Name: rs1553287608
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1553287608

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr1:246857965-246857977 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₆ / del(T)₅ / del(T)₄ / delT…
del(T)₆ / del(T)₅ / del(T)₄ / delTT / delT / dupT / dupTTT / dup(T)₄
Variation Type: Indel Insertion and Deletion
Frequency: dupT=0.00124 (35/28248, 14KJPN)
dupT=0.00120 (20/16724, 8.3KJPN)
dupTTT=0.0439 (169/3854, ALSPAC) (+ 7 more)
dupTTT=0.0539 (200/3708, TWINSUK)
del(T)₆=0.0000 (0/3472, ALFA)
del(T)₅=0.0000 (0/3472, ALFA)
del(T)₄=0.0000 (0/3472, ALFA)
delTT=0.0000 (0/3472, ALFA)
dupT=0.0000 (0/3472, ALFA)
dup(T)₄=0.0000 (0/3472, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: AHCTF1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	HWEP
Total	Global	3472	TTTTTTTTTTTTT=1.0000	TTTTTTT=0.0000, TTTTTTTT=0.0000, TTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000	1.0	N/A
European	Sub	2488	TTTTTTTTTTTTT=1.0000	TTTTTTT=0.0000, TTTTTTTT=0.0000, TTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000	1.0	N/A
African	Sub	572	TTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTT=0.000, TTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	N/A
African Others	Sub	18	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	N/A
African American	Sub	554	TTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTT=0.000, TTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	N/A
Asian	Sub	30	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	N/A
East Asian	Sub	26	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	N/A
Other Asian	Sub	4	TTTTTTTTTTTTT=1.0	TTTTTTT=0.0, TTTTTTTT=0.0, TTTTTTTTT=0.0, TTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTT=0.0	1.0	N/A
Latin American 1	Sub	36	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	N/A
Latin American 2	Sub	186	TTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTT=0.000, TTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	N/A
South Asian	Sub	28	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	N/A
Other	Sub	132	TTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTT=0.000, TTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
14KJPN	JAPANESE	Study-wide	28248	- No frequency provided	dupT=0.00124
8.3KJPN	JAPANESE	Study-wide	16724	- No frequency provided	dupT=0.00120
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	- No frequency provided	dupTTT=0.0439
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	- No frequency provided	dupTTT=0.0539
Allele Frequency Aggregator	Total	Global	3472	(T)₁₃=1.0000	del(T)₆=0.0000, del(T)₅=0.0000, del(T)₄=0.0000, delTT=0.0000, dupT=0.0000, dup(T)₄=0.0000
Allele Frequency Aggregator	European	Sub	2488	(T)₁₃=1.0000	del(T)₆=0.0000, del(T)₅=0.0000, del(T)₄=0.0000, delTT=0.0000, dupT=0.0000, dup(T)₄=0.0000
Allele Frequency Aggregator	African	Sub	572	(T)₁₃=1.000	del(T)₆=0.000, del(T)₅=0.000, del(T)₄=0.000, delTT=0.000, dupT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Latin American 2	Sub	186	(T)₁₃=1.000	del(T)₆=0.000, del(T)₅=0.000, del(T)₄=0.000, delTT=0.000, dupT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Other	Sub	132	(T)₁₃=1.000	del(T)₆=0.000, del(T)₅=0.000, del(T)₄=0.000, delTT=0.000, dupT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Latin American 1	Sub	36	(T)₁₃=1.00	del(T)₆=0.00, del(T)₅=0.00, del(T)₄=0.00, delTT=0.00, dupT=0.00, dup(T)₄=0.00
Allele Frequency Aggregator	Asian	Sub	30	(T)₁₃=1.00	del(T)₆=0.00, del(T)₅=0.00, del(T)₄=0.00, delTT=0.00, dupT=0.00, dup(T)₄=0.00
Allele Frequency Aggregator	South Asian	Sub	28	(T)₁₃=1.00	del(T)₆=0.00, del(T)₅=0.00, del(T)₄=0.00, delTT=0.00, dupT=0.00, dup(T)₄=0.00

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 1	NC_000001.11:g.246857972_246857977del
GRCh38.p14 chr 1	NC_000001.11:g.246857973_246857977del
GRCh38.p14 chr 1	NC_000001.11:g.246857974_246857977del
GRCh38.p14 chr 1	NC_000001.11:g.246857976_246857977del
GRCh38.p14 chr 1	NC_000001.11:g.246857977del
GRCh38.p14 chr 1	NC_000001.11:g.246857977dup
GRCh38.p14 chr 1	NC_000001.11:g.246857975_246857977dup
GRCh38.p14 chr 1	NC_000001.11:g.246857974_246857977dup
GRCh37.p13 chr 1	NC_000001.10:g.247021274_247021279del
GRCh37.p13 chr 1	NC_000001.10:g.247021275_247021279del
GRCh37.p13 chr 1	NC_000001.10:g.247021276_247021279del
GRCh37.p13 chr 1	NC_000001.10:g.247021278_247021279del
GRCh37.p13 chr 1	NC_000001.10:g.247021279del
GRCh37.p13 chr 1	NC_000001.10:g.247021279dup
GRCh37.p13 chr 1	NC_000001.10:g.247021277_247021279dup
GRCh37.p13 chr 1	NC_000001.10:g.247021276_247021279dup

Gene: AHCTF1, AT-hook containing transcription factor 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
AHCTF1 transcript variant 2	NM_001323342.2:c.4133-156… NM_001323342.2:c.4133-156_4133-151del	N/A	Intron Variant
AHCTF1 transcript variant 3	NM_001323343.2:c.4133-156… NM_001323343.2:c.4133-156_4133-151del	N/A	Intron Variant
AHCTF1 transcript variant 1	NM_015446.5:c.4160-156_41… NM_015446.5:c.4160-156_4160-151del	N/A	Intron Variant
AHCTF1 transcript variant 4	NR_136586.2:n.	N/A	Intron Variant
AHCTF1 transcript variant X1	XM_006711758.1:c.4238-156… XM_006711758.1:c.4238-156_4238-151del	N/A	Intron Variant
AHCTF1 transcript variant X1	XM_011544156.3:c.4238-156… XM_011544156.3:c.4238-156_4238-151del	N/A	Intron Variant
AHCTF1 transcript variant X2	XM_011544157.4:c.4238-156… XM_011544157.4:c.4238-156_4238-151del	N/A	Intron Variant
AHCTF1 transcript variant X3	XM_047417231.1:c.4238-156… XM_047417231.1:c.4238-156_4238-151del	N/A	Intron Variant
AHCTF1 transcript variant X4	XM_047417232.1:c.4238-156… XM_047417232.1:c.4238-156_4238-151del	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₃=	del(T)₆	del(T)₅	del(T)₄	delTT	delT	dupT	dupTTT	dup(T)₄
GRCh38.p14 chr 1	NC_000001.11:g.246857965_246857977=	NC_000001.11:g.246857972_246857977del	NC_000001.11:g.246857973_246857977del	NC_000001.11:g.246857974_246857977del	NC_000001.11:g.246857976_246857977del	NC_000001.11:g.246857977del	NC_000001.11:g.246857977dup	NC_000001.11:g.246857975_246857977dup	NC_000001.11:g.246857974_246857977dup
GRCh37.p13 chr 1	NC_000001.10:g.247021267_247021279=	NC_000001.10:g.247021274_247021279del	NC_000001.10:g.247021275_247021279del	NC_000001.10:g.247021276_247021279del	NC_000001.10:g.247021278_247021279del	NC_000001.10:g.247021279del	NC_000001.10:g.247021279dup	NC_000001.10:g.247021277_247021279dup	NC_000001.10:g.247021276_247021279dup
AHCTF1 transcript variant 2	NM_001323342.2:c.4133-151=	NM_001323342.2:c.4133-156_4133-151del	NM_001323342.2:c.4133-155_4133-151del	NM_001323342.2:c.4133-154_4133-151del	NM_001323342.2:c.4133-152_4133-151del	NM_001323342.2:c.4133-151del	NM_001323342.2:c.4133-151dup	NM_001323342.2:c.4133-153_4133-151dup	NM_001323342.2:c.4133-154_4133-151dup
AHCTF1 transcript variant 3	NM_001323343.2:c.4133-151=	NM_001323343.2:c.4133-156_4133-151del	NM_001323343.2:c.4133-155_4133-151del	NM_001323343.2:c.4133-154_4133-151del	NM_001323343.2:c.4133-152_4133-151del	NM_001323343.2:c.4133-151del	NM_001323343.2:c.4133-151dup	NM_001323343.2:c.4133-153_4133-151dup	NM_001323343.2:c.4133-154_4133-151dup
AHCTF1 transcript variant 1	NM_015446.4:c.4160-151=	NM_015446.4:c.4160-156_4160-151del	NM_015446.4:c.4160-155_4160-151del	NM_015446.4:c.4160-154_4160-151del	NM_015446.4:c.4160-152_4160-151del	NM_015446.4:c.4160-151del	NM_015446.4:c.4160-151dup	NM_015446.4:c.4160-153_4160-151dup	NM_015446.4:c.4160-154_4160-151dup
AHCTF1 transcript variant 1	NM_015446.5:c.4160-151=	NM_015446.5:c.4160-156_4160-151del	NM_015446.5:c.4160-155_4160-151del	NM_015446.5:c.4160-154_4160-151del	NM_015446.5:c.4160-152_4160-151del	NM_015446.5:c.4160-151del	NM_015446.5:c.4160-151dup	NM_015446.5:c.4160-153_4160-151dup	NM_015446.5:c.4160-154_4160-151dup
AHCTF1 transcript variant X1	XM_006711758.1:c.4238-151=	XM_006711758.1:c.4238-156_4238-151del	XM_006711758.1:c.4238-155_4238-151del	XM_006711758.1:c.4238-154_4238-151del	XM_006711758.1:c.4238-152_4238-151del	XM_006711758.1:c.4238-151del	XM_006711758.1:c.4238-151dup	XM_006711758.1:c.4238-153_4238-151dup	XM_006711758.1:c.4238-154_4238-151dup
AHCTF1 transcript variant X1	XM_011544156.3:c.4238-151=	XM_011544156.3:c.4238-156_4238-151del	XM_011544156.3:c.4238-155_4238-151del	XM_011544156.3:c.4238-154_4238-151del	XM_011544156.3:c.4238-152_4238-151del	XM_011544156.3:c.4238-151del	XM_011544156.3:c.4238-151dup	XM_011544156.3:c.4238-153_4238-151dup	XM_011544156.3:c.4238-154_4238-151dup
AHCTF1 transcript variant X2	XM_011544157.4:c.4238-151=	XM_011544157.4:c.4238-156_4238-151del	XM_011544157.4:c.4238-155_4238-151del	XM_011544157.4:c.4238-154_4238-151del	XM_011544157.4:c.4238-152_4238-151del	XM_011544157.4:c.4238-151del	XM_011544157.4:c.4238-151dup	XM_011544157.4:c.4238-153_4238-151dup	XM_011544157.4:c.4238-154_4238-151dup
AHCTF1 transcript variant X3	XM_047417231.1:c.4238-151=	XM_047417231.1:c.4238-156_4238-151del	XM_047417231.1:c.4238-155_4238-151del	XM_047417231.1:c.4238-154_4238-151del	XM_047417231.1:c.4238-152_4238-151del	XM_047417231.1:c.4238-151del	XM_047417231.1:c.4238-151dup	XM_047417231.1:c.4238-153_4238-151dup	XM_047417231.1:c.4238-154_4238-151dup
AHCTF1 transcript variant X4	XM_047417232.1:c.4238-151=	XM_047417232.1:c.4238-156_4238-151del	XM_047417232.1:c.4238-155_4238-151del	XM_047417232.1:c.4238-154_4238-151del	XM_047417232.1:c.4238-152_4238-151del	XM_047417232.1:c.4238-151del	XM_047417232.1:c.4238-151dup	XM_047417232.1:c.4238-153_4238-151dup	XM_047417232.1:c.4238-154_4238-151dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

14 SubSNP, 11 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	EVA_UK10K_ALSPAC	ss1702061251	Apr 01, 2015 (144)
2	EVA_UK10K_TWINSUK	ss1702061402	Apr 01, 2015 (144)
3	MCHAISSO	ss3065361497	Jan 10, 2018 (151)
4	GNOMAD	ss4014951444	Apr 25, 2021 (155)
5	GNOMAD	ss4014951449	Apr 25, 2021 (155)
6	GNOMAD	ss4014951450	Apr 25, 2021 (155)
7	GNOMAD	ss4014951451	Apr 25, 2021 (155)
8	GNOMAD	ss4014951452	Apr 25, 2021 (155)
9	GNOMAD	ss4014951453	Apr 25, 2021 (155)
10	TOMMO_GENOMICS	ss5149421327	Apr 25, 2021 (155)
11	1000G_HIGH_COVERAGE	ss5246557533	Oct 12, 2022 (156)
12	HUGCELL_USP	ss5446916628	Oct 12, 2022 (156)
13	TOMMO_GENOMICS	ss5677467766	Oct 12, 2022 (156)
14	EVA	ss5848291018	Oct 12, 2022 (156)
15	The Avon Longitudinal Study of Parents and Children	NC_000001.10 - 247021267	Oct 11, 2018 (152)
16	gnomAD - Genomes Submission ignored due to conflicting rows: Row 45709250 (NC_000001.11:246857964::T 40/136120) Row 45709255 (NC_000001.11:246857964::TTTT 1/136120) Row 45709256 (NC_000001.11:246857964:T: 2/136120)...	-	Apr 25, 2021 (155)
17	gnomAD - Genomes Submission ignored due to conflicting rows: Row 45709250 (NC_000001.11:246857964::T 40/136120) Row 45709255 (NC_000001.11:246857964::TTTT 1/136120) Row 45709256 (NC_000001.11:246857964:T: 2/136120)...	-	Apr 25, 2021 (155)
18	gnomAD - Genomes Submission ignored due to conflicting rows: Row 45709250 (NC_000001.11:246857964::T 40/136120) Row 45709255 (NC_000001.11:246857964::TTTT 1/136120) Row 45709256 (NC_000001.11:246857964:T: 2/136120)...	-	Apr 25, 2021 (155)
19	gnomAD - Genomes Submission ignored due to conflicting rows: Row 45709250 (NC_000001.11:246857964::T 40/136120) Row 45709255 (NC_000001.11:246857964::TTTT 1/136120) Row 45709256 (NC_000001.11:246857964:T: 2/136120)...	-	Apr 25, 2021 (155)
20	gnomAD - Genomes Submission ignored due to conflicting rows: Row 45709250 (NC_000001.11:246857964::T 40/136120) Row 45709255 (NC_000001.11:246857964::TTTT 1/136120) Row 45709256 (NC_000001.11:246857964:T: 2/136120)...	-	Apr 25, 2021 (155)
21	gnomAD - Genomes Submission ignored due to conflicting rows: Row 45709250 (NC_000001.11:246857964::T 40/136120) Row 45709255 (NC_000001.11:246857964::TTTT 1/136120) Row 45709256 (NC_000001.11:246857964:T: 2/136120)...	-	Apr 25, 2021 (155)
22	8.3KJPN	NC_000001.10 - 247021267	Apr 25, 2021 (155)
23	14KJPN	NC_000001.11 - 246857965	Oct 12, 2022 (156)
24	UK 10K study - Twins	NC_000001.10 - 247021267	Oct 11, 2018 (152)
25	ALFA	NC_000001.11 - 246857965	Apr 25, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
10625327319	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTT	(self)
ss4014951453	NC_000001.11:246857964:TTTTT:	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTT	(self)
10625327319	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTT	(self)
ss4014951452	NC_000001.11:246857964:TTTT:	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTT	(self)
10625327319	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTT	(self)
ss3065361497, ss4014951451, ss5246557533, ss5446916628	NC_000001.11:246857964:TT:	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
10625327319	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss4014951450	NC_000001.11:246857964:T:	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
7390634, ss5149421327	NC_000001.10:247021266::T	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
11304870, ss4014951444, ss5677467766	NC_000001.11:246857964::T	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
10625327319	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
3543899, 3543899, ss1702061251, ss1702061402	NC_000001.10:247021266::TTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss5848291018	NC_000001.10:247021279::TTTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT
ss4014951449	NC_000001.11:246857964::TTTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
10625327319	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	NC_000001.11:246857964:TTTTTTTTTTT… NC_000001.11:246857964:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1553287608

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs1553287608