Name: rs397857898
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs397857898

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr17:63769962-63769978 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₉ / del(T)₆ / del(T)₅ / del(…
del(T)₉ / del(T)₆ / del(T)₅ / del(T)₄ / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₄ / dup(T)₅ / dup(T)₈
Variation Type: Indel Insertion and Deletion
Frequency: dupT=0.1708 (1008/5900, ALFA)
(T)₁₇=0.4914 (2461/5008, 1000G)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: CCDC47 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	5900	TTTTTTTTTTTTTTTTT=0.7092	TTTTTTTT=0.0005, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.1166, TTTTTTTTTTTTTTTTTT=0.1708, TTTTTTTTTTTTTTTTTTTTTT=0.0029, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0000	0.752586	0.09569	0.151724	32
European	Sub	5686	TTTTTTTTTTTTTTTTT=0.6994	TTTTTTTT=0.0005, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.1205, TTTTTTTTTTTTTTTTTT=0.1766, TTTTTTTTTTTTTTTTTTTTTT=0.0030, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0000	0.741426	0.099729	0.158845	32
African	Sub	16	TTTTTTTTTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African Others	Sub	0	TTTTTTTTTTTTTTTTT=0	TTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTT=0	0	0	0	N/A
African American	Sub	16	TTTTTTTTTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Asian	Sub	10	TTTTTTTTTTTTTTTTT=1.0	TTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
East Asian	Sub	10	TTTTTTTTTTTTTTTTT=1.0	TTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Other Asian	Sub	0	TTTTTTTTTTTTTTTTT=0	TTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTT=0	0	0	0	N/A
Latin American 1	Sub	22	TTTTTTTTTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	92	TTTTTTTTTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
South Asian	Sub	6	TTTTTTTTTTTTTTTTT=1.0	TTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Other	Sub	68	TTTTTTTTTTTTTTTTT=0.90	TTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.04, TTTTTTTTTTTTTTTTTT=0.06, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00	0.967742	0.032258	0.0	17

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	5900	(T)₁₇=0.7092	del(T)₉=0.0005, delTT=0.0000, delT=0.1166, dupT=0.1708, dupTT=0.0000, dupTTT=0.0000, dup(T)₅=0.0029
Allele Frequency Aggregator	European	Sub	5686	(T)₁₇=0.6994	del(T)₉=0.0005, delTT=0.0000, delT=0.1205, dupT=0.1766, dupTT=0.0000, dupTTT=0.0000, dup(T)₅=0.0030
Allele Frequency Aggregator	Latin American 2	Sub	92	(T)₁₇=1.00	del(T)₉=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	Other	Sub	68	(T)₁₇=0.90	del(T)₉=0.00, delTT=0.00, delT=0.04, dupT=0.06, dupTT=0.00, dupTTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	Latin American 1	Sub	22	(T)₁₇=1.00	del(T)₉=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	African	Sub	16	(T)₁₇=1.00	del(T)₉=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	Asian	Sub	10	(T)₁₇=1.0	del(T)₉=0.0, delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dupTTT=0.0, dup(T)₅=0.0
Allele Frequency Aggregator	South Asian	Sub	6	(T)₁₇=1.0	del(T)₉=0.0, delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dupTTT=0.0, dup(T)₅=0.0
1000Genomes	Global	Study-wide	5008	(T)₁₇=0.4914	delT=0.5086
1000Genomes	African	Sub	1322	(T)₁₇=0.1604	delT=0.8396
1000Genomes	East Asian	Sub	1008	(T)₁₇=0.7550	delT=0.2450
1000Genomes	Europe	Sub	1006	(T)₁₇=0.5596	delT=0.4404
1000Genomes	South Asian	Sub	978	(T)₁₇=0.555	delT=0.445
1000Genomes	American	Sub	694	(T)₁₇=0.550	delT=0.450

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 17	NC_000017.11:g.63769970_63769978del
GRCh38.p14 chr 17	NC_000017.11:g.63769973_63769978del
GRCh38.p14 chr 17	NC_000017.11:g.63769974_63769978del
GRCh38.p14 chr 17	NC_000017.11:g.63769975_63769978del
GRCh38.p14 chr 17	NC_000017.11:g.63769976_63769978del
GRCh38.p14 chr 17	NC_000017.11:g.63769977_63769978del
GRCh38.p14 chr 17	NC_000017.11:g.63769978del
GRCh38.p14 chr 17	NC_000017.11:g.63769978dup
GRCh38.p14 chr 17	NC_000017.11:g.63769977_63769978dup
GRCh38.p14 chr 17	NC_000017.11:g.63769976_63769978dup
GRCh38.p14 chr 17	NC_000017.11:g.63769975_63769978dup
GRCh38.p14 chr 17	NC_000017.11:g.63769974_63769978dup
GRCh38.p14 chr 17	NC_000017.11:g.63769971_63769978dup
GRCh37.p13 chr 17	NC_000017.10:g.61847330_61847338del
GRCh37.p13 chr 17	NC_000017.10:g.61847333_61847338del
GRCh37.p13 chr 17	NC_000017.10:g.61847334_61847338del
GRCh37.p13 chr 17	NC_000017.10:g.61847335_61847338del
GRCh37.p13 chr 17	NC_000017.10:g.61847336_61847338del
GRCh37.p13 chr 17	NC_000017.10:g.61847337_61847338del
GRCh37.p13 chr 17	NC_000017.10:g.61847338del
GRCh37.p13 chr 17	NC_000017.10:g.61847338dup
GRCh37.p13 chr 17	NC_000017.10:g.61847337_61847338dup
GRCh37.p13 chr 17	NC_000017.10:g.61847336_61847338dup
GRCh37.p13 chr 17	NC_000017.10:g.61847335_61847338dup
GRCh37.p13 chr 17	NC_000017.10:g.61847334_61847338dup
GRCh37.p13 chr 17	NC_000017.10:g.61847331_61847338dup

Gene: CCDC47, coiled-coil domain containing 47 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
CCDC47 transcript	NM_020198.3:c.-20+3442_-2… NM_020198.3:c.-20+3442_-20+3450del	N/A	Intron Variant
CCDC47 transcript variant X1	XM_005257527.3:c.-20+2807… XM_005257527.3:c.-20+2807_-20+2815del	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₇=	del(T)₉	del(T)₆	del(T)₅	del(T)₄	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₄	dup(T)₅	dup(T)₈
GRCh38.p14 chr 17	NC_000017.11:g.63769962_63769978=	NC_000017.11:g.63769970_63769978del	NC_000017.11:g.63769973_63769978del	NC_000017.11:g.63769974_63769978del	NC_000017.11:g.63769975_63769978del	NC_000017.11:g.63769976_63769978del	NC_000017.11:g.63769977_63769978del	NC_000017.11:g.63769978del	NC_000017.11:g.63769978dup	NC_000017.11:g.63769977_63769978dup	NC_000017.11:g.63769976_63769978dup	NC_000017.11:g.63769975_63769978dup	NC_000017.11:g.63769974_63769978dup	NC_000017.11:g.63769971_63769978dup
GRCh37.p13 chr 17	NC_000017.10:g.61847322_61847338=	NC_000017.10:g.61847330_61847338del	NC_000017.10:g.61847333_61847338del	NC_000017.10:g.61847334_61847338del	NC_000017.10:g.61847335_61847338del	NC_000017.10:g.61847336_61847338del	NC_000017.10:g.61847337_61847338del	NC_000017.10:g.61847338del	NC_000017.10:g.61847338dup	NC_000017.10:g.61847337_61847338dup	NC_000017.10:g.61847336_61847338dup	NC_000017.10:g.61847335_61847338dup	NC_000017.10:g.61847334_61847338dup	NC_000017.10:g.61847331_61847338dup
CCDC47 transcript	NM_020198.2:c.-20+3450=	NM_020198.2:c.-20+3442_-20+3450del	NM_020198.2:c.-20+3445_-20+3450del	NM_020198.2:c.-20+3446_-20+3450del	NM_020198.2:c.-20+3447_-20+3450del	NM_020198.2:c.-20+3448_-20+3450del	NM_020198.2:c.-20+3449_-20+3450del	NM_020198.2:c.-20+3450del	NM_020198.2:c.-20+3450dup	NM_020198.2:c.-20+3449_-20+3450dup	NM_020198.2:c.-20+3448_-20+3450dup	NM_020198.2:c.-20+3447_-20+3450dup	NM_020198.2:c.-20+3446_-20+3450dup	NM_020198.2:c.-20+3443_-20+3450dup
CCDC47 transcript	NM_020198.3:c.-20+3450=	NM_020198.3:c.-20+3442_-20+3450del	NM_020198.3:c.-20+3445_-20+3450del	NM_020198.3:c.-20+3446_-20+3450del	NM_020198.3:c.-20+3447_-20+3450del	NM_020198.3:c.-20+3448_-20+3450del	NM_020198.3:c.-20+3449_-20+3450del	NM_020198.3:c.-20+3450del	NM_020198.3:c.-20+3450dup	NM_020198.3:c.-20+3449_-20+3450dup	NM_020198.3:c.-20+3448_-20+3450dup	NM_020198.3:c.-20+3447_-20+3450dup	NM_020198.3:c.-20+3446_-20+3450dup	NM_020198.3:c.-20+3443_-20+3450dup
CCDC47 transcript variant X1	XM_005257527.1:c.-20+2815=	XM_005257527.1:c.-20+2807_-20+2815del	XM_005257527.1:c.-20+2810_-20+2815del	XM_005257527.1:c.-20+2811_-20+2815del	XM_005257527.1:c.-20+2812_-20+2815del	XM_005257527.1:c.-20+2813_-20+2815del	XM_005257527.1:c.-20+2814_-20+2815del	XM_005257527.1:c.-20+2815del	XM_005257527.1:c.-20+2815dup	XM_005257527.1:c.-20+2814_-20+2815dup	XM_005257527.1:c.-20+2813_-20+2815dup	XM_005257527.1:c.-20+2812_-20+2815dup	XM_005257527.1:c.-20+2811_-20+2815dup	XM_005257527.1:c.-20+2808_-20+2815dup
CCDC47 transcript variant X1	XM_005257527.3:c.-20+2815=	XM_005257527.3:c.-20+2807_-20+2815del	XM_005257527.3:c.-20+2810_-20+2815del	XM_005257527.3:c.-20+2811_-20+2815del	XM_005257527.3:c.-20+2812_-20+2815del	XM_005257527.3:c.-20+2813_-20+2815del	XM_005257527.3:c.-20+2814_-20+2815del	XM_005257527.3:c.-20+2815del	XM_005257527.3:c.-20+2815dup	XM_005257527.3:c.-20+2814_-20+2815dup	XM_005257527.3:c.-20+2813_-20+2815dup	XM_005257527.3:c.-20+2812_-20+2815dup	XM_005257527.3:c.-20+2811_-20+2815dup	XM_005257527.3:c.-20+2808_-20+2815dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

40 SubSNP, 22 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	ABI	ss40850634	Dec 03, 2013 (138)
2	SSIP	ss947372675	Aug 21, 2014 (142)
3	1000GENOMES	ss1376820259	Aug 21, 2014 (142)
4	SWEGEN	ss3015767753	Nov 08, 2017 (151)
5	EVA_DECODE	ss3700746707	Jul 13, 2019 (153)
6	EVA_DECODE	ss3700746708	Jul 13, 2019 (153)
7	EVA_DECODE	ss3700746709	Jul 13, 2019 (153)
8	EVA_DECODE	ss3700746710	Jul 13, 2019 (153)
9	EVA_DECODE	ss3700746711	Jul 13, 2019 (153)
10	EVA_DECODE	ss3700746712	Jul 13, 2019 (153)
11	PACBIO	ss3798078999	Jul 13, 2019 (153)
12	KHV_HUMAN_GENOMES	ss3820096633	Jul 13, 2019 (153)
13	EVA	ss3834935352	Apr 27, 2020 (154)
14	GNOMAD	ss4314159965	Apr 26, 2021 (155)
15	GNOMAD	ss4314159966	Apr 26, 2021 (155)
16	GNOMAD	ss4314159967	Apr 26, 2021 (155)
17	GNOMAD	ss4314159968	Apr 26, 2021 (155)
18	GNOMAD	ss4314159969	Apr 26, 2021 (155)
19	GNOMAD	ss4314159971	Apr 26, 2021 (155)
20	GNOMAD	ss4314159972	Apr 26, 2021 (155)
21	GNOMAD	ss4314159973	Apr 26, 2021 (155)
22	GNOMAD	ss4314159974	Apr 26, 2021 (155)
23	GNOMAD	ss4314159975	Apr 26, 2021 (155)
24	GNOMAD	ss4314159976	Apr 26, 2021 (155)
25	TOMMO_GENOMICS	ss5223091656	Apr 26, 2021 (155)
26	TOMMO_GENOMICS	ss5223091657	Apr 26, 2021 (155)
27	TOMMO_GENOMICS	ss5223091658	Apr 26, 2021 (155)
28	TOMMO_GENOMICS	ss5223091659	Apr 26, 2021 (155)
29	1000G_HIGH_COVERAGE	ss5303635408	Oct 16, 2022 (156)
30	1000G_HIGH_COVERAGE	ss5303635409	Oct 16, 2022 (156)
31	1000G_HIGH_COVERAGE	ss5303635410	Oct 16, 2022 (156)
32	HUGCELL_USP	ss5496628543	Oct 16, 2022 (156)
33	HUGCELL_USP	ss5496628544	Oct 16, 2022 (156)
34	HUGCELL_USP	ss5496628545	Oct 16, 2022 (156)
35	HUGCELL_USP	ss5496628546	Oct 16, 2022 (156)
36	TOMMO_GENOMICS	ss5779512128	Oct 16, 2022 (156)
37	TOMMO_GENOMICS	ss5779512129	Oct 16, 2022 (156)
38	TOMMO_GENOMICS	ss5779512131	Oct 16, 2022 (156)
39	TOMMO_GENOMICS	ss5779512132	Oct 16, 2022 (156)
40	EVA	ss5851860292	Oct 16, 2022 (156)
41	1000Genomes	NC_000017.10 - 61847322	Oct 12, 2018 (152)
42	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
43	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
44	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
45	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
46	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
47	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
48	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
49	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
50	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
51	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
52	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
53	gnomAD - Genomes Submission ignored due to conflicting rows: Row 511476964 (NC_000017.11:63769961::T 36194/117478) Row 511476965 (NC_000017.11:63769961::TT 175/117554) Row 511476966 (NC_000017.11:63769961::TTT 5/117568)...	-	Apr 26, 2021 (155)
54	8.3KJPN Submission ignored due to conflicting rows: Row 81060963 (NC_000017.10:61847321::T 7633/16308) Row 81060964 (NC_000017.10:61847321:T: 692/16308) Row 81060965 (NC_000017.10:61847321::TT 74/16308)...	-	Apr 26, 2021 (155)
55	8.3KJPN Submission ignored due to conflicting rows: Row 81060963 (NC_000017.10:61847321::T 7633/16308) Row 81060964 (NC_000017.10:61847321:T: 692/16308) Row 81060965 (NC_000017.10:61847321::TT 74/16308)...	-	Apr 26, 2021 (155)
56	8.3KJPN Submission ignored due to conflicting rows: Row 81060963 (NC_000017.10:61847321::T 7633/16308) Row 81060964 (NC_000017.10:61847321:T: 692/16308) Row 81060965 (NC_000017.10:61847321::TT 74/16308)...	-	Apr 26, 2021 (155)
57	8.3KJPN Submission ignored due to conflicting rows: Row 81060963 (NC_000017.10:61847321::T 7633/16308) Row 81060964 (NC_000017.10:61847321:T: 692/16308) Row 81060965 (NC_000017.10:61847321::TT 74/16308)...	-	Apr 26, 2021 (155)
58	14KJPN Submission ignored due to conflicting rows: Row 113349232 (NC_000017.11:63769961::T 13962/28230) Row 113349233 (NC_000017.11:63769961:T: 1229/28230) Row 113349235 (NC_000017.11:63769961::TT 157/28230)...	-	Oct 16, 2022 (156)
59	14KJPN Submission ignored due to conflicting rows: Row 113349232 (NC_000017.11:63769961::T 13962/28230) Row 113349233 (NC_000017.11:63769961:T: 1229/28230) Row 113349235 (NC_000017.11:63769961::TT 157/28230)...	-	Oct 16, 2022 (156)
60	14KJPN Submission ignored due to conflicting rows: Row 113349232 (NC_000017.11:63769961::T 13962/28230) Row 113349233 (NC_000017.11:63769961:T: 1229/28230) Row 113349235 (NC_000017.11:63769961::TT 157/28230)...	-	Oct 16, 2022 (156)
61	14KJPN Submission ignored due to conflicting rows: Row 113349232 (NC_000017.11:63769961::T 13962/28230) Row 113349233 (NC_000017.11:63769961:T: 1229/28230) Row 113349235 (NC_000017.11:63769961::TT 157/28230)...	-	Oct 16, 2022 (156)
62	ALFA	NC_000017.11 - 63769962	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss3015767753	NC_000017.10:61847321:TTTTTTTTT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTT	(self)
ss4314159976	NC_000017.11:63769961:TTTTTTTTT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTT	(self)
4771195406	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTT	(self)
ss5223091659	NC_000017.10:61847321:TTTTTT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss4314159975, ss5779512132	NC_000017.11:63769961:TTTTTT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss4314159974	NC_000017.11:63769961:TTTTT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss4314159973	NC_000017.11:63769961:TTTT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3700746707, ss4314159972, ss5496628546	NC_000017.11:63769961:TTT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4314159971, ss5303635410, ss5496628543	NC_000017.11:63769961:TT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
4771195406	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3700746708	NC_000017.11:63769962:TT:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
72477848, ss1376820259, ss3834935352, ss5223091657	NC_000017.10:61847321:T:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3820096633, ss5303635408, ss5496628544, ss5779512129	NC_000017.11:63769961:T:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
4771195406	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3700746709	NC_000017.11:63769963:T:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss40850634	NT_010783.15:27121489:T:	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3798078999, ss5223091656	NC_000017.10:61847321::T	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss947372675	NC_000017.10:61847322::T	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss4314159965, ss5303635409, ss5496628545, ss5779512128, ss5851860292	NC_000017.11:63769961::T	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
4771195406	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss3700746710	NC_000017.11:63769964::T	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss5223091658	NC_000017.10:61847321::TT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss4314159966, ss5779512131	NC_000017.11:63769961::TT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
4771195406	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss3700746711	NC_000017.11:63769964::TT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss4314159967	NC_000017.11:63769961::TTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	(self)
4771195406	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	(self)
ss4314159968	NC_000017.11:63769961::TTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	(self)
ss4314159969	NC_000017.11:63769961::TTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT	(self)
4771195406	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT	(self)
ss3700746712	NC_000017.11:63769964::TTTTTTTT	NC_000017.11:63769961:TTTTTTTTTTTT… NC_000017.11:63769961:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs397857898

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs397857898