001.10:16784202::TT 58/16744)

- Apr 27, 2021 (155)
59 14KJPN

Submission ignored due to conflicting rows:
Row 874438 (NC_000001.11:16457707:T: 182/28254)
Row 874439 (NC_000001.11:16457707::T 1426/28254)
Row 874441 (NC_000001.11:16457707::TT 97/28254)...

- Oct 12, 2022 (156)
60 14KJPN

Submission ignored due to conflicting rows:
Row 874438 (NC_000001.11:16457707:T: 182/28254)
Row 874439 (NC_000001.11:16457707::T 1426/28254)
Row 874441 (NC_000001.11:16457707::TT 97/28254)...

- Oct 12, 2022 (156)
61 14KJPN

Submission ignored due to conflicting rows:
Row 874438 (NC_000001.11:16457707:T: 182/28254)
Row 874439 (NC_000001.11:16457707::T 1426/28254)
Row 874441 (NC_000001.11:16457707::TT 97/28254)...

- Oct 12, 2022 (156)
62 14KJPN

Submission ignored due to conflicting rows:
Row 874438 (NC_000001.11:16457707:T: 182/28254)
Row 874439 (NC_000001.11:16457707::T 1426/28254)
Row 874441 (NC_000001.11:16457707::TT 97/28254)...

- Oct 12, 2022 (156)
63 TopMed

Submission ignored due to conflicting rows:
Row 4080828 (NC_000001.11:16457707:TTTTTTTTTT: 6/264690)
Row 4080829 (NC_000001.11:16457707:TTTTTTTTTTT: 2/264690)
Row 4080830 (NC_000001.11:16457707:TTTTTTTTTTTTTT: 2/264690)

- Apr 27, 2021 (155)
64 TopMed

Submission ignored due to conflicting rows:
Row 4080828 (NC_000001.11:16457707:TTTTTTTTTT: 6/264690)
Row 4080829 (NC_000001.11:16457707:TTTTTTTTTTT: 2/264690)
Row 4080830 (NC_000001.11:16457707:TTTTTTTTTTTTTT: 2/264690)

- Apr 27, 2021 (155)
65 TopMed

Submission ignored due to conflicting rows:
Row 4080828 (NC_000001.11:16457707:TTTTTTTTTT: 6/264690)
Row 4080829 (NC_000001.11:16457707:TTTTTTTTTTT: 2/264690)
Row 4080830 (NC_000001.11:16457707:TTTTTTTTTTTTTT: 2/264690)

- Apr 27, 2021 (155)
66 ALFA NC_000001.11 - 16457708 Apr 27, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss4440474495 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTT:

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTT

(self)
ss4440474494 NC_000001.11:16457707:TTTTTTTTTTT: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT

(self)
ss3988989163, ss4440474493 NC_000001.11:16457707:TTTTTTTTTT: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT

(self)
ss3988989162 NC_000001.11:16457707:TTTTT: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT

(self)
ss2986370144 NC_000001.10:16784202:TTTT: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT

(self)
ss3988989161 NC_000001.11:16457707:TTT: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT

(self)
ss3988989160, ss5442500677 NC_000001.11:16457707:TT: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

(self)
ss80071661 NC_000001.8:16529529:T: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss5142669044 NC_000001.10:16784202:T: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss5442500674, ss5667037334 NC_000001.11:16457707:T: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss3789007731, ss3793880465, ss3826042874, ss5142669043 NC_000001.10:16784202::T NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989147, ss5442500675, ss5667037335 NC_000001.11:16457707::T NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

(self)
ss5142669045 NC_000001.10:16784202::TT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989148, ss5241323506, ss5442500676, ss5667037337 NC_000001.11:16457707::TT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989149, ss5667037338 NC_000001.11:16457707::TTT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989150 NC_000001.11:16457707::TTTT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989151 NC_000001.11:16457707::TTTTT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989152 NC_000001.11:16457707::TTTTTT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989153 NC_000001.11:16457707::TTTTTTT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989154 NC_000001.11:16457707::TTTTTTTT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989155 NC_000001.11:16457707::TTTTTTTTT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989156 NC_000001.11:16457707::TTTTTTTTTT NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989157 NC_000001.11:16457707::TTTTTTTTTTT…

NC_000001.11:16457707::TTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
1699721517 NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989158 NC_000001.11:16457707::TTTTTTTTTTT…

NC_000001.11:16457707::TTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3988989159 NC_000001.11:16457707::TTTTTTTTTTT…

NC_000001.11:16457707::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
Removed from this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Destination RSIDs
ss3069607911 NC_000001.11:16457707:TTTT: NC_000001.11:16457707:TTTTTTTTTTTT…

NC_000001.11:16457707:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT

Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs56863489

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d