dbSNP Short Genetic Variations
Welcome to the Reference SNP (rs) Report
All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.
Reference SNP (rs) Report
This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.
rs1458640141
Current Build 156
Released September 21, 2022
- Organism
- Homo sapiens
- Position
-
chr9:127212164 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
- Alleles
- C>T
- Variation Type
- SNV Single Nucleotide Variation
- Frequency
-
T=0.000004 (1/264690, TOPMED)T=0.000007 (1/140258, GnomAD)T=0.00000 (0/14050, ALFA)
- Clinical Significance
- Not Reported in ClinVar
- Gene : Consequence
- RALGPS1 : Synonymous Variant
- Publications
- 0 citations
- Genomic View
- See rs on genome
ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.
Release Version: 20231103111315
| Population | Group | Sample Size | Ref Allele | Alt Allele | Ref HMOZ | Alt HMOZ | HTRZ | HWEP |
|---|---|---|---|---|---|---|---|---|
| Total | Global | 14050 | C=1.00000 | T=0.00000 | 1.0 | 0.0 | 0.0 | N/A |
| European | Sub | 9690 | C=1.0000 | T=0.0000 | 1.0 | 0.0 | 0.0 | N/A |
| African | Sub | 2898 | C=1.0000 | T=0.0000 | 1.0 | 0.0 | 0.0 | N/A |
| African Others | Sub | 114 | C=1.000 | T=0.000 | 1.0 | 0.0 | 0.0 | N/A |
| African American | Sub | 2784 | C=1.0000 | T=0.0000 | 1.0 | 0.0 | 0.0 | N/A |
| Asian | Sub | 112 | C=1.000 | T=0.000 | 1.0 | 0.0 | 0.0 | N/A |
| East Asian | Sub | 86 | C=1.00 | T=0.00 | 1.0 | 0.0 | 0.0 | N/A |
| Other Asian | Sub | 26 | C=1.00 | T=0.00 | 1.0 | 0.0 | 0.0 | N/A |
| Latin American 1 | Sub | 146 | C=1.000 | T=0.000 | 1.0 | 0.0 | 0.0 | N/A |
| Latin American 2 | Sub | 610 | C=1.000 | T=0.000 | 1.0 | 0.0 | 0.0 | N/A |
| South Asian | Sub | 98 | C=1.00 | T=0.00 | 1.0 | 0.0 | 0.0 | N/A |
| Other | Sub | 496 | C=1.000 | T=0.000 | 1.0 | 0.0 | 0.0 | N/A |
Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").
Download| Study | Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| TopMed | Global | Study-wide | 264690 | C=0.999996 | T=0.000004 |
| gnomAD - Genomes | Global | Study-wide | 140258 | C=0.999993 | T=0.000007 |
| gnomAD - Genomes | European | Sub | 75942 | C=1.00000 | T=0.00000 |
| gnomAD - Genomes | African | Sub | 42044 | C=0.99998 | T=0.00002 |
| gnomAD - Genomes | American | Sub | 13664 | C=1.00000 | T=0.00000 |
| gnomAD - Genomes | Ashkenazi Jewish | Sub | 3322 | C=1.0000 | T=0.0000 |
| gnomAD - Genomes | East Asian | Sub | 3134 | C=1.0000 | T=0.0000 |
| gnomAD - Genomes | Other | Sub | 2152 | C=1.0000 | T=0.0000 |
| Allele Frequency Aggregator | Total | Global | 14050 | C=1.00000 | T=0.00000 |
| Allele Frequency Aggregator | European | Sub | 9690 | C=1.0000 | T=0.0000 |
| Allele Frequency Aggregator | African | Sub | 2898 | C=1.0000 | T=0.0000 |
| Allele Frequency Aggregator | Latin American 2 | Sub | 610 | C=1.000 | T=0.000 |
| Allele Frequency Aggregator | Other | Sub | 496 | C=1.000 | T=0.000 |
| Allele Frequency Aggregator | Latin American 1 | Sub | 146 | C=1.000 | T=0.000 |
| Allele Frequency Aggregator | Asian | Sub | 112 | C=1.000 | T=0.000 |
| Allele Frequency Aggregator | South Asian | Sub | 98 | C=1.00 | T=0.00 |
Help
Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.
Genomic Placements
| Sequence name | Change |
|---|---|
| GRCh38.p14 chr 9 | NC_000009.12:g.127212164C>T |
| GRCh37.p13 chr 9 | NC_000009.11:g.129974443C>T |
Gene: RALGPS1, Ral GEF with PH domain and SH3 binding motif 1
(plus strand)
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| RALGPS1 transcript variant 4 | NM_001190730.2:c. | N/A | Genic Downstream Transcript Variant |
| RALGPS1 transcript variant 11 | NM_001366399.1:c. | N/A | Genic Downstream Transcript Variant |
| RALGPS1 transcript variant 3 | NM_001190728.1:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 3 | NP_001177657.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 12 | NM_001366400.1:c.1281C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 1 | NP_001353329.1:p.Asn427= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 13 | NM_001366401.1:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 11 | NP_001353330.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 1 | NM_014636.3:c.1281C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 1 | NP_055451.1:p.Asn427= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 10 | NM_001322325.2:c.1365C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 9 | NP_001309254.1:p.Asn455= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 6 | NM_001322321.2:c.1362C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 5 | NP_001309250.1:p.Asn454= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 5 | NM_001322320.2:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 2 | NP_001309249.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 7 | NM_001322322.2:c.1362C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 6 | NP_001309251.1:p.Asn454= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 9 | NM_001322324.2:c.1152C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 8 | NP_001309253.1:p.Asn384= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 8 | NM_001322323.2:c.1065C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 7 | NP_001309252.1:p.Asn355= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant 2 | NM_001190729.2:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 2 | NP_001177658.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X9 | XM_017015346.1:c.1281C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X7 | XP_016870835.1:p.Asn427= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X1 | XM_047424113.1:c.1365C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1 | XP_047280069.1:p.Asn455= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X2 | XM_047424114.1:c.1362C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X2 | XP_047280070.1:p.Asn454= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X3 | XM_047424115.1:c.1362C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X2 | XP_047280071.1:p.Asn454= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X4 | XM_047424116.1:c.1365C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X3 | XP_047280072.1:p.Asn455= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X5 | XM_047424117.1:c.1314C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X4 | XP_047280073.1:p.Asn438= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X6 | XM_047424118.1:c.1362C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X5 | XP_047280074.1:p.Asn454= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X7 | XM_011519233.2:c.1365C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X6 | XP_011517535.1:p.Asn455= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X8 | XM_047424119.1:c.1365C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X6 | XP_047280075.1:p.Asn455= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X10 | XM_047424120.1:c.1365C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X8 | XP_047280076.1:p.Asn455= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X11 | XM_047424121.1:c.1365C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X8 | XP_047280077.1:p.Asn455= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X12 | XM_047424122.1:c.1275C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X9 | XP_047280078.1:p.Asn425= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X13 | XM_047424123.1:c.1281C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X10 | XP_047280079.1:p.Asn427= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X14 | XM_047424124.1:c.1314C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X11 | XP_047280080.1:p.Asn438= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X15 | XM_047424125.1:c.1275C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X12 | XP_047280081.1:p.Asn425= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X16 | XM_047424126.1:c.1224C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X13 | XP_047280082.1:p.Asn408= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X17 | XM_047424127.1:c.1275C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X14 | XP_047280083.1:p.Asn425= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X18 | XM_047424128.1:c.1272C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X15 | XP_047280084.1:p.Asn424= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X19 | XM_047424129.1:c.1275C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X16 | XP_047280085.1:p.Asn425= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X20 | XM_047424130.1:c.1221C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X17 | XP_047280086.1:p.Asn407= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X21 | XM_047424131.1:c.1152C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X18 | XP_047280087.1:p.Asn384= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X22 | XM_047424132.1:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X19 | XP_047280088.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X23 | XM_047424133.1:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X19 | XP_047280089.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X24 | XM_047424134.1:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X20 | XP_047280090.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X25 | XM_047424135.1:c.1182C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X21 | XP_047280091.1:p.Asn394= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X26 | XM_047424136.1:c.1104C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X22 | XP_047280092.1:p.Asn368= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X27 | XM_047424137.1:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X23 | XP_047280093.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X28 | XM_047424138.1:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X23 | XP_047280094.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X29 | XM_047424139.1:c.1155C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X24 | XP_047280095.1:p.Asn385= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X30 | XM_047424140.1:c.1131C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X25 | XP_047280096.1:p.Asn377= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X31 | XM_047424141.1:c.1062C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X26 | XP_047280097.1:p.Asn354= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X32 | XM_047424142.1:c.1062C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X26 | XP_047280098.1:p.Asn354= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X33 | XM_047424143.1:c.1065C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X27 | XP_047280099.1:p.Asn355= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X34 | XM_047424144.1:c.1104C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X28 | XP_047280100.1:p.Asn368= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X35 | XM_047424145.1:c.1014C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X29 | XP_047280101.1:p.Asn338= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X36 | XM_047424146.1:c.1065C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X30 | XP_047280102.1:p.Asn355= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X37 | XM_047424147.1:c.1065C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X30 | XP_047280103.1:p.Asn355= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X38 | XM_047424148.1:c.1062C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X31 | XP_047280104.1:p.Asn354= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X39 | XM_047424149.1:c.972C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X32 | XP_047280105.1:p.Asn324= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X40 | XM_047424150.1:c.1065C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X33 | XP_047280106.1:p.Asn355= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X41 | XM_047424151.1:c.972C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X34 | XP_047280107.1:p.Asn324= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X42 | XM_047424152.1:c.972C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X35 | XP_047280108.1:p.Asn324= | N (Asn) > N (Asn) | Synonymous Variant |
| RALGPS1 transcript variant X43 | XM_047424153.1:c.921C>T | N [AAC] > N [AAT] | Coding Sequence Variant |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X36 | XP_047280109.1:p.Asn307= | N (Asn) > N (Asn) | Synonymous Variant |
Help
Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.
Not Reported in ClinVar
Help
Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".
| Placement | C= | T |
|---|---|---|
| GRCh38.p14 chr 9 | NC_000009.12:g.127212164= | NC_000009.12:g.127212164C>T |
| GRCh37.p13 chr 9 | NC_000009.11:g.129974443= | NC_000009.11:g.129974443C>T |
| RALGPS1 transcript variant 1 | NM_014636.3:c.1281= | NM_014636.3:c.1281C>T |
| RALGPS1 transcript variant 1 | NM_014636.2:c.1281= | NM_014636.2:c.1281C>T |
| RALGPS1 transcript variant X7 | XM_011519233.2:c.1365= | XM_011519233.2:c.1365C>T |
| RALGPS1 transcript variant X14 | XM_011519233.1:c.1365= | XM_011519233.1:c.1365C>T |
| RALGPS1 transcript variant 6 | NM_001322321.2:c.1362= | NM_001322321.2:c.1362C>T |
| RALGPS1 transcript variant 6 | NM_001322321.1:c.1362= | NM_001322321.1:c.1362C>T |
| RALGPS1 transcript variant 7 | NM_001322322.2:c.1362= | NM_001322322.2:c.1362C>T |
| RALGPS1 transcript variant 7 | NM_001322322.1:c.1362= | NM_001322322.1:c.1362C>T |
| RALGPS1 transcript variant 9 | NM_001322324.2:c.1152= | NM_001322324.2:c.1152C>T |
| RALGPS1 transcript variant 9 | NM_001322324.1:c.1152= | NM_001322324.1:c.1152C>T |
| RALGPS1 transcript variant 10 | NM_001322325.2:c.1365= | NM_001322325.2:c.1365C>T |
| RALGPS1 transcript variant 10 | NM_001322325.1:c.1365= | NM_001322325.1:c.1365C>T |
| RALGPS1 transcript variant 2 | NM_001190729.2:c.1155= | NM_001190729.2:c.1155C>T |
| RALGPS1 transcript variant 2 | NM_001190729.1:c.1155= | NM_001190729.1:c.1155C>T |
| RALGPS1 transcript variant 5 | NM_001322320.2:c.1155= | NM_001322320.2:c.1155C>T |
| RALGPS1 transcript variant 5 | NM_001322320.1:c.1155= | NM_001322320.1:c.1155C>T |
| RALGPS1 transcript variant 8 | NM_001322323.2:c.1065= | NM_001322323.2:c.1065C>T |
| RALGPS1 transcript variant 8 | NM_001322323.1:c.1065= | NM_001322323.1:c.1065C>T |
| RALGPS1 transcript variant X6 | XM_047424118.1:c.1362= | XM_047424118.1:c.1362C>T |
| RALGPS1 transcript variant X13 | XM_047424123.1:c.1281= | XM_047424123.1:c.1281C>T |
| RALGPS1 transcript variant X15 | XM_047424125.1:c.1275= | XM_047424125.1:c.1275C>T |
| RALGPS1 transcript variant X24 | XM_047424134.1:c.1155= | XM_047424134.1:c.1155C>T |
| RALGPS1 transcript variant X10 | XM_047424120.1:c.1365= | XM_047424120.1:c.1365C>T |
| RALGPS1 transcript variant X14 | XM_047424124.1:c.1314= | XM_047424124.1:c.1314C>T |
| RALGPS1 transcript variant X17 | XM_047424127.1:c.1275= | XM_047424127.1:c.1275C>T |
| RALGPS1 transcript variant X18 | XM_047424128.1:c.1272= | XM_047424128.1:c.1272C>T |
| RALGPS1 transcript variant X19 | XM_047424129.1:c.1275= | XM_047424129.1:c.1275C>T |
| RALGPS1 transcript variant X20 | XM_047424130.1:c.1221= | XM_047424130.1:c.1221C>T |
| RALGPS1 transcript variant X25 | XM_047424135.1:c.1182= | XM_047424135.1:c.1182C>T |
| RALGPS1 transcript variant X8 | XM_047424119.1:c.1365= | XM_047424119.1:c.1365C>T |
| RALGPS1 transcript variant X28 | XM_047424138.1:c.1155= | XM_047424138.1:c.1155C>T |
| RALGPS1 transcript variant X11 | XM_047424121.1:c.1365= | XM_047424121.1:c.1365C>T |
| RALGPS1 transcript variant X29 | XM_047424139.1:c.1155= | XM_047424139.1:c.1155C>T |
| RALGPS1 transcript variant 12 | NM_001366400.1:c.1281= | NM_001366400.1:c.1281C>T |
| RALGPS1 transcript variant X34 | XM_047424144.1:c.1104= | XM_047424144.1:c.1104C>T |
| RALGPS1 transcript variant X36 | XM_047424146.1:c.1065= | XM_047424146.1:c.1065C>T |
| RALGPS1 transcript variant X38 | XM_047424148.1:c.1062= | XM_047424148.1:c.1062C>T |
| RALGPS1 transcript variant X40 | XM_047424150.1:c.1065= | XM_047424150.1:c.1065C>T |
| RALGPS1 transcript variant X9 | XM_017015346.1:c.1281= | XM_017015346.1:c.1281C>T |
| RALGPS1 transcript variant X42 | XM_047424152.1:c.972= | XM_047424152.1:c.972C>T |
| RALGPS1 transcript variant X27 | XM_047424137.1:c.1155= | XM_047424137.1:c.1155C>T |
| RALGPS1 transcript variant X30 | XM_047424140.1:c.1131= | XM_047424140.1:c.1131C>T |
| RALGPS1 transcript variant 13 | NM_001366401.1:c.1155= | NM_001366401.1:c.1155C>T |
| RALGPS1 transcript variant X43 | XM_047424153.1:c.921= | XM_047424153.1:c.921C>T |
| RALGPS1 transcript variant X37 | XM_047424147.1:c.1065= | XM_047424147.1:c.1065C>T |
| RALGPS1 transcript variant X39 | XM_047424149.1:c.972= | XM_047424149.1:c.972C>T |
| RALGPS1 transcript variant X2 | XM_047424114.1:c.1362= | XM_047424114.1:c.1362C>T |
| RALGPS1 transcript variant X4 | XM_047424116.1:c.1365= | XM_047424116.1:c.1365C>T |
| RALGPS1 transcript variant X5 | XM_047424117.1:c.1314= | XM_047424117.1:c.1314C>T |
| RALGPS1 transcript variant X12 | XM_047424122.1:c.1275= | XM_047424122.1:c.1275C>T |
| RALGPS1 transcript variant X16 | XM_047424126.1:c.1224= | XM_047424126.1:c.1224C>T |
| RALGPS1 transcript variant X1 | XM_047424113.1:c.1365= | XM_047424113.1:c.1365C>T |
| RALGPS1 transcript variant X3 | XM_047424115.1:c.1362= | XM_047424115.1:c.1362C>T |
| RALGPS1 transcript variant X21 | XM_047424131.1:c.1152= | XM_047424131.1:c.1152C>T |
| RALGPS1 transcript variant X22 | XM_047424132.1:c.1155= | XM_047424132.1:c.1155C>T |
| RALGPS1 transcript variant X26 | XM_047424136.1:c.1104= | XM_047424136.1:c.1104C>T |
| RALGPS1 transcript variant X32 | XM_047424142.1:c.1062= | XM_047424142.1:c.1062C>T |
| RALGPS1 transcript variant X33 | XM_047424143.1:c.1065= | XM_047424143.1:c.1065C>T |
| RALGPS1 transcript variant X35 | XM_047424145.1:c.1014= | XM_047424145.1:c.1014C>T |
| RALGPS1 transcript variant X41 | XM_047424151.1:c.972= | XM_047424151.1:c.972C>T |
| RALGPS1 transcript variant X23 | XM_047424133.1:c.1155= | XM_047424133.1:c.1155C>T |
| RALGPS1 transcript variant X31 | XM_047424141.1:c.1062= | XM_047424141.1:c.1062C>T |
| RALGPS1 transcript variant 3 | NM_001190728.1:c.1155= | NM_001190728.1:c.1155C>T |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 1 | NP_055451.1:p.Asn427= | NP_055451.1:p.Asn427= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X6 | XP_011517535.1:p.Asn455= | XP_011517535.1:p.Asn455= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 5 | NP_001309250.1:p.Asn454= | NP_001309250.1:p.Asn454= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 6 | NP_001309251.1:p.Asn454= | NP_001309251.1:p.Asn454= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 8 | NP_001309253.1:p.Asn384= | NP_001309253.1:p.Asn384= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 9 | NP_001309254.1:p.Asn455= | NP_001309254.1:p.Asn455= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 2 | NP_001177658.1:p.Asn385= | NP_001177658.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 2 | NP_001309249.1:p.Asn385= | NP_001309249.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 7 | NP_001309252.1:p.Asn355= | NP_001309252.1:p.Asn355= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X5 | XP_047280074.1:p.Asn454= | XP_047280074.1:p.Asn454= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X10 | XP_047280079.1:p.Asn427= | XP_047280079.1:p.Asn427= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X12 | XP_047280081.1:p.Asn425= | XP_047280081.1:p.Asn425= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X20 | XP_047280090.1:p.Asn385= | XP_047280090.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X8 | XP_047280076.1:p.Asn455= | XP_047280076.1:p.Asn455= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X11 | XP_047280080.1:p.Asn438= | XP_047280080.1:p.Asn438= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X14 | XP_047280083.1:p.Asn425= | XP_047280083.1:p.Asn425= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X15 | XP_047280084.1:p.Asn424= | XP_047280084.1:p.Asn424= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X16 | XP_047280085.1:p.Asn425= | XP_047280085.1:p.Asn425= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X17 | XP_047280086.1:p.Asn407= | XP_047280086.1:p.Asn407= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X21 | XP_047280091.1:p.Asn394= | XP_047280091.1:p.Asn394= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X6 | XP_047280075.1:p.Asn455= | XP_047280075.1:p.Asn455= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X23 | XP_047280094.1:p.Asn385= | XP_047280094.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X8 | XP_047280077.1:p.Asn455= | XP_047280077.1:p.Asn455= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X24 | XP_047280095.1:p.Asn385= | XP_047280095.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 1 | NP_001353329.1:p.Asn427= | NP_001353329.1:p.Asn427= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X28 | XP_047280100.1:p.Asn368= | XP_047280100.1:p.Asn368= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X30 | XP_047280102.1:p.Asn355= | XP_047280102.1:p.Asn355= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X31 | XP_047280104.1:p.Asn354= | XP_047280104.1:p.Asn354= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X33 | XP_047280106.1:p.Asn355= | XP_047280106.1:p.Asn355= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X7 | XP_016870835.1:p.Asn427= | XP_016870835.1:p.Asn427= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X35 | XP_047280108.1:p.Asn324= | XP_047280108.1:p.Asn324= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X23 | XP_047280093.1:p.Asn385= | XP_047280093.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X25 | XP_047280096.1:p.Asn377= | XP_047280096.1:p.Asn377= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 11 | NP_001353330.1:p.Asn385= | NP_001353330.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X36 | XP_047280109.1:p.Asn307= | XP_047280109.1:p.Asn307= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X30 | XP_047280103.1:p.Asn355= | XP_047280103.1:p.Asn355= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X32 | XP_047280105.1:p.Asn324= | XP_047280105.1:p.Asn324= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X2 | XP_047280070.1:p.Asn454= | XP_047280070.1:p.Asn454= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X3 | XP_047280072.1:p.Asn455= | XP_047280072.1:p.Asn455= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X4 | XP_047280073.1:p.Asn438= | XP_047280073.1:p.Asn438= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X9 | XP_047280078.1:p.Asn425= | XP_047280078.1:p.Asn425= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X13 | XP_047280082.1:p.Asn408= | XP_047280082.1:p.Asn408= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1 | XP_047280069.1:p.Asn455= | XP_047280069.1:p.Asn455= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X2 | XP_047280071.1:p.Asn454= | XP_047280071.1:p.Asn454= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X18 | XP_047280087.1:p.Asn384= | XP_047280087.1:p.Asn384= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X19 | XP_047280088.1:p.Asn385= | XP_047280088.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X22 | XP_047280092.1:p.Asn368= | XP_047280092.1:p.Asn368= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X26 | XP_047280098.1:p.Asn354= | XP_047280098.1:p.Asn354= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X27 | XP_047280099.1:p.Asn355= | XP_047280099.1:p.Asn355= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X29 | XP_047280101.1:p.Asn338= | XP_047280101.1:p.Asn338= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X34 | XP_047280107.1:p.Asn324= | XP_047280107.1:p.Asn324= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X19 | XP_047280089.1:p.Asn385= | XP_047280089.1:p.Asn385= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X26 | XP_047280097.1:p.Asn354= | XP_047280097.1:p.Asn354= |
| ras-specific guanine nucleotide-releasing factor RalGPS1 isoform 3 | NP_001177657.1:p.Asn385= | NP_001177657.1:p.Asn385= |
Help
Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.
3 SubSNP,
3 Frequency
submissions
| No | Submitter | Submission ID | Date (Build) |
|---|---|---|---|
| 1 | GNOMAD | ss2748269322 | Nov 08, 2017 (151) |
| 2 | GNOMAD | ss2883497233 | Nov 08, 2017 (151) |
| 3 | TOPMED | ss4836560560 | Apr 26, 2021 (155) |
| 4 | gnomAD - Genomes | NC_000009.12 - 127212164 | Apr 26, 2021 (155) |
| 5 | TopMed | NC_000009.12 - 127212164 | Apr 26, 2021 (155) |
| 6 | ALFA | NC_000009.12 - 127212164 | Apr 26, 2021 (155) |
Help
History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).
Help
Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.
No publications for rs1458640141
Help
The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.
Genome context:
Select flank length:
Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.