Name: rs3078261
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs3078261

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr20:32573040-32573055 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₈ / del(T)₅ / del(T)₄ / delT…
del(T)₈ / del(T)₅ / del(T)₄ / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₅
Variation Type: Indel Insertion and Deletion
Frequency: delTT=0.1394 (1317/9448, ALFA)
delTT=0.25 (10/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: NOL4L : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	9448	TTTTTTTTTTTTTTTT=0.8582	TTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.1394, TTTTTTTTTTTTTTT=0.0024, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000	0.771113	0.050202	0.178685	32
European	Sub	8666	TTTTTTTTTTTTTTTT=0.8458	TTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.1515, TTTTTTTTTTTTTTT=0.0027, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000	0.750812	0.054292	0.194896	32
African	Sub	420	TTTTTTTTTTTTTTTT=1.000	TTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
African Others	Sub	14	TTTTTTTTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	406	TTTTTTTTTTTTTTTT=1.000	TTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Asian	Sub	4	TTTTTTTTTTTTTTTT=1.0	TTTTTTTT=0.0, TTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
East Asian	Sub	4	TTTTTTTTTTTTTTTT=1.0	TTTTTTTT=0.0, TTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Other Asian	Sub	0	TTTTTTTTTTTTTTTT=0	TTTTTTTT=0, TTTTTTTTTTT=0, TTTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTT=0	0	0	0	N/A
Latin American 1	Sub	48	TTTTTTTTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	122	TTTTTTTTTTTTTTTT=1.000	TTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	32	TTTTTTTTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	156	TTTTTTTTTTTTTTTT=0.974	TTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.026, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000	0.974359	0.025641	0.0	32

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	9448	(T)₁₆=0.8582	del(T)₈=0.0000, del(T)₅=0.0000, delTTT=0.0000, delTT=0.1394, delT=0.0024, dupT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	European	Sub	8666	(T)₁₆=0.8458	del(T)₈=0.0000, del(T)₅=0.0000, delTTT=0.0000, delTT=0.1515, delT=0.0027, dupT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	African	Sub	420	(T)₁₆=1.000	del(T)₈=0.000, del(T)₅=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	156	(T)₁₆=0.974	del(T)₈=0.000, del(T)₅=0.000, delTTT=0.000, delTT=0.026, delT=0.000, dupT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Latin American 2	Sub	122	(T)₁₆=1.000	del(T)₈=0.000, del(T)₅=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Latin American 1	Sub	48	(T)₁₆=1.00	del(T)₈=0.00, del(T)₅=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTTT=0.00
Allele Frequency Aggregator	South Asian	Sub	32	(T)₁₆=1.00	del(T)₈=0.00, del(T)₅=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Asian	Sub	4	(T)₁₆=1.0	del(T)₈=0.0, del(T)₅=0.0, delTTT=0.0, delTT=0.0, delT=0.0, dupT=0.0, dupTTT=0.0
The Danish reference pan genome	Danish	Study-wide	40	(T)₁₆=0.75	delTT=0.25

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 20	NC_000020.11:g.32573048_32573055del
GRCh38.p14 chr 20	NC_000020.11:g.32573051_32573055del
GRCh38.p14 chr 20	NC_000020.11:g.32573052_32573055del
GRCh38.p14 chr 20	NC_000020.11:g.32573053_32573055del
GRCh38.p14 chr 20	NC_000020.11:g.32573054_32573055del
GRCh38.p14 chr 20	NC_000020.11:g.32573055del
GRCh38.p14 chr 20	NC_000020.11:g.32573055dup
GRCh38.p14 chr 20	NC_000020.11:g.32573054_32573055dup
GRCh38.p14 chr 20	NC_000020.11:g.32573053_32573055dup
GRCh38.p14 chr 20	NC_000020.11:g.32573051_32573055dup
GRCh37.p13 chr 20	NC_000020.10:g.31160850_31160857del
GRCh37.p13 chr 20	NC_000020.10:g.31160853_31160857del
GRCh37.p13 chr 20	NC_000020.10:g.31160854_31160857del
GRCh37.p13 chr 20	NC_000020.10:g.31160855_31160857del
GRCh37.p13 chr 20	NC_000020.10:g.31160856_31160857del
GRCh37.p13 chr 20	NC_000020.10:g.31160857del
GRCh37.p13 chr 20	NC_000020.10:g.31160857dup
GRCh37.p13 chr 20	NC_000020.10:g.31160856_31160857dup
GRCh37.p13 chr 20	NC_000020.10:g.31160855_31160857dup
GRCh37.p13 chr 20	NC_000020.10:g.31160853_31160857dup

Gene: NOL4L, nucleolar protein 4 like (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
NOL4L transcript variant 1	NM_001256798.2:c.321+1152… NM_001256798.2:c.321+11523_321+11530del	N/A	Intron Variant
NOL4L transcript variant 3	NM_001351680.2:c.	N/A	Genic Upstream Transcript Variant
NOL4L transcript variant 2	NM_080616.6:c.	N/A	Genic Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₆=	del(T)₈	del(T)₅	del(T)₄	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₅
GRCh38.p14 chr 20	NC_000020.11:g.32573040_32573055=	NC_000020.11:g.32573048_32573055del	NC_000020.11:g.32573051_32573055del	NC_000020.11:g.32573052_32573055del	NC_000020.11:g.32573053_32573055del	NC_000020.11:g.32573054_32573055del	NC_000020.11:g.32573055del	NC_000020.11:g.32573055dup	NC_000020.11:g.32573054_32573055dup	NC_000020.11:g.32573053_32573055dup	NC_000020.11:g.32573051_32573055dup
GRCh37.p13 chr 20	NC_000020.10:g.31160842_31160857=	NC_000020.10:g.31160850_31160857del	NC_000020.10:g.31160853_31160857del	NC_000020.10:g.31160854_31160857del	NC_000020.10:g.31160855_31160857del	NC_000020.10:g.31160856_31160857del	NC_000020.10:g.31160857del	NC_000020.10:g.31160857dup	NC_000020.10:g.31160856_31160857dup	NC_000020.10:g.31160855_31160857dup	NC_000020.10:g.31160853_31160857dup
NOL4L transcript variant 1	NM_001256798.1:c.321+11530=	NM_001256798.1:c.321+11523_321+11530del	NM_001256798.1:c.321+11526_321+11530del	NM_001256798.1:c.321+11527_321+11530del	NM_001256798.1:c.321+11528_321+11530del	NM_001256798.1:c.321+11529_321+11530del	NM_001256798.1:c.321+11530del	NM_001256798.1:c.321+11530dup	NM_001256798.1:c.321+11529_321+11530dup	NM_001256798.1:c.321+11528_321+11530dup	NM_001256798.1:c.321+11526_321+11530dup
NOL4L transcript variant 1	NM_001256798.2:c.321+11530=	NM_001256798.2:c.321+11523_321+11530del	NM_001256798.2:c.321+11526_321+11530del	NM_001256798.2:c.321+11527_321+11530del	NM_001256798.2:c.321+11528_321+11530del	NM_001256798.2:c.321+11529_321+11530del	NM_001256798.2:c.321+11530del	NM_001256798.2:c.321+11530dup	NM_001256798.2:c.321+11529_321+11530dup	NM_001256798.2:c.321+11528_321+11530dup	NM_001256798.2:c.321+11526_321+11530dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

64 SubSNP, 26 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	TSC-CSHL	ss4309691	Jan 05, 2002 (102)
2	DEVINE_LAB	ss8105249	Mar 15, 2016 (147)
3	ABI	ss41364725	Dec 03, 2013 (138)
4	ABI	ss41389398	Mar 15, 2016 (147)
5	HGSV	ss81083512	Dec 15, 2007 (130)
6	HGSV	ss81089575	Dec 15, 2007 (130)
7	HGSV	ss81687619	Dec 15, 2007 (130)
8	HGSV	ss81730406	Dec 15, 2007 (130)
9	HUMANGENOME_JCVI	ss95738958	Oct 12, 2018 (152)
10	HUMANGENOME_JCVI	ss96244773	Oct 12, 2018 (152)
11	BGI	ss104732420	Mar 15, 2016 (147)
12	BGI	ss105498105	Mar 15, 2016 (147)
13	PJP	ss295045638	Aug 21, 2014 (142)
14	PJP	ss295045639	May 09, 2011 (134)
15	SSMP	ss664470961	Apr 01, 2015 (144)
16	SSIP	ss947402578	Jan 10, 2018 (151)
17	EVA_GENOME_DK	ss1575698223	Apr 01, 2015 (144)
18	EVA_UK10K_ALSPAC	ss1709340593	Apr 01, 2015 (144)
19	EVA_UK10K_TWINSUK	ss1709340633	Apr 01, 2015 (144)
20	EVA_UK10K_TWINSUK	ss1710811165	Apr 01, 2015 (144)
21	EVA_UK10K_ALSPAC	ss1710811166	Apr 01, 2015 (144)
22	HAMMER_LAB	ss1809481084	Sep 08, 2015 (146)
23	HAMMER_LAB	ss1809481085	Sep 08, 2015 (146)
24	SWEGEN	ss3018109020	Nov 08, 2017 (151)
25	MCHAISSO	ss3063996532	Nov 08, 2017 (151)
26	MCHAISSO	ss3064853846	Nov 08, 2017 (151)
27	MCHAISSO	ss3065816110	Nov 08, 2017 (151)
28	MCHAISSO	ss3065816111	Nov 08, 2017 (151)
29	URBANLAB	ss3651012226	Oct 12, 2018 (152)
30	EVA_DECODE	ss3706852048	Jul 13, 2019 (153)
31	EVA_DECODE	ss3706852049	Jul 13, 2019 (153)
32	EVA_DECODE	ss3706852050	Jul 13, 2019 (153)
33	EVA_DECODE	ss3706852051	Jul 13, 2019 (153)
34	ACPOP	ss3743356305	Jul 13, 2019 (153)
35	ACPOP	ss3743356306	Jul 13, 2019 (153)
36	EVA	ss3835651518	Apr 27, 2020 (154)
37	KOGIC	ss3982181568	Apr 27, 2020 (154)
38	KOGIC	ss3982181569	Apr 27, 2020 (154)
39	KOGIC	ss3982181570	Apr 27, 2020 (154)
40	KOGIC	ss3982181571	Apr 27, 2020 (154)
41	GNOMAD	ss4352551375	Apr 26, 2021 (155)
42	GNOMAD	ss4352551376	Apr 26, 2021 (155)
43	GNOMAD	ss4352551377	Apr 26, 2021 (155)
44	GNOMAD	ss4352551378	Apr 26, 2021 (155)
45	GNOMAD	ss4352551379	Apr 26, 2021 (155)
46	GNOMAD	ss4352551380	Apr 26, 2021 (155)
47	GNOMAD	ss4352551381	Apr 26, 2021 (155)
48	GNOMAD	ss4352551382	Apr 26, 2021 (155)
49	TOMMO_GENOMICS	ss5229422106	Apr 26, 2021 (155)
50	TOMMO_GENOMICS	ss5229422107	Apr 26, 2021 (155)
51	TOMMO_GENOMICS	ss5229422108	Apr 26, 2021 (155)
52	1000G_HIGH_COVERAGE	ss5308630427	Oct 16, 2022 (156)
53	1000G_HIGH_COVERAGE	ss5308630428	Oct 16, 2022 (156)
54	1000G_HIGH_COVERAGE	ss5308630429	Oct 16, 2022 (156)
55	HUGCELL_USP	ss5500924038	Oct 16, 2022 (156)
56	HUGCELL_USP	ss5500924039	Oct 16, 2022 (156)
57	HUGCELL_USP	ss5500924040	Oct 16, 2022 (156)
58	HUGCELL_USP	ss5500924041	Oct 16, 2022 (156)
59	TOMMO_GENOMICS	ss5789149545	Oct 16, 2022 (156)
60	TOMMO_GENOMICS	ss5789149546	Oct 16, 2022 (156)
61	TOMMO_GENOMICS	ss5789149547	Oct 16, 2022 (156)
62	EVA	ss5845630544	Oct 16, 2022 (156)
63	EVA	ss5845630545	Oct 16, 2022 (156)
64	EVA	ss5853122904	Oct 16, 2022 (156)
65	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 43196249 (NC_000020.10:31160841:TT: 970/3854) Row 43196250 (NC_000020.10:31160841::TTTTT 154/3854)	-	Oct 12, 2018 (152)
66	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 43196249 (NC_000020.10:31160841:TT: 970/3854) Row 43196250 (NC_000020.10:31160841::TTTTT 154/3854)	-	Oct 12, 2018 (152)
67	The Danish reference pan genome	NC_000020.10 - 31160842	Apr 27, 2020 (154)
68	gnomAD - Genomes Submission ignored due to conflicting rows: Row 550443235 (NC_000020.11:32573039::T 136/130686) Row 550443236 (NC_000020.11:32573039::TT 1/130702) Row 550443237 (NC_000020.11:32573039::TTT 1/130706)...	-	Apr 26, 2021 (155)
69	gnomAD - Genomes Submission ignored due to conflicting rows: Row 550443235 (NC_000020.11:32573039::T 136/130686) Row 550443236 (NC_000020.11:32573039::TT 1/130702) Row 550443237 (NC_000020.11:32573039::TTT 1/130706)...	-	Apr 26, 2021 (155)
70	gnomAD - Genomes Submission ignored due to conflicting rows: Row 550443235 (NC_000020.11:32573039::T 136/130686) Row 550443236 (NC_000020.11:32573039::TT 1/130702) Row 550443237 (NC_000020.11:32573039::TTT 1/130706)...	-	Apr 26, 2021 (155)
71	gnomAD - Genomes Submission ignored due to conflicting rows: Row 550443235 (NC_000020.11:32573039::T 136/130686) Row 550443236 (NC_000020.11:32573039::TT 1/130702) Row 550443237 (NC_000020.11:32573039::TTT 1/130706)...	-	Apr 26, 2021 (155)
72	gnomAD - Genomes Submission ignored due to conflicting rows: Row 550443235 (NC_000020.11:32573039::T 136/130686) Row 550443236 (NC_000020.11:32573039::TT 1/130702) Row 550443237 (NC_000020.11:32573039::TTT 1/130706)...	-	Apr 26, 2021 (155)
73	gnomAD - Genomes Submission ignored due to conflicting rows: Row 550443235 (NC_000020.11:32573039::T 136/130686) Row 550443236 (NC_000020.11:32573039::TT 1/130702) Row 550443237 (NC_000020.11:32573039::TTT 1/130706)...	-	Apr 26, 2021 (155)
74	gnomAD - Genomes Submission ignored due to conflicting rows: Row 550443235 (NC_000020.11:32573039::T 136/130686) Row 550443236 (NC_000020.11:32573039::TT 1/130702) Row 550443237 (NC_000020.11:32573039::TTT 1/130706)...	-	Apr 26, 2021 (155)
75	gnomAD - Genomes Submission ignored due to conflicting rows: Row 550443235 (NC_000020.11:32573039::T 136/130686) Row 550443236 (NC_000020.11:32573039::TT 1/130702) Row 550443237 (NC_000020.11:32573039::TTT 1/130706)...	-	Apr 26, 2021 (155)
76	Korean Genome Project Submission ignored due to conflicting rows: Row 38559569 (NC_000020.11:32573040:TT: 1424/1832) Row 38559570 (NC_000020.11:32573039:TTT: 36/1832) Row 38559571 (NC_000020.11:32573041:T: 71/1832)...	-	Apr 27, 2020 (154)
77	Korean Genome Project Submission ignored due to conflicting rows: Row 38559569 (NC_000020.11:32573040:TT: 1424/1832) Row 38559570 (NC_000020.11:32573039:TTT: 36/1832) Row 38559571 (NC_000020.11:32573041:T: 71/1832)...	-	Apr 27, 2020 (154)
78	Korean Genome Project Submission ignored due to conflicting rows: Row 38559569 (NC_000020.11:32573040:TT: 1424/1832) Row 38559570 (NC_000020.11:32573039:TTT: 36/1832) Row 38559571 (NC_000020.11:32573041:T: 71/1832)...	-	Apr 27, 2020 (154)
79	Korean Genome Project Submission ignored due to conflicting rows: Row 38559569 (NC_000020.11:32573040:TT: 1424/1832) Row 38559570 (NC_000020.11:32573039:TTT: 36/1832) Row 38559571 (NC_000020.11:32573041:T: 71/1832)...	-	Apr 27, 2020 (154)
80	Northern Sweden Submission ignored due to conflicting rows: Row 16641170 (NC_000020.10:31160841:TT: 164/600) Row 16641171 (NC_000020.10:31160841:T: 5/600)	-	Jul 13, 2019 (153)
81	Northern Sweden Submission ignored due to conflicting rows: Row 16641170 (NC_000020.10:31160841:TT: 164/600) Row 16641171 (NC_000020.10:31160841:T: 5/600)	-	Jul 13, 2019 (153)
82	8.3KJPN Submission ignored due to conflicting rows: Row 87391413 (NC_000020.10:31160841:TT: 13847/16728) Row 87391414 (NC_000020.10:31160841:T: 358/16728) Row 87391415 (NC_000020.10:31160841:TTT: 49/16728)	-	Apr 26, 2021 (155)
83	8.3KJPN Submission ignored due to conflicting rows: Row 87391413 (NC_000020.10:31160841:TT: 13847/16728) Row 87391414 (NC_000020.10:31160841:T: 358/16728) Row 87391415 (NC_000020.10:31160841:TTT: 49/16728)	-	Apr 26, 2021 (155)
84	8.3KJPN Submission ignored due to conflicting rows: Row 87391413 (NC_000020.10:31160841:TT: 13847/16728) Row 87391414 (NC_000020.10:31160841:T: 358/16728) Row 87391415 (NC_000020.10:31160841:TTT: 49/16728)	-	Apr 26, 2021 (155)
85	14KJPN Submission ignored due to conflicting rows: Row 122986649 (NC_000020.11:32573039:TT: 23436/28250) Row 122986650 (NC_000020.11:32573039:T: 624/28250) Row 122986651 (NC_000020.11:32573039:TTT: 73/28250)	-	Oct 16, 2022 (156)
86	14KJPN Submission ignored due to conflicting rows: Row 122986649 (NC_000020.11:32573039:TT: 23436/28250) Row 122986650 (NC_000020.11:32573039:T: 624/28250) Row 122986651 (NC_000020.11:32573039:TTT: 73/28250)	-	Oct 16, 2022 (156)
87	14KJPN Submission ignored due to conflicting rows: Row 122986649 (NC_000020.11:32573039:TT: 23436/28250) Row 122986650 (NC_000020.11:32573039:T: 624/28250) Row 122986651 (NC_000020.11:32573039:TTT: 73/28250)	-	Oct 16, 2022 (156)
88	UK 10K study - Twins Submission ignored due to conflicting rows: Row 43196249 (NC_000020.10:31160841:TT: 1028/3708) Row 43196250 (NC_000020.10:31160841::TTTTT 107/3708)	-	Oct 12, 2018 (152)
89	UK 10K study - Twins Submission ignored due to conflicting rows: Row 43196249 (NC_000020.10:31160841:TT: 1028/3708) Row 43196250 (NC_000020.10:31160841::TTTTT 107/3708)	-	Oct 12, 2018 (152)
90	ALFA	NC_000020.11 - 32573040	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs869064259	Jul 19, 2016 (147)
rs796787608	Nov 08, 2017 (151)
rs63530060	May 11, 2012 (137)
rs72588543	Feb 27, 2009 (130)
rs59621759	May 25, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
7488529327	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTT	(self)
ss4352551382	NC_000020.11:32573039:TTTTT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTT	(self)
7488529327	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss4352551381	NC_000020.11:32573039:TTTT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss5229422108, ss5845630545	NC_000020.10:31160841:TTT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3706852048, ss3982181569, ss4352551380, ss5500924041, ss5789149547	NC_000020.11:32573039:TTT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
7488529327	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss295045638	NC_000020.9:30624502:TT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss81083512, ss81089575, ss81687619, ss81730406, ss295045639	NC_000020.9:30624516:TT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
755909, ss664470961, ss1575698223, ss1709340593, ss1709340633, ss1809481085, ss3018109020, ss3743356305, ss3835651518, ss5229422106, ss5845630544	NC_000020.10:31160841:TT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss947402578	NC_000020.10:31160842:TT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3063996532, ss3064853846, ss3065816110, ss3065816111, ss3651012226, ss4352551379, ss5308630427, ss5500924038, ss5789149545, ss5853122904	NC_000020.11:32573039:TT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
7488529327	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3706852049, ss3982181568	NC_000020.11:32573040:TT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4309691	NT_011362.10:1356947:TT:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss1809481084, ss3743356306, ss5229422107	NC_000020.10:31160841:T:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4352551378, ss5308630428, ss5500924039, ss5789149546	NC_000020.11:32573039:T:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
7488529327	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3706852050, ss3982181570	NC_000020.11:32573041:T:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss8105249	NT_011362.10:1356933:T:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss41364725	NT_011362.10:1356947:T:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss41389398, ss95738958, ss96244773, ss104732420, ss105498105	NT_011362.10:1356948:T:	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4352551375, ss5308630429, ss5500924040	NC_000020.11:32573039::T	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
7488529327	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss3706852051, ss3982181571	NC_000020.11:32573042::T	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss95738958, ss96244773, ss104732420, ss105498105	NT_011362.10:1356948:T:TT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss4352551376	NC_000020.11:32573039::TT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss4352551377	NC_000020.11:32573039::TTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
7488529327	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
	NC_000020.10:31160841::TTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	(self)
ss1710811165, ss1710811166	NC_000020.10:31160843::TTTTT	NC_000020.11:32573039:TTTTTTTTTTTT… NC_000020.11:32573039:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs3078261

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs3078261