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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1488285678

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr1:31756236 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
G>A
Variation Type
SNV Single Nucleotide Variation
Frequency
A=0.000004 (1/246118, GnomAD_exome)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
ADGRB2 : Missense Variant
Publications
0 citations
Genomic View
See rs on genome
Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
gnomAD - Exomes Global Study-wide 246118 G=0.999996 A=0.000004
gnomAD - Exomes European Sub 130940 G=1.000000 A=0.000000
gnomAD - Exomes Asian Sub 48870 G=1.00000 A=0.00000
gnomAD - Exomes American Sub 34530 G=0.99997 A=0.00003
gnomAD - Exomes African Sub 15778 G=1.00000 A=0.00000
gnomAD - Exomes Ashkenazi Jewish Sub 9956 G=1.0000 A=0.0000
gnomAD - Exomes Other Sub 6044 G=1.0000 A=0.0000
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 1 NC_000001.11:g.31756236G>A
GRCh37.p13 chr 1 NC_000001.10:g.32221837G>A
Gene: ADGRB2, adhesion G protein-coupled receptor B2 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
ADGRB2 transcript variant 1 NM_001294335.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform 1 preproprotein NP_001281264.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant 2 NM_001294336.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform 2 preproprotein NP_001281265.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant 3 NM_001364857.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform 3 preproprotein NP_001351786.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X28 XM_011541858.3:c.-72+7648…

XM_011541858.3:c.-72+7648C>T

N/A Intron Variant
ADGRB2 transcript variant X1 XM_047426173.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X1 XP_047282129.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X2 XM_017001899.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X1 XP_016857388.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X3 XM_017001900.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X2 XP_016857389.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X4 XM_024448673.2:c.565C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X3 XP_024304441.1:p.Leu189Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X5 XM_017001901.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X4 XP_016857390.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X6 XM_017001902.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X5 XP_016857391.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X7 XM_017001903.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X6 XP_016857392.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X8 XM_047426178.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X7 XP_047282134.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X9 XM_017001905.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X8 XP_016857394.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X10 XM_017001906.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X9 XP_016857395.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X11 XM_047426179.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X10 XP_047282135.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X12 XM_047426180.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X11 XP_047282136.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X13 XM_047426181.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X11 XP_047282137.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X14 XM_017001908.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X12 XP_016857397.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X15 XM_047426182.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X13 XP_047282138.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X16 XM_017001909.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X14 XP_016857398.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X17 XM_047426183.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X15 XP_047282139.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X18 XM_047426184.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X16 XP_047282140.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X19 XM_047426185.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X17 XP_047282141.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X20 XM_047426186.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X18 XP_047282142.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X21 XM_017001910.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X19 XP_016857399.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X22 XM_047426187.1:c.565C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X20 XP_047282143.1:p.Leu189Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X23 XM_017001911.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X21 XP_016857400.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X24 XM_017001912.2:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X22 XP_016857401.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X25 XM_047426188.1:c.565C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X23 XP_047282144.1:p.Leu189Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X26 XM_047426189.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X24 XP_047282145.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X27 XM_047426190.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X25 XP_047282146.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
ADGRB2 transcript variant X29 XM_047426191.1:c.601C>T L [CTC] > F [TTC] Coding Sequence Variant
adhesion G protein-coupled receptor B2 isoform X27 XP_047282147.1:p.Leu201Phe L (Leu) > F (Phe) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement G= A
GRCh38.p14 chr 1 NC_000001.11:g.31756236= NC_000001.11:g.31756236G>A
GRCh37.p13 chr 1 NC_000001.10:g.32221837= NC_000001.10:g.32221837G>A
ADGRB2 transcript variant X2 XM_017001899.2:c.601= XM_017001899.2:c.601C>T
ADGRB2 transcript variant X1 XM_017001899.1:c.601= XM_017001899.1:c.601C>T
ADGRB2 transcript variant 3 NM_001364857.2:c.601= NM_001364857.2:c.601C>T
ADGRB2 transcript variant 3 NM_001364857.1:c.601= NM_001364857.1:c.601C>T
ADGRB2 transcript variant 1 NM_001294335.2:c.601= NM_001294335.2:c.601C>T
ADGRB2 transcript variant 1 NM_001294335.1:c.601= NM_001294335.1:c.601C>T
ADGRB2 transcript variant 2 NM_001294336.2:c.601= NM_001294336.2:c.601C>T
ADGRB2 transcript variant 2 NM_001294336.1:c.601= NM_001294336.1:c.601C>T
ADGRB2 transcript variant X3 XM_017001900.2:c.601= XM_017001900.2:c.601C>T
ADGRB2 transcript variant X3 XM_017001900.1:c.601= XM_017001900.1:c.601C>T
ADGRB2 transcript variant X4 XM_024448673.2:c.565= XM_024448673.2:c.565C>T
ADGRB2 transcript variant X5 XM_024448673.1:c.565= XM_024448673.1:c.565C>T
ADGRB2 transcript variant X5 XM_017001901.2:c.601= XM_017001901.2:c.601C>T
ADGRB2 transcript variant X6 XM_017001901.1:c.601= XM_017001901.1:c.601C>T
ADGRB2 transcript variant X6 XM_017001902.2:c.601= XM_017001902.2:c.601C>T
ADGRB2 transcript variant X7 XM_017001902.1:c.601= XM_017001902.1:c.601C>T
ADGRB2 transcript variant X7 XM_017001903.2:c.601= XM_017001903.2:c.601C>T
ADGRB2 transcript variant X8 XM_017001903.1:c.601= XM_017001903.1:c.601C>T
BAI2 transcript NM_001703.2:c.601= NM_001703.2:c.601C>T
ADGRB2 transcript variant X9 XM_017001905.2:c.601= XM_017001905.2:c.601C>T
ADGRB2 transcript variant X10 XM_017001905.1:c.601= XM_017001905.1:c.601C>T
ADGRB2 transcript variant X10 XM_017001906.2:c.601= XM_017001906.2:c.601C>T
ADGRB2 transcript variant X11 XM_017001906.1:c.601= XM_017001906.1:c.601C>T
ADGRB2 transcript variant X14 XM_017001908.2:c.601= XM_017001908.2:c.601C>T
ADGRB2 transcript variant X13 XM_017001908.1:c.601= XM_017001908.1:c.601C>T
ADGRB2 transcript variant X16 XM_017001909.2:c.601= XM_017001909.2:c.601C>T
ADGRB2 transcript variant X14 XM_017001909.1:c.601= XM_017001909.1:c.601C>T
ADGRB2 transcript variant X21 XM_017001910.2:c.601= XM_017001910.2:c.601C>T
ADGRB2 transcript variant X15 XM_017001910.1:c.601= XM_017001910.1:c.601C>T
ADGRB2 transcript variant X23 XM_017001911.2:c.601= XM_017001911.2:c.601C>T
ADGRB2 transcript variant X16 XM_017001911.1:c.601= XM_017001911.1:c.601C>T
ADGRB2 transcript variant X24 XM_017001912.2:c.601= XM_017001912.2:c.601C>T
ADGRB2 transcript variant X17 XM_017001912.1:c.601= XM_017001912.1:c.601C>T
ADGRB2 transcript variant X25 XM_047426188.1:c.565= XM_047426188.1:c.565C>T
ADGRB2 transcript variant X8 XM_047426178.1:c.601= XM_047426178.1:c.601C>T
ADGRB2 transcript variant X1 XM_047426173.1:c.601= XM_047426173.1:c.601C>T
ADGRB2 transcript variant X12 XM_047426180.1:c.601= XM_047426180.1:c.601C>T
ADGRB2 transcript variant X20 XM_047426186.1:c.601= XM_047426186.1:c.601C>T
ADGRB2 transcript variant X13 XM_047426181.1:c.601= XM_047426181.1:c.601C>T
ADGRB2 transcript variant X11 XM_047426179.1:c.601= XM_047426179.1:c.601C>T
ADGRB2 transcript variant X15 XM_047426182.1:c.601= XM_047426182.1:c.601C>T
ADGRB2 transcript variant X18 XM_047426184.1:c.601= XM_047426184.1:c.601C>T
ADGRB2 transcript variant X17 XM_047426183.1:c.601= XM_047426183.1:c.601C>T
ADGRB2 transcript variant X19 XM_047426185.1:c.601= XM_047426185.1:c.601C>T
ADGRB2 transcript variant X22 XM_047426187.1:c.565= XM_047426187.1:c.565C>T
ADGRB2 transcript variant X26 XM_047426189.1:c.601= XM_047426189.1:c.601C>T
ADGRB2 transcript variant X27 XM_047426190.1:c.601= XM_047426190.1:c.601C>T
ADGRB2 transcript variant X29 XM_047426191.1:c.601= XM_047426191.1:c.601C>T
adhesion G protein-coupled receptor B2 isoform X1 XP_016857388.1:p.Leu201= XP_016857388.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform 3 preproprotein NP_001351786.1:p.Leu201= NP_001351786.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform 1 preproprotein NP_001281264.1:p.Leu201= NP_001281264.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform 2 preproprotein NP_001281265.1:p.Leu201= NP_001281265.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X2 XP_016857389.1:p.Leu201= XP_016857389.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X3 XP_024304441.1:p.Leu189= XP_024304441.1:p.Leu189Phe
adhesion G protein-coupled receptor B2 isoform X4 XP_016857390.1:p.Leu201= XP_016857390.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X5 XP_016857391.1:p.Leu201= XP_016857391.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X6 XP_016857392.1:p.Leu201= XP_016857392.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X8 XP_016857394.1:p.Leu201= XP_016857394.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X9 XP_016857395.1:p.Leu201= XP_016857395.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X12 XP_016857397.1:p.Leu201= XP_016857397.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X14 XP_016857398.1:p.Leu201= XP_016857398.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X19 XP_016857399.1:p.Leu201= XP_016857399.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X21 XP_016857400.1:p.Leu201= XP_016857400.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X22 XP_016857401.1:p.Leu201= XP_016857401.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X23 XP_047282144.1:p.Leu189= XP_047282144.1:p.Leu189Phe
adhesion G protein-coupled receptor B2 isoform X7 XP_047282134.1:p.Leu201= XP_047282134.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X1 XP_047282129.1:p.Leu201= XP_047282129.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X11 XP_047282136.1:p.Leu201= XP_047282136.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X18 XP_047282142.1:p.Leu201= XP_047282142.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X11 XP_047282137.1:p.Leu201= XP_047282137.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X10 XP_047282135.1:p.Leu201= XP_047282135.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X13 XP_047282138.1:p.Leu201= XP_047282138.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X16 XP_047282140.1:p.Leu201= XP_047282140.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X15 XP_047282139.1:p.Leu201= XP_047282139.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X17 XP_047282141.1:p.Leu201= XP_047282141.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X20 XP_047282143.1:p.Leu189= XP_047282143.1:p.Leu189Phe
adhesion G protein-coupled receptor B2 isoform X24 XP_047282145.1:p.Leu201= XP_047282145.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X25 XP_047282146.1:p.Leu201= XP_047282146.1:p.Leu201Phe
adhesion G protein-coupled receptor B2 isoform X27 XP_047282147.1:p.Leu201= XP_047282147.1:p.Leu201Phe
brain-specific angiogenesis inhibitor 2 precursor NP_001694.2:p.Leu201= NP_001694.2:p.Leu201Phe
ADGRB2 transcript variant X28 XM_011541858.3:c.-72+7648= XM_011541858.3:c.-72+7648C>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

1 SubSNP, 1 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss2731325531 Nov 08, 2017 (151)
2 gnomAD - Exomes NC_000001.10 - 32221837 Jul 12, 2019 (153)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
340178, ss2731325531 NC_000001.10:32221836:G:A NC_000001.11:31756235:G:A (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1488285678

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d