Name: rs55833923
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs55833923

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr10:117350269-117350284 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₉ / del(T)₅ / del(T)₄ / delT…
del(T)₉ / del(T)₅ / del(T)₄ / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₉
Variation Type: Indel Insertion and Deletion
Frequency: del(T)₉=0.0000 (0/6036, ALFA)
del(T)₄=0.0000 (0/6036, ALFA)
delTTT=0.0000 (0/6036, ALFA) (+ 4 more)
delTT=0.0000 (0/6036, ALFA)
delT=0.0000 (0/6036, ALFA)
dupT=0.0000 (0/6036, ALFA)
dupTT=0.0000 (0/6036, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PDZD8 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	HWEP
Total	Global	6036	TTTTTTTTTTTTTTTT=1.0000	TTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTT=0.0000	1.0	N/A
European	Sub	5162	TTTTTTTTTTTTTTTT=1.0000	TTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTT=0.0000	1.0	N/A
African	Sub	306	TTTTTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000	1.0	N/A
African Others	Sub	14	TTTTTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	N/A
African American	Sub	292	TTTTTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000	1.0	N/A
Asian	Sub	18	TTTTTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	N/A
East Asian	Sub	14	TTTTTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	N/A
Other Asian	Sub	4	TTTTTTTTTTTTTTTT=1.0	TTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0	1.0	N/A
Latin American 1	Sub	56	TTTTTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	N/A
Latin American 2	Sub	270	TTTTTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000	1.0	N/A
South Asian	Sub	50	TTTTTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00	1.0	N/A
Other	Sub	174	TTTTTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000	1.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	6036	(T)₁₆=1.0000	del(T)₉=0.0000, del(T)₄=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000
Allele Frequency Aggregator	European	Sub	5162	(T)₁₆=1.0000	del(T)₉=0.0000, del(T)₄=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000
Allele Frequency Aggregator	African	Sub	306	(T)₁₆=1.000	del(T)₉=0.000, del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000
Allele Frequency Aggregator	Latin American 2	Sub	270	(T)₁₆=1.000	del(T)₉=0.000, del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000
Allele Frequency Aggregator	Other	Sub	174	(T)₁₆=1.000	del(T)₉=0.000, del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000
Allele Frequency Aggregator	Latin American 1	Sub	56	(T)₁₆=1.00	del(T)₉=0.00, del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00
Allele Frequency Aggregator	South Asian	Sub	50	(T)₁₆=1.00	del(T)₉=0.00, del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00
Allele Frequency Aggregator	Asian	Sub	18	(T)₁₆=1.00	del(T)₉=0.00, del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 10	NC_000010.11:g.117350276_117350284del
GRCh38.p14 chr 10	NC_000010.11:g.117350280_117350284del
GRCh38.p14 chr 10	NC_000010.11:g.117350281_117350284del
GRCh38.p14 chr 10	NC_000010.11:g.117350282_117350284del
GRCh38.p14 chr 10	NC_000010.11:g.117350283_117350284del
GRCh38.p14 chr 10	NC_000010.11:g.117350284del
GRCh38.p14 chr 10	NC_000010.11:g.117350284dup
GRCh38.p14 chr 10	NC_000010.11:g.117350283_117350284dup
GRCh38.p14 chr 10	NC_000010.11:g.117350282_117350284dup
GRCh38.p14 chr 10	NC_000010.11:g.117350276_117350284dup
GRCh37.p13 chr 10	NC_000010.10:g.119109787_119109795del
GRCh37.p13 chr 10	NC_000010.10:g.119109791_119109795del
GRCh37.p13 chr 10	NC_000010.10:g.119109792_119109795del
GRCh37.p13 chr 10	NC_000010.10:g.119109793_119109795del
GRCh37.p13 chr 10	NC_000010.10:g.119109794_119109795del
GRCh37.p13 chr 10	NC_000010.10:g.119109795del
GRCh37.p13 chr 10	NC_000010.10:g.119109795dup
GRCh37.p13 chr 10	NC_000010.10:g.119109794_119109795dup
GRCh37.p13 chr 10	NC_000010.10:g.119109793_119109795dup
GRCh37.p13 chr 10	NC_000010.10:g.119109787_119109795dup

Gene: PDZD8, PDZ domain containing 8 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PDZD8 transcript	NM_173791.5:c.873-9175_87… NM_173791.5:c.873-9175_873-9167del	N/A	Intron Variant
PDZD8 transcript variant X1	XM_005269518.5:c.872+2407… XM_005269518.5:c.872+24079_872+24087del	N/A	Intron Variant
PDZD8 transcript variant X4	XM_011539265.3:c.873-9175… XM_011539265.3:c.873-9175_873-9167del	N/A	Intron Variant
PDZD8 transcript variant X5	XM_011539266.4:c.873-9175… XM_011539266.4:c.873-9175_873-9167del	N/A	Intron Variant
PDZD8 transcript variant X2	XM_047424575.1:c.873-9175… XM_047424575.1:c.873-9175_873-9167del	N/A	Intron Variant
PDZD8 transcript variant X7	XM_047424576.1:c.873-9175… XM_047424576.1:c.873-9175_873-9167del	N/A	Intron Variant
PDZD8 transcript variant X6	XR_007061943.1:n.	N/A	Intron Variant
PDZD8 transcript variant X3	XR_945602.3:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₆=	del(T)₉	del(T)₅	del(T)₄	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₉
GRCh38.p14 chr 10	NC_000010.11:g.117350269_117350284=	NC_000010.11:g.117350276_117350284del	NC_000010.11:g.117350280_117350284del	NC_000010.11:g.117350281_117350284del	NC_000010.11:g.117350282_117350284del	NC_000010.11:g.117350283_117350284del	NC_000010.11:g.117350284del	NC_000010.11:g.117350284dup	NC_000010.11:g.117350283_117350284dup	NC_000010.11:g.117350282_117350284dup	NC_000010.11:g.117350276_117350284dup
GRCh37.p13 chr 10	NC_000010.10:g.119109780_119109795=	NC_000010.10:g.119109787_119109795del	NC_000010.10:g.119109791_119109795del	NC_000010.10:g.119109792_119109795del	NC_000010.10:g.119109793_119109795del	NC_000010.10:g.119109794_119109795del	NC_000010.10:g.119109795del	NC_000010.10:g.119109795dup	NC_000010.10:g.119109794_119109795dup	NC_000010.10:g.119109793_119109795dup	NC_000010.10:g.119109787_119109795dup
PDZD8 transcript	NM_173791.3:c.873-9167=	NM_173791.3:c.873-9175_873-9167del	NM_173791.3:c.873-9171_873-9167del	NM_173791.3:c.873-9170_873-9167del	NM_173791.3:c.873-9169_873-9167del	NM_173791.3:c.873-9168_873-9167del	NM_173791.3:c.873-9167del	NM_173791.3:c.873-9167dup	NM_173791.3:c.873-9168_873-9167dup	NM_173791.3:c.873-9169_873-9167dup	NM_173791.3:c.873-9175_873-9167dup
PDZD8 transcript	NM_173791.5:c.873-9167=	NM_173791.5:c.873-9175_873-9167del	NM_173791.5:c.873-9171_873-9167del	NM_173791.5:c.873-9170_873-9167del	NM_173791.5:c.873-9169_873-9167del	NM_173791.5:c.873-9168_873-9167del	NM_173791.5:c.873-9167del	NM_173791.5:c.873-9167dup	NM_173791.5:c.873-9168_873-9167dup	NM_173791.5:c.873-9169_873-9167dup	NM_173791.5:c.873-9175_873-9167dup
PDZD8 transcript variant X1	XM_005269518.1:c.872+24087=	XM_005269518.1:c.872+24079_872+24087del	XM_005269518.1:c.872+24083_872+24087del	XM_005269518.1:c.872+24084_872+24087del	XM_005269518.1:c.872+24085_872+24087del	XM_005269518.1:c.872+24086_872+24087del	XM_005269518.1:c.872+24087del	XM_005269518.1:c.872+24087dup	XM_005269518.1:c.872+24086_872+24087dup	XM_005269518.1:c.872+24085_872+24087dup	XM_005269518.1:c.872+24079_872+24087dup
PDZD8 transcript variant X1	XM_005269518.5:c.872+24087=	XM_005269518.5:c.872+24079_872+24087del	XM_005269518.5:c.872+24083_872+24087del	XM_005269518.5:c.872+24084_872+24087del	XM_005269518.5:c.872+24085_872+24087del	XM_005269518.5:c.872+24086_872+24087del	XM_005269518.5:c.872+24087del	XM_005269518.5:c.872+24087dup	XM_005269518.5:c.872+24086_872+24087dup	XM_005269518.5:c.872+24085_872+24087dup	XM_005269518.5:c.872+24079_872+24087dup
PDZD8 transcript variant X4	XM_011539265.3:c.873-9167=	XM_011539265.3:c.873-9175_873-9167del	XM_011539265.3:c.873-9171_873-9167del	XM_011539265.3:c.873-9170_873-9167del	XM_011539265.3:c.873-9169_873-9167del	XM_011539265.3:c.873-9168_873-9167del	XM_011539265.3:c.873-9167del	XM_011539265.3:c.873-9167dup	XM_011539265.3:c.873-9168_873-9167dup	XM_011539265.3:c.873-9169_873-9167dup	XM_011539265.3:c.873-9175_873-9167dup
PDZD8 transcript variant X5	XM_011539266.4:c.873-9167=	XM_011539266.4:c.873-9175_873-9167del	XM_011539266.4:c.873-9171_873-9167del	XM_011539266.4:c.873-9170_873-9167del	XM_011539266.4:c.873-9169_873-9167del	XM_011539266.4:c.873-9168_873-9167del	XM_011539266.4:c.873-9167del	XM_011539266.4:c.873-9167dup	XM_011539266.4:c.873-9168_873-9167dup	XM_011539266.4:c.873-9169_873-9167dup	XM_011539266.4:c.873-9175_873-9167dup
PDZD8 transcript variant X2	XM_047424575.1:c.873-9167=	XM_047424575.1:c.873-9175_873-9167del	XM_047424575.1:c.873-9171_873-9167del	XM_047424575.1:c.873-9170_873-9167del	XM_047424575.1:c.873-9169_873-9167del	XM_047424575.1:c.873-9168_873-9167del	XM_047424575.1:c.873-9167del	XM_047424575.1:c.873-9167dup	XM_047424575.1:c.873-9168_873-9167dup	XM_047424575.1:c.873-9169_873-9167dup	XM_047424575.1:c.873-9175_873-9167dup
PDZD8 transcript variant X7	XM_047424576.1:c.873-9167=	XM_047424576.1:c.873-9175_873-9167del	XM_047424576.1:c.873-9171_873-9167del	XM_047424576.1:c.873-9170_873-9167del	XM_047424576.1:c.873-9169_873-9167del	XM_047424576.1:c.873-9168_873-9167del	XM_047424576.1:c.873-9167del	XM_047424576.1:c.873-9167dup	XM_047424576.1:c.873-9168_873-9167dup	XM_047424576.1:c.873-9169_873-9167dup	XM_047424576.1:c.873-9175_873-9167dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

54 SubSNP, 29 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss77964648	Dec 06, 2007 (129)
2	BCMHGSC_JDW	ss103516751	Mar 15, 2016 (147)
3	BUSHMAN	ss193207149	Apr 25, 2013 (138)
4	GMI	ss289040307	May 04, 2012 (137)
5	SSMP	ss663956074	Apr 01, 2015 (144)
6	EVA_UK10K_ALSPAC	ss1706918416	Apr 01, 2015 (144)
7	EVA_UK10K_TWINSUK	ss1706918423	Apr 01, 2015 (144)
8	EVA_UK10K_TWINSUK	ss1710490737	Apr 01, 2015 (144)
9	EVA_UK10K_ALSPAC	ss1710490765	Apr 01, 2015 (144)
10	SWEGEN	ss3007223900	Nov 08, 2017 (151)
11	MCHAISSO	ss3065405290	Nov 08, 2017 (151)
12	EVA_DECODE	ss3690775143	Jul 13, 2019 (153)
13	EVA_DECODE	ss3690775144	Jul 13, 2019 (153)
14	EVA_DECODE	ss3690775145	Jul 13, 2019 (153)
15	EVA_DECODE	ss3690775146	Jul 13, 2019 (153)
16	EVA_DECODE	ss3690775147	Jul 13, 2019 (153)
17	EVA_DECODE	ss3690775148	Jul 13, 2019 (153)
18	ACPOP	ss3737719063	Jul 13, 2019 (153)
19	ACPOP	ss3737719064	Jul 13, 2019 (153)
20	ACPOP	ss3737719066	Jul 13, 2019 (153)
21	PACBIO	ss3786799672	Jul 13, 2019 (153)
22	PACBIO	ss3791959950	Jul 13, 2019 (153)
23	PACBIO	ss3796842088	Jul 13, 2019 (153)
24	EVA	ss3832355757	Apr 26, 2020 (154)
25	KOGIC	ss3968768181	Apr 26, 2020 (154)
26	KOGIC	ss3968768182	Apr 26, 2020 (154)
27	KOGIC	ss3968768183	Apr 26, 2020 (154)
28	KOGIC	ss3968768184	Apr 26, 2020 (154)
29	KOGIC	ss3968768185	Apr 26, 2020 (154)
30	GNOMAD	ss4226524694	Apr 26, 2021 (155)
31	GNOMAD	ss4226524695	Apr 26, 2021 (155)
32	GNOMAD	ss4226524696	Apr 26, 2021 (155)
33	GNOMAD	ss4226524697	Apr 26, 2021 (155)
34	GNOMAD	ss4226524698	Apr 26, 2021 (155)
35	GNOMAD	ss4226524699	Apr 26, 2021 (155)
36	GNOMAD	ss4226524700	Apr 26, 2021 (155)
37	GNOMAD	ss4226524701	Apr 26, 2021 (155)
38	TOMMO_GENOMICS	ss5199689714	Apr 26, 2021 (155)
39	TOMMO_GENOMICS	ss5199689715	Apr 26, 2021 (155)
40	TOMMO_GENOMICS	ss5199689716	Apr 26, 2021 (155)
41	TOMMO_GENOMICS	ss5199689717	Apr 26, 2021 (155)
42	1000G_HIGH_COVERAGE	ss5285635730	Oct 16, 2022 (156)
43	1000G_HIGH_COVERAGE	ss5285635731	Oct 16, 2022 (156)
44	1000G_HIGH_COVERAGE	ss5285635732	Oct 16, 2022 (156)
45	1000G_HIGH_COVERAGE	ss5285635733	Oct 16, 2022 (156)
46	HUGCELL_USP	ss5481042161	Oct 16, 2022 (156)
47	HUGCELL_USP	ss5481042162	Oct 16, 2022 (156)
48	HUGCELL_USP	ss5481042163	Oct 16, 2022 (156)
49	HUGCELL_USP	ss5481042164	Oct 16, 2022 (156)
50	TOMMO_GENOMICS	ss5746122514	Oct 16, 2022 (156)
51	TOMMO_GENOMICS	ss5746122515	Oct 16, 2022 (156)
52	TOMMO_GENOMICS	ss5746122516	Oct 16, 2022 (156)
53	TOMMO_GENOMICS	ss5746122517	Oct 16, 2022 (156)
54	EVA	ss5980641576	Oct 16, 2022 (156)
55	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 28722275 (NC_000010.10:119109780:T: 928/3854) Row 28722276 (NC_000010.10:119109779:TTT: 653/3854)	-	Oct 12, 2018 (152)
56	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 28722275 (NC_000010.10:119109780:T: 928/3854) Row 28722276 (NC_000010.10:119109779:TTT: 653/3854)	-	Oct 12, 2018 (152)
57	gnomAD - Genomes Submission ignored due to conflicting rows: Row 365374964 (NC_000010.11:117350268::T 3153/126776) Row 365374965 (NC_000010.11:117350268::TT 10/126828) Row 365374966 (NC_000010.11:117350268::TTT 1/126834)...	-	Apr 26, 2021 (155)
58	gnomAD - Genomes Submission ignored due to conflicting rows: Row 365374964 (NC_000010.11:117350268::T 3153/126776) Row 365374965 (NC_000010.11:117350268::TT 10/126828) Row 365374966 (NC_000010.11:117350268::TTT 1/126834)...	-	Apr 26, 2021 (155)
59	gnomAD - Genomes Submission ignored due to conflicting rows: Row 365374964 (NC_000010.11:117350268::T 3153/126776) Row 365374965 (NC_000010.11:117350268::TT 10/126828) Row 365374966 (NC_000010.11:117350268::TTT 1/126834)...	-	Apr 26, 2021 (155)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 365374964 (NC_000010.11:117350268::T 3153/126776) Row 365374965 (NC_000010.11:117350268::TT 10/126828) Row 365374966 (NC_000010.11:117350268::TTT 1/126834)...	-	Apr 26, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 365374964 (NC_000010.11:117350268::T 3153/126776) Row 365374965 (NC_000010.11:117350268::TT 10/126828) Row 365374966 (NC_000010.11:117350268::TTT 1/126834)...	-	Apr 26, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 365374964 (NC_000010.11:117350268::T 3153/126776) Row 365374965 (NC_000010.11:117350268::TT 10/126828) Row 365374966 (NC_000010.11:117350268::TTT 1/126834)...	-	Apr 26, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 365374964 (NC_000010.11:117350268::T 3153/126776) Row 365374965 (NC_000010.11:117350268::TT 10/126828) Row 365374966 (NC_000010.11:117350268::TTT 1/126834)...	-	Apr 26, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 365374964 (NC_000010.11:117350268::T 3153/126776) Row 365374965 (NC_000010.11:117350268::TT 10/126828) Row 365374966 (NC_000010.11:117350268::TTT 1/126834)...	-	Apr 26, 2021 (155)
65	Korean Genome Project Submission ignored due to conflicting rows: Row 25146182 (NC_000010.11:117350268:TTT: 749/1828) Row 25146183 (NC_000010.11:117350269:TT: 48/1828) Row 25146184 (NC_000010.11:117350271::T 306/1828)...	-	Apr 26, 2020 (154)
66	Korean Genome Project Submission ignored due to conflicting rows: Row 25146182 (NC_000010.11:117350268:TTT: 749/1828) Row 25146183 (NC_000010.11:117350269:TT: 48/1828) Row 25146184 (NC_000010.11:117350271::T 306/1828)...	-	Apr 26, 2020 (154)
67	Korean Genome Project Submission ignored due to conflicting rows: Row 25146182 (NC_000010.11:117350268:TTT: 749/1828) Row 25146183 (NC_000010.11:117350269:TT: 48/1828) Row 25146184 (NC_000010.11:117350271::T 306/1828)...	-	Apr 26, 2020 (154)
68	Korean Genome Project Submission ignored due to conflicting rows: Row 25146182 (NC_000010.11:117350268:TTT: 749/1828) Row 25146183 (NC_000010.11:117350269:TT: 48/1828) Row 25146184 (NC_000010.11:117350271::T 306/1828)...	-	Apr 26, 2020 (154)
69	Korean Genome Project Submission ignored due to conflicting rows: Row 25146182 (NC_000010.11:117350268:TTT: 749/1828) Row 25146183 (NC_000010.11:117350269:TT: 48/1828) Row 25146184 (NC_000010.11:117350271::T 306/1828)...	-	Apr 26, 2020 (154)
70	Northern Sweden Submission ignored due to conflicting rows: Row 11003928 (NC_000010.10:119109779:TTT: 69/596) Row 11003929 (NC_000010.10:119109779:TT: 128/596) Row 11003931 (NC_000010.10:119109779::T 11/596)	-	Jul 13, 2019 (153)
71	Northern Sweden Submission ignored due to conflicting rows: Row 11003928 (NC_000010.10:119109779:TTT: 69/596) Row 11003929 (NC_000010.10:119109779:TT: 128/596) Row 11003931 (NC_000010.10:119109779::T 11/596)	-	Jul 13, 2019 (153)
72	Northern Sweden Submission ignored due to conflicting rows: Row 11003928 (NC_000010.10:119109779:TTT: 69/596) Row 11003929 (NC_000010.10:119109779:TT: 128/596) Row 11003931 (NC_000010.10:119109779::T 11/596)	-	Jul 13, 2019 (153)
73	8.3KJPN Submission ignored due to conflicting rows: Row 57659021 (NC_000010.10:119109779:TTT: 6926/16732) Row 57659022 (NC_000010.10:119109779:TT: 380/16732) Row 57659023 (NC_000010.10:119109779::T 2102/16732)...	-	Apr 26, 2021 (155)
74	8.3KJPN Submission ignored due to conflicting rows: Row 57659021 (NC_000010.10:119109779:TTT: 6926/16732) Row 57659022 (NC_000010.10:119109779:TT: 380/16732) Row 57659023 (NC_000010.10:119109779::T 2102/16732)...	-	Apr 26, 2021 (155)
75	8.3KJPN Submission ignored due to conflicting rows: Row 57659021 (NC_000010.10:119109779:TTT: 6926/16732) Row 57659022 (NC_000010.10:119109779:TT: 380/16732) Row 57659023 (NC_000010.10:119109779::T 2102/16732)...	-	Apr 26, 2021 (155)
76	8.3KJPN Submission ignored due to conflicting rows: Row 57659021 (NC_000010.10:119109779:TTT: 6926/16732) Row 57659022 (NC_000010.10:119109779:TT: 380/16732) Row 57659023 (NC_000010.10:119109779::T 2102/16732)...	-	Apr 26, 2021 (155)
77	14KJPN Submission ignored due to conflicting rows: Row 79959618 (NC_000010.11:117350268:TTT: 11737/28248) Row 79959619 (NC_000010.11:117350268:TT: 651/28248) Row 79959620 (NC_000010.11:117350268::T 3697/28248)...	-	Oct 16, 2022 (156)
78	14KJPN Submission ignored due to conflicting rows: Row 79959618 (NC_000010.11:117350268:TTT: 11737/28248) Row 79959619 (NC_000010.11:117350268:TT: 651/28248) Row 79959620 (NC_000010.11:117350268::T 3697/28248)...	-	Oct 16, 2022 (156)
79	14KJPN Submission ignored due to conflicting rows: Row 79959618 (NC_000010.11:117350268:TTT: 11737/28248) Row 79959619 (NC_000010.11:117350268:TT: 651/28248) Row 79959620 (NC_000010.11:117350268::T 3697/28248)...	-	Oct 16, 2022 (156)
80	14KJPN Submission ignored due to conflicting rows: Row 79959618 (NC_000010.11:117350268:TTT: 11737/28248) Row 79959619 (NC_000010.11:117350268:TT: 651/28248) Row 79959620 (NC_000010.11:117350268::T 3697/28248)...	-	Oct 16, 2022 (156)
81	UK 10K study - Twins Submission ignored due to conflicting rows: Row 28722275 (NC_000010.10:119109780:T: 852/3708) Row 28722276 (NC_000010.10:119109779:TTT: 583/3708)	-	Oct 12, 2018 (152)
82	UK 10K study - Twins Submission ignored due to conflicting rows: Row 28722275 (NC_000010.10:119109780:T: 852/3708) Row 28722276 (NC_000010.10:119109779:TTT: 583/3708)	-	Oct 12, 2018 (152)
83	ALFA	NC_000010.11 - 117350269	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
7910292260	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTT	(self)
ss4226524701	NC_000010.11:117350268:TTTTT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss5199689717	NC_000010.10:119109779:TTTT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3690775143, ss4226524700, ss5746122517	NC_000010.11:117350268:TTTT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
7910292260	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss289040307	NC_000010.9:119099769:TTT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss663956074, ss1706918416, ss1706918423, ss3007223900, ss3737719063, ss5199689714, ss5980641576	NC_000010.10:119109779:TTT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3065405290, ss3968768181, ss4226524699, ss5285635730, ss5481042162, ss5746122514	NC_000010.11:117350268:TTT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
7910292260	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3690775144	NC_000010.11:117350269:TTT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss193207149	NT_030059.14:75656747:TTT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss77964648	NC_000010.8:119099783:TT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3737719064, ss3786799672, ss3791959950, ss3796842088, ss3832355757, ss5199689715	NC_000010.10:119109779:TT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss1710490737, ss1710490765	NC_000010.10:119109780:TT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4226524698, ss5285635731, ss5481042161, ss5746122515	NC_000010.11:117350268:TT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
7910292260	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3968768182	NC_000010.11:117350269:TT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3690775145	NC_000010.11:117350270:TT:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
	NC_000010.10:119109780:T:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4226524697, ss5481042163	NC_000010.11:117350268:T:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
7910292260	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3968768184	NC_000010.11:117350270:T:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3690775146	NC_000010.11:117350271:T:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss103516751	NT_030059.13:69914258:T:	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3737719066, ss5199689716	NC_000010.10:119109779::T	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss4226524694, ss5285635732, ss5481042164, ss5746122516	NC_000010.11:117350268::T	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
7910292260	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss3968768183	NC_000010.11:117350271::T	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss3690775147	NC_000010.11:117350272::T	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss103516751	NT_030059.13:69914258:T:TT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss4226524695, ss5285635733	NC_000010.11:117350268::TT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
7910292260	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss3968768185	NC_000010.11:117350271::TT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss4226524696	NC_000010.11:117350268::TTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss3690775148	NC_000010.11:117350272::TTTTTTTTT	NC_000010.11:117350268:TTTTTTTTTTT… NC_000010.11:117350268:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs55833923

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs55833923