dbSNP Short Genetic Variations
Welcome to the Reference SNP (rs) Report
All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.
Reference SNP (rs) Report
This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.
rs1489471187
Current Build 156
Released September 21, 2022
- Organism
- Homo sapiens
- Position
-
chr17:7890604 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
- Alleles
- G>A
- Variation Type
- SNV Single Nucleotide Variation
- Frequency
-
A=0.000004 (1/237922, GnomAD_exome)A=0.000007 (1/139996, GnomAD)
- Clinical Significance
- Not Reported in ClinVar
- Gene : Consequence
- CHD3 : Missense Variant
- Publications
- 0 citations
- Genomic View
- See rs on genome
Help
Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").
Download| Study | Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| gnomAD - Exomes | Global | Study-wide | 237922 | G=0.999996 | A=0.000004 |
| gnomAD - Exomes | European | Sub | 130352 | G=0.999992 | A=0.000008 |
| gnomAD - Exomes | Asian | Sub | 46418 | G=1.00000 | A=0.00000 |
| gnomAD - Exomes | American | Sub | 30780 | G=1.00000 | A=0.00000 |
| gnomAD - Exomes | African | Sub | 15468 | G=1.00000 | A=0.00000 |
| gnomAD - Exomes | Ashkenazi Jewish | Sub | 9238 | G=1.0000 | A=0.0000 |
| gnomAD - Exomes | Other | Sub | 5666 | G=1.0000 | A=0.0000 |
| gnomAD - Genomes | Global | Study-wide | 139996 | G=0.999993 | A=0.000007 |
| gnomAD - Genomes | European | Sub | 75866 | G=0.99999 | A=0.00001 |
| gnomAD - Genomes | African | Sub | 41910 | G=1.00000 | A=0.00000 |
| gnomAD - Genomes | American | Sub | 13622 | G=1.00000 | A=0.00000 |
| gnomAD - Genomes | Ashkenazi Jewish | Sub | 3320 | G=1.0000 | A=0.0000 |
| gnomAD - Genomes | East Asian | Sub | 3128 | G=1.0000 | A=0.0000 |
| gnomAD - Genomes | Other | Sub | 2150 | G=1.0000 | A=0.0000 |
Help
Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.
Genomic Placements
| Sequence name | Change |
|---|---|
| GRCh38.p14 chr 17 | NC_000017.11:g.7890604G>A |
| GRCh37.p13 chr 17 | NC_000017.10:g.7793922G>A |
Gene: CHD3, chromodomain helicase DNA binding protein 3
(plus strand)
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| CHD3 transcript variant 3 | NM_001005271.3:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform 3 | NP_001005271.2:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant 2 | NM_005852.4:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform 2 | NP_005843.2:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant 1 | NM_001005273.3:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform 1 | NP_001005273.1:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X39 | XM_017024069.2:c.-258= | N/A | 5 Prime UTR Variant |
| CHD3 transcript variant X40 | XM_047435216.1:c.-258= | N/A | 5 Prime UTR Variant |
| CHD3 transcript variant X1 | XM_005256427.5:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X1 | XP_005256484.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X2 | XM_006721423.4:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X2 | XP_006721486.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X3 | XM_006721424.4:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X3 | XP_006721487.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X4 | XM_047435190.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X4 | XP_047291146.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X5 | XM_005256428.5:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X5 | XP_005256485.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X6 | XM_047435191.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X6 | XP_047291147.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X7 | XM_005256429.5:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X7 | XP_005256486.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X8 | XM_047435192.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X8 | XP_047291148.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X9 | XM_017024063.2:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X9 | XP_016879552.1:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X10 | XM_017024064.2:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X10 | XP_016879553.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X11 | XM_047435193.1:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X11 | XP_047291149.1:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X12 | XM_047435194.1:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X12 | XP_047291150.1:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X13 | XM_047435195.1:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X13 | XP_047291151.1:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X14 | XM_017024065.2:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X14 | XP_016879554.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X15 | XM_047435196.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X15 | XP_047291152.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X16 | XM_017024066.2:c.217G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X16 | XP_016879555.2:p.Glu73Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X17 | XM_017024067.3:c.214G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X17 | XP_016879556.1:p.Glu72Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X18 | XM_047435197.1:c.214G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X17 | XP_047291153.1:p.Glu72Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X19 | XM_047435198.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X18 | XP_047291154.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X20 | XM_017024068.2:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X19 | XP_016879557.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X21 | XM_047435199.1:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X19 | XP_047291155.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X22 | XM_047435200.1:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X20 | XP_047291156.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X23 | XM_047435201.1:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X21 | XP_047291157.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X24 | XM_006721428.4:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X22 | XP_006721491.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X25 | XM_047435202.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X23 | XP_047291158.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X26 | XM_047435203.1:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X24 | XP_047291159.1:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X27 | XM_047435204.1:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X25 | XP_047291160.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X28 | XM_047435205.1:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X26 | XP_047291161.1:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X29 | XM_047435206.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X27 | XP_047291162.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X30 | XM_047435207.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X28 | XP_047291163.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X31 | XM_047435208.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X29 | XP_047291164.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X32 | XM_047435209.1:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X30 | XP_047291165.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X33 | XM_047435210.1:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X31 | XP_047291166.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X34 | XM_047435211.1:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X32 | XP_047291167.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X35 | XM_047435212.1:c.247G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X33 | XP_047291168.1:p.Glu83Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X36 | XM_047435213.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X34 | XP_047291169.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X37 | XM_047435214.1:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X35 | XP_047291170.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X38 | XM_047435215.1:c.187G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X36 | XP_047291171.1:p.Glu63Lys | E (Glu) > K (Lys) | Missense Variant |
| CHD3 transcript variant X41 | XM_005256431.5:c.424G>A | E [GAG] > K [AAG] | Coding Sequence Variant |
| chromodomain-helicase-DNA-binding protein 3 isoform X38 | XP_005256488.1:p.Glu142Lys | E (Glu) > K (Lys) | Missense Variant |
Help
Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.
Not Reported in ClinVar
Help
Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".
| Placement | G= | A |
|---|---|---|
| GRCh38.p14 chr 17 | NC_000017.11:g.7890604= | NC_000017.11:g.7890604G>A |
| GRCh37.p13 chr 17 | NC_000017.10:g.7793922= | NC_000017.10:g.7793922G>A |
| CHD3 transcript variant X1 | XM_005256427.5:c.424= | XM_005256427.5:c.424G>A |
| CHD3 transcript variant X1 | XM_005256427.4:c.424= | XM_005256427.4:c.424G>A |
| CHD3 transcript variant X1 | XM_005256427.3:c.424= | XM_005256427.3:c.424G>A |
| CHD3 transcript variant X1 | XM_005256427.2:c.424= | XM_005256427.2:c.424G>A |
| CHD3 transcript variant X1 | XM_005256427.1:c.424= | XM_005256427.1:c.424G>A |
| CHD3 transcript variant X7 | XM_005256429.5:c.424= | XM_005256429.5:c.424G>A |
| CHD3 transcript variant X7 | XM_005256429.4:c.424= | XM_005256429.4:c.424G>A |
| CHD3 transcript variant X5 | XM_005256429.3:c.424= | XM_005256429.3:c.424G>A |
| CHD3 transcript variant X3 | XM_005256429.2:c.424= | XM_005256429.2:c.424G>A |
| CHD3 transcript variant X3 | XM_005256429.1:c.424= | XM_005256429.1:c.424G>A |
| CHD3 transcript variant X5 | XM_005256428.5:c.424= | XM_005256428.5:c.424G>A |
| CHD3 transcript variant X6 | XM_005256428.4:c.424= | XM_005256428.4:c.424G>A |
| CHD3 transcript variant X4 | XM_005256428.3:c.424= | XM_005256428.3:c.424G>A |
| CHD3 transcript variant X2 | XM_005256428.2:c.424= | XM_005256428.2:c.424G>A |
| CHD3 transcript variant X2 | XM_005256428.1:c.424= | XM_005256428.1:c.424G>A |
| CHD3 transcript variant X41 | XM_005256431.5:c.424= | XM_005256431.5:c.424G>A |
| CHD3 transcript variant X16 | XM_005256431.4:c.424= | XM_005256431.4:c.424G>A |
| CHD3 transcript variant X12 | XM_005256431.3:c.424= | XM_005256431.3:c.424G>A |
| CHD3 transcript variant X5 | XM_005256431.2:c.424= | XM_005256431.2:c.424G>A |
| CHD3 transcript variant X5 | XM_005256431.1:c.424= | XM_005256431.1:c.424G>A |
| CHD3 transcript variant X2 | XM_006721423.4:c.424= | XM_006721423.4:c.424G>A |
| CHD3 transcript variant X2 | XM_006721423.3:c.424= | XM_006721423.3:c.424G>A |
| CHD3 transcript variant X2 | XM_006721423.2:c.424= | XM_006721423.2:c.424G>A |
| CHD3 transcript variant X6 | XM_006721423.1:c.424= | XM_006721423.1:c.424G>A |
| CHD3 transcript variant X3 | XM_006721424.4:c.424= | XM_006721424.4:c.424G>A |
| CHD3 transcript variant X3 | XM_006721424.3:c.424= | XM_006721424.3:c.424G>A |
| CHD3 transcript variant X3 | XM_006721424.2:c.424= | XM_006721424.2:c.424G>A |
| CHD3 transcript variant X7 | XM_006721424.1:c.424= | XM_006721424.1:c.424G>A |
| CHD3 transcript variant 2 | NM_005852.4:c.247= | NM_005852.4:c.247G>A |
| CHD3 transcript variant 2 | NM_005852.3:c.247= | NM_005852.3:c.247G>A |
| CHD3 transcript variant X24 | XM_006721428.4:c.424= | XM_006721428.4:c.424G>A |
| CHD3 transcript variant X14 | XM_006721428.3:c.424= | XM_006721428.3:c.424G>A |
| CHD3 transcript variant X8 | XM_006721428.2:c.424= | XM_006721428.2:c.424G>A |
| CHD3 transcript variant X11 | XM_006721428.1:c.424= | XM_006721428.1:c.424G>A |
| CHD3 transcript variant X17 | XM_017024067.3:c.214= | XM_017024067.3:c.214G>A |
| CHD3 transcript variant X12 | XM_017024067.2:c.214= | XM_017024067.2:c.214G>A |
| CHD3 transcript variant X12 | XM_017024067.1:c.214= | XM_017024067.1:c.214G>A |
| CHD3 transcript variant 1 | NM_001005273.3:c.247= | NM_001005273.3:c.247G>A |
| CHD3 transcript variant 1 | NM_001005273.2:c.247= | NM_001005273.2:c.247G>A |
| CHD3 transcript variant 3 | NM_001005271.3:c.424= | NM_001005271.3:c.424G>A |
| CHD3 transcript variant 3 | NM_001005271.2:c.424= | NM_001005271.2:c.424G>A |
| CHD3 transcript variant X16 | XM_017024066.2:c.217= | XM_017024066.2:c.217G>A |
| CHD3 transcript variant X11 | XM_017024066.1:c.187= | XM_017024066.1:c.187G>A |
| CHD3 transcript variant X9 | XM_017024063.2:c.247= | XM_017024063.2:c.247G>A |
| CHD3 transcript variant X8 | XM_017024063.1:c.247= | XM_017024063.1:c.247G>A |
| CHD3 transcript variant X20 | XM_017024068.2:c.187= | XM_017024068.2:c.187G>A |
| CHD3 transcript variant X13 | XM_017024068.1:c.187= | XM_017024068.1:c.187G>A |
| CHD3 transcript variant X10 | XM_017024064.2:c.424= | XM_017024064.2:c.424G>A |
| CHD3 transcript variant X9 | XM_017024064.1:c.424= | XM_017024064.1:c.424G>A |
| CHD3 transcript variant X39 | XM_017024069.2:c.-258= | XM_017024069.2:c.-258G>A |
| CHD3 transcript variant X15 | XM_017024069.1:c.-258= | XM_017024069.1:c.-258G>A |
| CHD3 transcript variant X14 | XM_017024065.2:c.424= | XM_017024065.2:c.424G>A |
| CHD3 transcript variant X10 | XM_017024065.1:c.424= | XM_017024065.1:c.424G>A |
| CHD3 transcript variant X11 | XM_047435193.1:c.247= | XM_047435193.1:c.247G>A |
| CHD3 transcript variant X12 | XM_047435194.1:c.247= | XM_047435194.1:c.247G>A |
| CHD3 transcript variant X13 | XM_047435195.1:c.247= | XM_047435195.1:c.247G>A |
| CHD3 transcript variant X4 | XM_047435190.1:c.424= | XM_047435190.1:c.424G>A |
| CHD3 transcript variant X26 | XM_047435203.1:c.247= | XM_047435203.1:c.247G>A |
| CHD3 transcript variant X28 | XM_047435205.1:c.247= | XM_047435205.1:c.247G>A |
| CHD3 transcript variant X34 | XM_047435211.1:c.187= | XM_047435211.1:c.187G>A |
| CHD3 transcript variant X8 | XM_047435192.1:c.424= | XM_047435192.1:c.424G>A |
| CHD3 transcript variant X18 | XM_047435197.1:c.214= | XM_047435197.1:c.214G>A |
| CHD3 transcript variant X21 | XM_047435199.1:c.187= | XM_047435199.1:c.187G>A |
| CHD3 transcript variant X22 | XM_047435200.1:c.187= | XM_047435200.1:c.187G>A |
| CHD3 transcript variant X23 | XM_047435201.1:c.187= | XM_047435201.1:c.187G>A |
| CHD3 transcript variant X27 | XM_047435204.1:c.187= | XM_047435204.1:c.187G>A |
| CHD3 transcript variant X33 | XM_047435210.1:c.187= | XM_047435210.1:c.187G>A |
| CHD3 transcript variant X6 | XM_047435191.1:c.424= | XM_047435191.1:c.424G>A |
| CHD3 transcript variant X32 | XM_047435209.1:c.187= | XM_047435209.1:c.187G>A |
| CHD3 transcript variant X35 | XM_047435212.1:c.247= | XM_047435212.1:c.247G>A |
| CHD3 transcript variant X40 | XM_047435216.1:c.-258= | XM_047435216.1:c.-258G>A |
| CHD3 transcript variant X25 | XM_047435202.1:c.424= | XM_047435202.1:c.424G>A |
| CHD3 transcript variant X15 | XM_047435196.1:c.424= | XM_047435196.1:c.424G>A |
| CHD3 transcript variant X19 | XM_047435198.1:c.424= | XM_047435198.1:c.424G>A |
| CHD3 transcript variant X38 | XM_047435215.1:c.187= | XM_047435215.1:c.187G>A |
| CHD3 transcript variant X29 | XM_047435206.1:c.424= | XM_047435206.1:c.424G>A |
| CHD3 transcript variant X30 | XM_047435207.1:c.424= | XM_047435207.1:c.424G>A |
| CHD3 transcript variant X31 | XM_047435208.1:c.424= | XM_047435208.1:c.424G>A |
| CHD3 transcript variant X36 | XM_047435213.1:c.424= | XM_047435213.1:c.424G>A |
| CHD3 transcript variant X37 | XM_047435214.1:c.424= | XM_047435214.1:c.424G>A |
| chromodomain-helicase-DNA-binding protein 3 isoform X1 | XP_005256484.1:p.Glu142= | XP_005256484.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X7 | XP_005256486.1:p.Glu142= | XP_005256486.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X5 | XP_005256485.1:p.Glu142= | XP_005256485.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X38 | XP_005256488.1:p.Glu142= | XP_005256488.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X2 | XP_006721486.1:p.Glu142= | XP_006721486.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X3 | XP_006721487.1:p.Glu142= | XP_006721487.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform 2 | NP_005843.2:p.Glu83= | NP_005843.2:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X22 | XP_006721491.1:p.Glu142= | XP_006721491.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X17 | XP_016879556.1:p.Glu72= | XP_016879556.1:p.Glu72Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform 1 | NP_001005273.1:p.Glu83= | NP_001005273.1:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform 3 | NP_001005271.2:p.Glu142= | NP_001005271.2:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X16 | XP_016879555.2:p.Glu73= | XP_016879555.2:p.Glu73Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X9 | XP_016879552.1:p.Glu83= | XP_016879552.1:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X19 | XP_016879557.1:p.Glu63= | XP_016879557.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X10 | XP_016879553.1:p.Glu142= | XP_016879553.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X14 | XP_016879554.1:p.Glu142= | XP_016879554.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X11 | XP_047291149.1:p.Glu83= | XP_047291149.1:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X12 | XP_047291150.1:p.Glu83= | XP_047291150.1:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X13 | XP_047291151.1:p.Glu83= | XP_047291151.1:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X4 | XP_047291146.1:p.Glu142= | XP_047291146.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X24 | XP_047291159.1:p.Glu83= | XP_047291159.1:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X26 | XP_047291161.1:p.Glu83= | XP_047291161.1:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X32 | XP_047291167.1:p.Glu63= | XP_047291167.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X8 | XP_047291148.1:p.Glu142= | XP_047291148.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X17 | XP_047291153.1:p.Glu72= | XP_047291153.1:p.Glu72Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X19 | XP_047291155.1:p.Glu63= | XP_047291155.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X20 | XP_047291156.1:p.Glu63= | XP_047291156.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X21 | XP_047291157.1:p.Glu63= | XP_047291157.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X25 | XP_047291160.1:p.Glu63= | XP_047291160.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X31 | XP_047291166.1:p.Glu63= | XP_047291166.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X6 | XP_047291147.1:p.Glu142= | XP_047291147.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X30 | XP_047291165.1:p.Glu63= | XP_047291165.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X33 | XP_047291168.1:p.Glu83= | XP_047291168.1:p.Glu83Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X23 | XP_047291158.1:p.Glu142= | XP_047291158.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X15 | XP_047291152.1:p.Glu142= | XP_047291152.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X18 | XP_047291154.1:p.Glu142= | XP_047291154.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X36 | XP_047291171.1:p.Glu63= | XP_047291171.1:p.Glu63Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X27 | XP_047291162.1:p.Glu142= | XP_047291162.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X28 | XP_047291163.1:p.Glu142= | XP_047291163.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X29 | XP_047291164.1:p.Glu142= | XP_047291164.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X34 | XP_047291169.1:p.Glu142= | XP_047291169.1:p.Glu142Lys |
| chromodomain-helicase-DNA-binding protein 3 isoform X35 | XP_047291170.1:p.Glu142= | XP_047291170.1:p.Glu142Lys |
Help
Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.
2 SubSNP,
2 Frequency
submissions
| No | Submitter | Submission ID | Date (Build) |
|---|---|---|---|
| 1 | GNOMAD | ss2742420937 | Nov 08, 2017 (151) |
| 2 | GNOMAD | ss4307592248 | Apr 26, 2021 (155) |
| 3 | gnomAD - Genomes | NC_000017.11 - 7890604 | Apr 26, 2021 (155) |
| 4 | gnomAD - Exomes | NC_000017.10 - 7793922 | Jul 13, 2019 (153) |
Help
History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).
Help
Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.
No publications for rs1489471187
Help
The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.
Genome context:
Select flank length:
Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.