Name: rs1263494908
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1263494908

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr17:16127254-16127262 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delGTGT / delGT / dupGT
Variation Type: Indel Insertion and Deletion
Frequency: delGT=0.00078 (12/15380, ALFA)
delGT=0.008 (5/600, NorthernSweden)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: NCOR1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	15380	TGTGTGTGT=0.99922	TGTGT=0.00000, TGTGTGT=0.00078, TGTGTGTGTGT=0.00000	0.9987	0.00026	0.00104	32
European	Sub	11952	TGTGTGTGT=0.99900	TGTGT=0.00000, TGTGTGT=0.00100, TGTGTGTGTGT=0.00000	0.998327	0.000335	0.001339	32
African	Sub	2056	TGTGTGTGT=1.0000	TGTGT=0.0000, TGTGTGT=0.0000, TGTGTGTGTGT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	74	TGTGTGTGT=1.00	TGTGT=0.00, TGTGTGT=0.00, TGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
African American	Sub	1982	TGTGTGTGT=1.0000	TGTGT=0.0000, TGTGTGT=0.0000, TGTGTGTGTGT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	106	TGTGTGTGT=1.000	TGTGT=0.000, TGTGTGT=0.000, TGTGTGTGTGT=0.000	1.0	0.0	0.0	N/A
East Asian	Sub	82	TGTGTGTGT=1.00	TGTGT=0.00, TGTGTGT=0.00, TGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	24	TGTGTGTGT=1.00	TGTGT=0.00, TGTGTGT=0.00, TGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	140	TGTGTGTGT=1.000	TGTGT=0.000, TGTGTGT=0.000, TGTGTGTGTGT=0.000	1.0	0.0	0.0	N/A
Latin American 2	Sub	594	TGTGTGTGT=1.000	TGTGT=0.000, TGTGTGT=0.000, TGTGTGTGTGT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	92	TGTGTGTGT=1.00	TGTGT=0.00, TGTGTGT=0.00, TGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
Other	Sub	440	TGTGTGTGT=1.000	TGTGT=0.000, TGTGTGT=0.000, TGTGTGTGTGT=0.000	1.0	0.0	0.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	15380	(TG)₄T=0.99922	delGTGT=0.00000, delGT=0.00078, dupGT=0.00000
Allele Frequency Aggregator	European	Sub	11952	(TG)₄T=0.99900	delGTGT=0.00000, delGT=0.00100, dupGT=0.00000
Allele Frequency Aggregator	African	Sub	2056	(TG)₄T=1.0000	delGTGT=0.0000, delGT=0.0000, dupGT=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	594	(TG)₄T=1.000	delGTGT=0.000, delGT=0.000, dupGT=0.000
Allele Frequency Aggregator	Other	Sub	440	(TG)₄T=1.000	delGTGT=0.000, delGT=0.000, dupGT=0.000
Allele Frequency Aggregator	Latin American 1	Sub	140	(TG)₄T=1.000	delGTGT=0.000, delGT=0.000, dupGT=0.000
Allele Frequency Aggregator	Asian	Sub	106	(TG)₄T=1.000	delGTGT=0.000, delGT=0.000, dupGT=0.000
Allele Frequency Aggregator	South Asian	Sub	92	(TG)₄T=1.00	delGTGT=0.00, delGT=0.00, dupGT=0.00
Northern Sweden	ACPOP	Study-wide	600	(TG)₄T=0.992	delGT=0.008

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 17	NC_000017.11:g.16127255GT[2]
GRCh38.p14 chr 17	NC_000017.11:g.16127255GT[3]
GRCh38.p14 chr 17	NC_000017.11:g.16127255GT[5]
GRCh37.p13 chr 17	NC_000017.10:g.16030569GT[2]
GRCh37.p13 chr 17	NC_000017.10:g.16030569GT[3]
GRCh37.p13 chr 17	NC_000017.10:g.16030569GT[5]
NCOR1 RefSeqGene	NG_047111.1:g.94486CA[2]
NCOR1 RefSeqGene	NG_047111.1:g.94486CA[3]
NCOR1 RefSeqGene	NG_047111.1:g.94486CA[5]

Gene: NCOR1, nuclear receptor corepressor 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
NCOR1 transcript variant 2	NM_001190438.1:c.1183-105… NM_001190438.1:c.1183-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant 3	NM_001190440.1:c.1510-105… NM_001190440.1:c.1510-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant 1	NM_006311.4:c.1510-1055CA… NM_006311.4:c.1510-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X1	XM_005256866.6:c.1537-105… XM_005256866.6:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X5	XM_005256868.6:c.1537-105… XM_005256868.6:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X10	XM_005256871.6:c.1510-105… XM_005256871.6:c.1510-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X14	XM_005256872.6:c.1510-105… XM_005256872.6:c.1510-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X19	XM_005256873.6:c.1537-105… XM_005256873.6:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X21	XM_005256874.6:c.1537-105… XM_005256874.6:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X32	XM_005256875.5:c.1537-105… XM_005256875.5:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X2	XM_006721601.5:c.1537-105… XM_006721601.5:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X7	XM_006721602.5:c.1537-105… XM_006721602.5:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X17	XM_006721603.5:c.1537-105… XM_006721603.5:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X26	XM_006721604.5:c.1510-105… XM_006721604.5:c.1510-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X6	XM_011524084.4:c.1537-105… XM_011524084.4:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X36	XM_011524085.4:c.1537-105… XM_011524085.4:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X46	XM_011524086.4:c.1510-105… XM_011524086.4:c.1510-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X3	XM_017025396.3:c.1537-105… XM_017025396.3:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X4	XM_017025397.3:c.1537-105… XM_017025397.3:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X8	XM_017025400.3:c.1537-105… XM_017025400.3:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X9	XM_017025401.3:c.1537-105… XM_017025401.3:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X11	XM_017025403.3:c.1510-105… XM_017025403.3:c.1510-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X15	XM_017025409.3:c.1510-105… XM_017025409.3:c.1510-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X23	XM_017025415.3:c.1537-105… XM_017025415.3:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X30	XM_017025417.3:c.1537-105… XM_017025417.3:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X37	XM_017025418.3:c.1537-105… XM_017025418.3:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X44	XM_017025419.3:c.1537-105… XM_017025419.3:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X48	XM_017025420.3:c.1537-105… XM_017025420.3:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X12	XM_047437121.1:c.1510-105… XM_047437121.1:c.1510-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X13	XM_047437122.1:c.1510-105… XM_047437122.1:c.1510-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X16	XM_047437123.1:c.1510-105… XM_047437123.1:c.1510-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X18	XM_047437124.1:c.1537-105… XM_047437124.1:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X20	XM_047437125.1:c.1537-105… XM_047437125.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X22	XM_047437126.1:c.1537-105… XM_047437126.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X24	XM_047437127.1:c.1537-105… XM_047437127.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X25	XM_047437128.1:c.1510-105… XM_047437128.1:c.1510-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X27	XM_047437129.1:c.1537-105… XM_047437129.1:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X28	XM_047437130.1:c.1537-105… XM_047437130.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X29	XM_047437131.1:c.1537-105… XM_047437131.1:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X31	XM_047437132.1:c.1537-105… XM_047437132.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X33	XM_047437133.1:c.1510-105… XM_047437133.1:c.1510-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X34	XM_047437134.1:c.1537-105… XM_047437134.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X35	XM_047437135.1:c.1537-105… XM_047437135.1:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X38	XM_047437136.1:c.1537-105… XM_047437136.1:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X39	XM_047437137.1:c.1537-105… XM_047437137.1:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X40	XM_047437138.1:c.1537-105… XM_047437138.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X41	XM_047437139.1:c.1537-105… XM_047437139.1:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X42	XM_047437140.1:c.1537-105… XM_047437140.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X43	XM_047437141.1:c.1510-105… XM_047437141.1:c.1510-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X45	XM_047437142.1:c.1537-105… XM_047437142.1:c.1537-1055CA[2]	N/A	Intron Variant
NCOR1 transcript variant X47	XM_047437143.1:c.1537-105… XM_047437143.1:c.1537-1052CA[2]	N/A	Intron Variant
NCOR1 transcript variant X49	XM_047437144.1:c.1537-105… XM_047437144.1:c.1537-1055CA[2]	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(TG)₄T=	delGTGT	delGT	dupGT
GRCh38.p14 chr 17	NC_000017.11:g.16127254_16127262=	NC_000017.11:g.16127255GT[2]	NC_000017.11:g.16127255GT[3]	NC_000017.11:g.16127255GT[5]
GRCh37.p13 chr 17	NC_000017.10:g.16030568_16030576=	NC_000017.10:g.16030569GT[2]	NC_000017.10:g.16030569GT[3]	NC_000017.10:g.16030569GT[5]
NCOR1 RefSeqGene	NG_047111.1:g.94485_94493=	NG_047111.1:g.94486CA[2]	NG_047111.1:g.94486CA[3]	NG_047111.1:g.94486CA[5]
NCOR1 transcript variant 2	NM_001190438.1:c.1183-1048=	NM_001190438.1:c.1183-1055CA[2]	NM_001190438.1:c.1183-1055CA[3]	NM_001190438.1:c.1183-1055CA[5]
NCOR1 transcript variant 3	NM_001190440.1:c.1510-1048=	NM_001190440.1:c.1510-1055CA[2]	NM_001190440.1:c.1510-1055CA[3]	NM_001190440.1:c.1510-1055CA[5]
NCOR1 transcript variant 1	NM_006311.3:c.1510-1048=	NM_006311.3:c.1510-1055CA[2]	NM_006311.3:c.1510-1055CA[3]	NM_006311.3:c.1510-1055CA[5]
NCOR1 transcript variant 1	NM_006311.4:c.1510-1048=	NM_006311.4:c.1510-1055CA[2]	NM_006311.4:c.1510-1055CA[3]	NM_006311.4:c.1510-1055CA[5]
NCOR1 transcript variant X1	XM_005256866.1:c.1537-1045=	XM_005256866.1:c.1537-1052CA[2]	XM_005256866.1:c.1537-1052CA[3]	XM_005256866.1:c.1537-1052CA[5]
NCOR1 transcript variant X1	XM_005256866.6:c.1537-1045=	XM_005256866.6:c.1537-1052CA[2]	XM_005256866.6:c.1537-1052CA[3]	XM_005256866.6:c.1537-1052CA[5]
NCOR1 transcript variant X2	XM_005256867.1:c.1537-1045=	XM_005256867.1:c.1537-1052CA[2]	XM_005256867.1:c.1537-1052CA[3]	XM_005256867.1:c.1537-1052CA[5]
NCOR1 transcript variant X3	XM_005256868.1:c.1537-1048=	XM_005256868.1:c.1537-1055CA[2]	XM_005256868.1:c.1537-1055CA[3]	XM_005256868.1:c.1537-1055CA[5]
NCOR1 transcript variant X5	XM_005256868.6:c.1537-1048=	XM_005256868.6:c.1537-1055CA[2]	XM_005256868.6:c.1537-1055CA[3]	XM_005256868.6:c.1537-1055CA[5]
NCOR1 transcript variant X4	XM_005256869.1:c.1537-1045=	XM_005256869.1:c.1537-1052CA[2]	XM_005256869.1:c.1537-1052CA[3]	XM_005256869.1:c.1537-1052CA[5]
NCOR1 transcript variant X5	XM_005256870.1:c.1537-1045=	XM_005256870.1:c.1537-1052CA[2]	XM_005256870.1:c.1537-1052CA[3]	XM_005256870.1:c.1537-1052CA[5]
NCOR1 transcript variant X6	XM_005256871.1:c.1510-1045=	XM_005256871.1:c.1510-1052CA[2]	XM_005256871.1:c.1510-1052CA[3]	XM_005256871.1:c.1510-1052CA[5]
NCOR1 transcript variant X10	XM_005256871.6:c.1510-1045=	XM_005256871.6:c.1510-1052CA[2]	XM_005256871.6:c.1510-1052CA[3]	XM_005256871.6:c.1510-1052CA[5]
NCOR1 transcript variant X7	XM_005256872.1:c.1510-1048=	XM_005256872.1:c.1510-1055CA[2]	XM_005256872.1:c.1510-1055CA[3]	XM_005256872.1:c.1510-1055CA[5]
NCOR1 transcript variant X14	XM_005256872.6:c.1510-1048=	XM_005256872.6:c.1510-1055CA[2]	XM_005256872.6:c.1510-1055CA[3]	XM_005256872.6:c.1510-1055CA[5]
NCOR1 transcript variant X8	XM_005256873.1:c.1537-1045=	XM_005256873.1:c.1537-1052CA[2]	XM_005256873.1:c.1537-1052CA[3]	XM_005256873.1:c.1537-1052CA[5]
NCOR1 transcript variant X19	XM_005256873.6:c.1537-1045=	XM_005256873.6:c.1537-1052CA[2]	XM_005256873.6:c.1537-1052CA[3]	XM_005256873.6:c.1537-1052CA[5]
NCOR1 transcript variant X9	XM_005256874.1:c.1537-1045=	XM_005256874.1:c.1537-1052CA[2]	XM_005256874.1:c.1537-1052CA[3]	XM_005256874.1:c.1537-1052CA[5]
NCOR1 transcript variant X21	XM_005256874.6:c.1537-1045=	XM_005256874.6:c.1537-1052CA[2]	XM_005256874.6:c.1537-1052CA[3]	XM_005256874.6:c.1537-1052CA[5]
NCOR1 transcript variant X10	XM_005256875.1:c.1537-1045=	XM_005256875.1:c.1537-1052CA[2]	XM_005256875.1:c.1537-1052CA[3]	XM_005256875.1:c.1537-1052CA[5]
NCOR1 transcript variant X32	XM_005256875.5:c.1537-1045=	XM_005256875.5:c.1537-1052CA[2]	XM_005256875.5:c.1537-1052CA[3]	XM_005256875.5:c.1537-1052CA[5]
NCOR1 transcript variant X11	XM_005256876.1:c.1537-1045=	XM_005256876.1:c.1537-1052CA[2]	XM_005256876.1:c.1537-1052CA[3]	XM_005256876.1:c.1537-1052CA[5]
NCOR1 transcript variant X2	XM_006721601.5:c.1537-1045=	XM_006721601.5:c.1537-1052CA[2]	XM_006721601.5:c.1537-1052CA[3]	XM_006721601.5:c.1537-1052CA[5]
NCOR1 transcript variant X7	XM_006721602.5:c.1537-1048=	XM_006721602.5:c.1537-1055CA[2]	XM_006721602.5:c.1537-1055CA[3]	XM_006721602.5:c.1537-1055CA[5]
NCOR1 transcript variant X17	XM_006721603.5:c.1537-1045=	XM_006721603.5:c.1537-1052CA[2]	XM_006721603.5:c.1537-1052CA[3]	XM_006721603.5:c.1537-1052CA[5]
NCOR1 transcript variant X26	XM_006721604.5:c.1510-1048=	XM_006721604.5:c.1510-1055CA[2]	XM_006721604.5:c.1510-1055CA[3]	XM_006721604.5:c.1510-1055CA[5]
NCOR1 transcript variant X6	XM_011524084.4:c.1537-1045=	XM_011524084.4:c.1537-1052CA[2]	XM_011524084.4:c.1537-1052CA[3]	XM_011524084.4:c.1537-1052CA[5]
NCOR1 transcript variant X36	XM_011524085.4:c.1537-1045=	XM_011524085.4:c.1537-1052CA[2]	XM_011524085.4:c.1537-1052CA[3]	XM_011524085.4:c.1537-1052CA[5]
NCOR1 transcript variant X46	XM_011524086.4:c.1510-1048=	XM_011524086.4:c.1510-1055CA[2]	XM_011524086.4:c.1510-1055CA[3]	XM_011524086.4:c.1510-1055CA[5]
NCOR1 transcript variant X3	XM_017025396.3:c.1537-1045=	XM_017025396.3:c.1537-1052CA[2]	XM_017025396.3:c.1537-1052CA[3]	XM_017025396.3:c.1537-1052CA[5]
NCOR1 transcript variant X4	XM_017025397.3:c.1537-1045=	XM_017025397.3:c.1537-1052CA[2]	XM_017025397.3:c.1537-1052CA[3]	XM_017025397.3:c.1537-1052CA[5]
NCOR1 transcript variant X8	XM_017025400.3:c.1537-1048=	XM_017025400.3:c.1537-1055CA[2]	XM_017025400.3:c.1537-1055CA[3]	XM_017025400.3:c.1537-1055CA[5]
NCOR1 transcript variant X9	XM_017025401.3:c.1537-1048=	XM_017025401.3:c.1537-1055CA[2]	XM_017025401.3:c.1537-1055CA[3]	XM_017025401.3:c.1537-1055CA[5]
NCOR1 transcript variant X11	XM_017025403.3:c.1510-1045=	XM_017025403.3:c.1510-1052CA[2]	XM_017025403.3:c.1510-1052CA[3]	XM_017025403.3:c.1510-1052CA[5]
NCOR1 transcript variant X15	XM_017025409.3:c.1510-1048=	XM_017025409.3:c.1510-1055CA[2]	XM_017025409.3:c.1510-1055CA[3]	XM_017025409.3:c.1510-1055CA[5]
NCOR1 transcript variant X23	XM_017025415.3:c.1537-1045=	XM_017025415.3:c.1537-1052CA[2]	XM_017025415.3:c.1537-1052CA[3]	XM_017025415.3:c.1537-1052CA[5]
NCOR1 transcript variant X30	XM_017025417.3:c.1537-1045=	XM_017025417.3:c.1537-1052CA[2]	XM_017025417.3:c.1537-1052CA[3]	XM_017025417.3:c.1537-1052CA[5]
NCOR1 transcript variant X37	XM_017025418.3:c.1537-1045=	XM_017025418.3:c.1537-1052CA[2]	XM_017025418.3:c.1537-1052CA[3]	XM_017025418.3:c.1537-1052CA[5]
NCOR1 transcript variant X44	XM_017025419.3:c.1537-1045=	XM_017025419.3:c.1537-1052CA[2]	XM_017025419.3:c.1537-1052CA[3]	XM_017025419.3:c.1537-1052CA[5]
NCOR1 transcript variant X48	XM_017025420.3:c.1537-1045=	XM_017025420.3:c.1537-1052CA[2]	XM_017025420.3:c.1537-1052CA[3]	XM_017025420.3:c.1537-1052CA[5]
NCOR1 transcript variant X12	XM_047437121.1:c.1510-1045=	XM_047437121.1:c.1510-1052CA[2]	XM_047437121.1:c.1510-1052CA[3]	XM_047437121.1:c.1510-1052CA[5]
NCOR1 transcript variant X13	XM_047437122.1:c.1510-1045=	XM_047437122.1:c.1510-1052CA[2]	XM_047437122.1:c.1510-1052CA[3]	XM_047437122.1:c.1510-1052CA[5]
NCOR1 transcript variant X16	XM_047437123.1:c.1510-1048=	XM_047437123.1:c.1510-1055CA[2]	XM_047437123.1:c.1510-1055CA[3]	XM_047437123.1:c.1510-1055CA[5]
NCOR1 transcript variant X18	XM_047437124.1:c.1537-1045=	XM_047437124.1:c.1537-1052CA[2]	XM_047437124.1:c.1537-1052CA[3]	XM_047437124.1:c.1537-1052CA[5]
NCOR1 transcript variant X20	XM_047437125.1:c.1537-1048=	XM_047437125.1:c.1537-1055CA[2]	XM_047437125.1:c.1537-1055CA[3]	XM_047437125.1:c.1537-1055CA[5]
NCOR1 transcript variant X22	XM_047437126.1:c.1537-1048=	XM_047437126.1:c.1537-1055CA[2]	XM_047437126.1:c.1537-1055CA[3]	XM_047437126.1:c.1537-1055CA[5]
NCOR1 transcript variant X24	XM_047437127.1:c.1537-1048=	XM_047437127.1:c.1537-1055CA[2]	XM_047437127.1:c.1537-1055CA[3]	XM_047437127.1:c.1537-1055CA[5]
NCOR1 transcript variant X25	XM_047437128.1:c.1510-1045=	XM_047437128.1:c.1510-1052CA[2]	XM_047437128.1:c.1510-1052CA[3]	XM_047437128.1:c.1510-1052CA[5]
NCOR1 transcript variant X27	XM_047437129.1:c.1537-1045=	XM_047437129.1:c.1537-1052CA[2]	XM_047437129.1:c.1537-1052CA[3]	XM_047437129.1:c.1537-1052CA[5]
NCOR1 transcript variant X28	XM_047437130.1:c.1537-1048=	XM_047437130.1:c.1537-1055CA[2]	XM_047437130.1:c.1537-1055CA[3]	XM_047437130.1:c.1537-1055CA[5]
NCOR1 transcript variant X29	XM_047437131.1:c.1537-1045=	XM_047437131.1:c.1537-1052CA[2]	XM_047437131.1:c.1537-1052CA[3]	XM_047437131.1:c.1537-1052CA[5]
NCOR1 transcript variant X31	XM_047437132.1:c.1537-1048=	XM_047437132.1:c.1537-1055CA[2]	XM_047437132.1:c.1537-1055CA[3]	XM_047437132.1:c.1537-1055CA[5]
NCOR1 transcript variant X33	XM_047437133.1:c.1510-1045=	XM_047437133.1:c.1510-1052CA[2]	XM_047437133.1:c.1510-1052CA[3]	XM_047437133.1:c.1510-1052CA[5]
NCOR1 transcript variant X34	XM_047437134.1:c.1537-1048=	XM_047437134.1:c.1537-1055CA[2]	XM_047437134.1:c.1537-1055CA[3]	XM_047437134.1:c.1537-1055CA[5]
NCOR1 transcript variant X35	XM_047437135.1:c.1537-1045=	XM_047437135.1:c.1537-1052CA[2]	XM_047437135.1:c.1537-1052CA[3]	XM_047437135.1:c.1537-1052CA[5]
NCOR1 transcript variant X38	XM_047437136.1:c.1537-1045=	XM_047437136.1:c.1537-1052CA[2]	XM_047437136.1:c.1537-1052CA[3]	XM_047437136.1:c.1537-1052CA[5]
NCOR1 transcript variant X39	XM_047437137.1:c.1537-1045=	XM_047437137.1:c.1537-1052CA[2]	XM_047437137.1:c.1537-1052CA[3]	XM_047437137.1:c.1537-1052CA[5]
NCOR1 transcript variant X40	XM_047437138.1:c.1537-1048=	XM_047437138.1:c.1537-1055CA[2]	XM_047437138.1:c.1537-1055CA[3]	XM_047437138.1:c.1537-1055CA[5]
NCOR1 transcript variant X41	XM_047437139.1:c.1537-1045=	XM_047437139.1:c.1537-1052CA[2]	XM_047437139.1:c.1537-1052CA[3]	XM_047437139.1:c.1537-1052CA[5]
NCOR1 transcript variant X42	XM_047437140.1:c.1537-1048=	XM_047437140.1:c.1537-1055CA[2]	XM_047437140.1:c.1537-1055CA[3]	XM_047437140.1:c.1537-1055CA[5]
NCOR1 transcript variant X43	XM_047437141.1:c.1510-1045=	XM_047437141.1:c.1510-1052CA[2]	XM_047437141.1:c.1510-1052CA[3]	XM_047437141.1:c.1510-1052CA[5]
NCOR1 transcript variant X45	XM_047437142.1:c.1537-1048=	XM_047437142.1:c.1537-1055CA[2]	XM_047437142.1:c.1537-1055CA[3]	XM_047437142.1:c.1537-1055CA[5]
NCOR1 transcript variant X47	XM_047437143.1:c.1537-1045=	XM_047437143.1:c.1537-1052CA[2]	XM_047437143.1:c.1537-1052CA[3]	XM_047437143.1:c.1537-1052CA[5]
NCOR1 transcript variant X49	XM_047437144.1:c.1537-1048=	XM_047437144.1:c.1537-1055CA[2]	XM_047437144.1:c.1537-1055CA[3]	XM_047437144.1:c.1537-1055CA[5]

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

20 SubSNP, 13 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	SSMP	ss664345341	Jan 10, 2018 (151)
2	SWEGEN	ss3015265831	Jan 10, 2018 (151)
3	EVA_DECODE	ss3700169719	Jul 13, 2019 (153)
4	ACPOP	ss3741911283	Jul 13, 2019 (153)
5	KOGIC	ss3978487100	Apr 27, 2020 (154)
6	KOGIC	ss3978487101	Apr 27, 2020 (154)
7	GNOMAD	ss4308622760	Apr 27, 2021 (155)
8	GNOMAD	ss4308622762	Apr 27, 2021 (155)
9	GNOMAD	ss4308622763	Apr 27, 2021 (155)
10	TOMMO_GENOMICS	ss5221685966	Apr 27, 2021 (155)
11	TOMMO_GENOMICS	ss5221685967	Apr 27, 2021 (155)
12	TOMMO_GENOMICS	ss5221685968	Apr 27, 2021 (155)
13	1000G_HIGH_COVERAGE	ss5302576421	Oct 17, 2022 (156)
14	HUGCELL_USP	ss5495733757	Oct 17, 2022 (156)
15	HUGCELL_USP	ss5495733758	Oct 17, 2022 (156)
16	TOMMO_GENOMICS	ss5777335769	Oct 17, 2022 (156)
17	TOMMO_GENOMICS	ss5777335770	Oct 17, 2022 (156)
18	TOMMO_GENOMICS	ss5777335772	Oct 17, 2022 (156)
19	YY_MCH	ss5816375182	Oct 17, 2022 (156)
20	EVA	ss5833780788	Oct 17, 2022 (156)
21	gnomAD - Genomes Submission ignored due to conflicting rows: Row 502614177 (NC_000017.11:16127253::TG 5/111896) Row 502614179 (NC_000017.11:16127253:TG: 759/111884) Row 502614180 (NC_000017.11:16127253:TGTG: 1000/111660)	-	Apr 27, 2021 (155)
22	gnomAD - Genomes Submission ignored due to conflicting rows: Row 502614177 (NC_000017.11:16127253::TG 5/111896) Row 502614179 (NC_000017.11:16127253:TG: 759/111884) Row 502614180 (NC_000017.11:16127253:TGTG: 1000/111660)	-	Apr 27, 2021 (155)
23	gnomAD - Genomes Submission ignored due to conflicting rows: Row 502614177 (NC_000017.11:16127253::TG 5/111896) Row 502614179 (NC_000017.11:16127253:TG: 759/111884) Row 502614180 (NC_000017.11:16127253:TGTG: 1000/111660)	-	Apr 27, 2021 (155)
24	Korean Genome Project Submission ignored due to conflicting rows: Row 34865101 (NC_000017.11:16127255:TG: 64/1818) Row 34865102 (NC_000017.11:16127253:TGTG: 6/1818)	-	Apr 27, 2020 (154)
25	Korean Genome Project Submission ignored due to conflicting rows: Row 34865101 (NC_000017.11:16127255:TG: 64/1818) Row 34865102 (NC_000017.11:16127253:TGTG: 6/1818)	-	Apr 27, 2020 (154)
26	Northern Sweden	NC_000017.10 - 16030568	Jul 13, 2019 (153)
27	8.3KJPN Submission ignored due to conflicting rows: Row 79655273 (NC_000017.10:16030567:TG: 556/16714) Row 79655274 (NC_000017.10:16030567:TGTG: 163/16714) Row 79655275 (NC_000017.10:16030567::TG 4/16714)	-	Apr 27, 2021 (155)
28	8.3KJPN Submission ignored due to conflicting rows: Row 79655273 (NC_000017.10:16030567:TG: 556/16714) Row 79655274 (NC_000017.10:16030567:TGTG: 163/16714) Row 79655275 (NC_000017.10:16030567::TG 4/16714)	-	Apr 27, 2021 (155)
29	8.3KJPN Submission ignored due to conflicting rows: Row 79655273 (NC_000017.10:16030567:TG: 556/16714) Row 79655274 (NC_000017.10:16030567:TGTG: 163/16714) Row 79655275 (NC_000017.10:16030567::TG 4/16714)	-	Apr 27, 2021 (155)
30	14KJPN Submission ignored due to conflicting rows: Row 111172873 (NC_000017.11:16127253:TGTG: 248/28256) Row 111172874 (NC_000017.11:16127253:TG: 886/28256) Row 111172876 (NC_000017.11:16127253::TG 5/28256)	-	Oct 17, 2022 (156)
31	14KJPN Submission ignored due to conflicting rows: Row 111172873 (NC_000017.11:16127253:TGTG: 248/28256) Row 111172874 (NC_000017.11:16127253:TG: 886/28256) Row 111172876 (NC_000017.11:16127253::TG 5/28256)	-	Oct 17, 2022 (156)
32	14KJPN Submission ignored due to conflicting rows: Row 111172873 (NC_000017.11:16127253:TGTG: 248/28256) Row 111172874 (NC_000017.11:16127253:TG: 886/28256) Row 111172876 (NC_000017.11:16127253::TG 5/28256)	-	Oct 17, 2022 (156)
33	ALFA	NC_000017.11 - 16127254	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss5221685967	NC_000017.10:16030567:TGTG:	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGT	(self)
ss3978487101, ss4308622763, ss5302576421, ss5495733757, ss5777335769	NC_000017.11:16127253:TGTG:	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGT	(self)
12277513938	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGT	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGT	(self)
15196148, ss664345341, ss3015265831, ss3741911283, ss5221685966, ss5833780788	NC_000017.10:16030567:TG:	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGT	(self)
ss3700169719, ss4308622762, ss5495733758, ss5777335770, ss5816375182	NC_000017.11:16127253:TG:	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGT	(self)
12277513938	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGT	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGT	(self)
ss3978487100	NC_000017.11:16127255:TG:	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGT	(self)
ss5221685968	NC_000017.10:16030567::TG	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGTGTGT	(self)
ss4308622760, ss5777335772	NC_000017.11:16127253::TG	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGTGTGT	(self)
12277513938	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGTGTGT	NC_000017.11:16127253:TGTGTGTGT:TG… NC_000017.11:16127253:TGTGTGTGT:TGTGTGTGTGT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1263494908

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs1263494908