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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs11343442

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr3:15441490-15441511 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
del(T)13 / del(T)12 / del(T)11 / d…

del(T)13 / del(T)12 / del(T)11 / del(T)10 / del(T)9 / del(T)8 / del(T)7 / del(T)6 / del(T)5 / del(T)4 / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)4 / dup(T)5 / dup(T)6 / dup(T)7 / dup(T)8 / dup(T)9 / dup(T)10 / dup(T)11 / dup(T)15 / dup(T)22 / ins(T)36

Variation Type
Indel Insertion and Deletion
Frequency
delT=0.0650 (510/7842, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
EAF1 : 3 Prime UTR Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 7842 TTTTTTTTTTTTTTTTTTTTTT=0.8995 TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0087, TTTTTTTTTTTTTTTTTTTTT=0.0650, TTTTTTTTTTTTTTTTTTTTTTT=0.0242, TTTTTTTTTTTTTTTTTTTTTTTT=0.0015, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.0008, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0003, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0000 0.878993 0.006768 0.114239 5
European Sub 7048 TTTTTTTTTTTTTTTTTTTTTT=0.8883 TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0095, TTTTTTTTTTTTTTTTTTTTT=0.0724, TTTTTTTTTTTTTTTTTTTTTTT=0.0270, TTTTTTTTTTTTTTTTTTTTTTTT=0.0017, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.0009, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0003, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0000 0.864463 0.00758 0.127956 3
African Sub 372 TTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000 1.0 0.0 0.0 N/A
African Others Sub 12 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
African American Sub 360 TTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000 1.0 0.0 0.0 N/A
Asian Sub 22 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
East Asian Sub 20 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 2 TTTTTTTTTTTTTTTTTTTTTT=1.0 TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0 1.0 0.0 0.0 N/A
Latin American 1 Sub 46 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
Latin American 2 Sub 198 TTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000 1.0 0.0 0.0 N/A
South Asian Sub 30 TTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00 1.0 0.0 0.0 N/A
Other Sub 126 TTTTTTTTTTTTTTTTTTTTTT=0.992 TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.008, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000 1.0 0.0 0.0 N/A


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
Allele Frequency Aggregator Total Global 7842 (T)22=0.8995 del(T)13=0.0000, del(T)12=0.0000, del(T)10=0.0000, del(T)9=0.0000, del(T)8=0.0000, del(T)7=0.0000, del(T)6=0.0000, del(T)5=0.0000, del(T)4=0.0000, delTTT=0.0000, delTT=0.0087, delT=0.0650, dupT=0.0242, dupTT=0.0015, dupTTT=0.0000, dup(T)4=0.0008, dup(T)22=0.0003
Allele Frequency Aggregator European Sub 7048 (T)22=0.8883 del(T)13=0.0000, del(T)12=0.0000, del(T)10=0.0000, del(T)9=0.0000, del(T)8=0.0000, del(T)7=0.0000, del(T)6=0.0000, del(T)5=0.0000, del(T)4=0.0000, delTTT=0.0000, delTT=0.0095, delT=0.0724, dupT=0.0270, dupTT=0.0017, dupTTT=0.0000, dup(T)4=0.0009, dup(T)22=0.0003
Allele Frequency Aggregator African Sub 372 (T)22=1.000 del(T)13=0.000, del(T)12=0.000, del(T)10=0.000, del(T)9=0.000, del(T)8=0.000, del(T)7=0.000, del(T)6=0.000, del(T)5=0.000, del(T)4=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)4=0.000, dup(T)22=0.000
Allele Frequency Aggregator Latin American 2 Sub 198 (T)22=1.000 del(T)13=0.000, del(T)12=0.000, del(T)10=0.000, del(T)9=0.000, del(T)8=0.000, del(T)7=0.000, del(T)6=0.000, del(T)5=0.000, del(T)4=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)4=0.000, dup(T)22=0.000
Allele Frequency Aggregator Other Sub 126 (T)22=0.992 del(T)13=0.000, del(T)12=0.000, del(T)10=0.000, del(T)9=0.000, del(T)8=0.000, del(T)7=0.000, del(T)6=0.000, del(T)5=0.000, del(T)4=0.000, delTTT=0.000, delTT=0.008, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)4=0.000, dup(T)22=0.000
Allele Frequency Aggregator Latin American 1 Sub 46 (T)22=1.00 del(T)13=0.00, del(T)12=0.00, del(T)10=0.00, del(T)9=0.00, del(T)8=0.00, del(T)7=0.00, del(T)6=0.00, del(T)5=0.00, del(T)4=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)4=0.00, dup(T)22=0.00
Allele Frequency Aggregator South Asian Sub 30 (T)22=1.00 del(T)13=0.00, del(T)12=0.00, del(T)10=0.00, del(T)9=0.00, del(T)8=0.00, del(T)7=0.00, del(T)6=0.00, del(T)5=0.00, del(T)4=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)4=0.00, dup(T)22=0.00
Allele Frequency Aggregator Asian Sub 22 (T)22=1.00 del(T)13=0.00, del(T)12=0.00, del(T)10=0.00, del(T)9=0.00, del(T)8=0.00, del(T)7=0.00, del(T)6=0.00, del(T)5=0.00, del(T)4=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)4=0.00, dup(T)22=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 3 NC_000003.12:g.15441499_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441500_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441501_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441502_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441503_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441504_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441505_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441506_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441507_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441508_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441509_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441510_15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441511del
GRCh38.p14 chr 3 NC_000003.12:g.15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441510_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441509_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441508_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441507_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441506_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441505_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441504_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441503_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441502_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441501_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441497_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441490_15441511dup
GRCh38.p14 chr 3 NC_000003.12:g.15441511_15441512insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 3 NC_000003.11:g.15483006_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483007_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483008_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483009_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483010_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483011_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483012_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483013_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483014_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483015_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483016_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483017_15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483018del
GRCh37.p13 chr 3 NC_000003.11:g.15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483017_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483016_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483015_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483014_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483013_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483012_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483011_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483010_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483009_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483008_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483004_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15482997_15483018dup
GRCh37.p13 chr 3 NC_000003.11:g.15483018_15483019insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene: EAF1, ELL associated factor 1 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
EAF1 transcript NM_033083.7:c.*2335_*2356= N/A 3 Prime UTR Variant
EAF1 transcript variant X1 XM_011534165.2:c.*2335_*2…

XM_011534165.2:c.*2335_*2356=

N/A 3 Prime UTR Variant
EAF1 transcript variant X2 XM_011534166.2:c.*2335_*2…

XM_011534166.2:c.*2335_*2356=

N/A 3 Prime UTR Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement (T)22= del(T)13 del(T)12 del(T)11 del(T)10 del(T)9 del(T)8 del(T)7 del(T)6 del(T)5 del(T)4 delTTT delTT delT dupT dupTT dupTTT dup(T)4 dup(T)5 dup(T)6 dup(T)7 dup(T)8 dup(T)9 dup(T)10 dup(T)11 dup(T)15 dup(T)22 ins(T)36
GRCh38.p14 chr 3 NC_000003.12:g.15441490_15441511= NC_000003.12:g.15441499_15441511del NC_000003.12:g.15441500_15441511del NC_000003.12:g.15441501_15441511del NC_000003.12:g.15441502_15441511del NC_000003.12:g.15441503_15441511del NC_000003.12:g.15441504_15441511del NC_000003.12:g.15441505_15441511del NC_000003.12:g.15441506_15441511del NC_000003.12:g.15441507_15441511del NC_000003.12:g.15441508_15441511del NC_000003.12:g.15441509_15441511del NC_000003.12:g.15441510_15441511del NC_000003.12:g.15441511del NC_000003.12:g.15441511dup NC_000003.12:g.15441510_15441511dup NC_000003.12:g.15441509_15441511dup NC_000003.12:g.15441508_15441511dup NC_000003.12:g.15441507_15441511dup NC_000003.12:g.15441506_15441511dup NC_000003.12:g.15441505_15441511dup NC_000003.12:g.15441504_15441511dup NC_000003.12:g.15441503_15441511dup NC_000003.12:g.15441502_15441511dup NC_000003.12:g.15441501_15441511dup NC_000003.12:g.15441497_15441511dup NC_000003.12:g.15441490_15441511dup NC_000003.12:g.15441511_15441512insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 3 NC_000003.11:g.15482997_15483018= NC_000003.11:g.15483006_15483018del NC_000003.11:g.15483007_15483018del NC_000003.11:g.15483008_15483018del NC_000003.11:g.15483009_15483018del NC_000003.11:g.15483010_15483018del NC_000003.11:g.15483011_15483018del NC_000003.11:g.15483012_15483018del NC_000003.11:g.15483013_15483018del NC_000003.11:g.15483014_15483018del NC_000003.11:g.15483015_15483018del NC_000003.11:g.15483016_15483018del NC_000003.11:g.15483017_15483018del NC_000003.11:g.15483018del NC_000003.11:g.15483018dup NC_000003.11:g.15483017_15483018dup NC_000003.11:g.15483016_15483018dup NC_000003.11:g.15483015_15483018dup NC_000003.11:g.15483014_15483018dup NC_000003.11:g.15483013_15483018dup NC_000003.11:g.15483012_15483018dup NC_000003.11:g.15483011_15483018dup NC_000003.11:g.15483010_15483018dup NC_000003.11:g.15483009_15483018dup NC_000003.11:g.15483008_15483018dup NC_000003.11:g.15483004_15483018dup NC_000003.11:g.15482997_15483018dup NC_000003.11:g.15483018_15483019insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
EAF1 transcript NM_033083.7:c.*2335_*2356= NM_033083.7:c.*2344_*2356del NM_033083.7:c.*2345_*2356del NM_033083.7:c.*2346_*2356del NM_033083.7:c.*2347_*2356del NM_033083.7:c.*2348_*2356del NM_033083.7:c.*2349_*2356del NM_033083.7:c.*2350_*2356del NM_033083.7:c.*2351_*2356del NM_033083.7:c.*2352_*2356del NM_033083.7:c.*2353_*2356del NM_033083.7:c.*2354_*2356del NM_033083.7:c.*2355_*2356del NM_033083.7:c.*2356del NM_033083.7:c.*2356dup NM_033083.7:c.*2355_*2356dup NM_033083.7:c.*2354_*2356dup NM_033083.7:c.*2353_*2356dup NM_033083.7:c.*2352_*2356dup NM_033083.7:c.*2351_*2356dup NM_033083.7:c.*2350_*2356dup NM_033083.7:c.*2349_*2356dup NM_033083.7:c.*2348_*2356dup NM_033083.7:c.*2347_*2356dup NM_033083.7:c.*2346_*2356dup NM_033083.7:c.*2342_*2356dup NM_033083.7:c.*2335_*2356dup NM_033083.7:c.*2356_*2357insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
EAF1 transcript NM_033083.6:c.*2335_*2356= NM_033083.6:c.*2344_*2356del NM_033083.6:c.*2345_*2356del NM_033083.6:c.*2346_*2356del NM_033083.6:c.*2347_*2356del NM_033083.6:c.*2348_*2356del NM_033083.6:c.*2349_*2356del NM_033083.6:c.*2350_*2356del NM_033083.6:c.*2351_*2356del NM_033083.6:c.*2352_*2356del NM_033083.6:c.*2353_*2356del NM_033083.6:c.*2354_*2356del NM_033083.6:c.*2355_*2356del NM_033083.6:c.*2356del NM_033083.6:c.*2356dup NM_033083.6:c.*2355_*2356dup NM_033083.6:c.*2354_*2356dup NM_033083.6:c.*2353_*2356dup NM_033083.6:c.*2352_*2356dup NM_033083.6:c.*2351_*2356dup NM_033083.6:c.*2350_*2356dup NM_033083.6:c.*2349_*2356dup NM_033083.6:c.*2348_*2356dup NM_033083.6:c.*2347_*2356dup NM_033083.6:c.*2346_*2356dup NM_033083.6:c.*2342_*2356dup NM_033083.6:c.*2335_*2356dup NM_033083.6:c.*2356_*2357insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
EAF1 transcript variant X1 XM_011534165.2:c.*2335_*2356= XM_011534165.2:c.*2344_*2356del XM_011534165.2:c.*2345_*2356del XM_011534165.2:c.*2346_*2356del XM_011534165.2:c.*2347_*2356del XM_011534165.2:c.*2348_*2356del XM_011534165.2:c.*2349_*2356del XM_011534165.2:c.*2350_*2356del XM_011534165.2:c.*2351_*2356del XM_011534165.2:c.*2352_*2356del XM_011534165.2:c.*2353_*2356del XM_011534165.2:c.*2354_*2356del XM_011534165.2:c.*2355_*2356del XM_011534165.2:c.*2356del XM_011534165.2:c.*2356dup XM_011534165.2:c.*2355_*2356dup XM_011534165.2:c.*2354_*2356dup XM_011534165.2:c.*2353_*2356dup XM_011534165.2:c.*2352_*2356dup XM_011534165.2:c.*2351_*2356dup XM_011534165.2:c.*2350_*2356dup XM_011534165.2:c.*2349_*2356dup XM_011534165.2:c.*2348_*2356dup XM_011534165.2:c.*2347_*2356dup XM_011534165.2:c.*2346_*2356dup XM_011534165.2:c.*2342_*2356dup XM_011534165.2:c.*2335_*2356dup XM_011534165.2:c.*2356_*2357insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
EAF1 transcript variant X2 XM_011534165.1:c.*2335_*2356= XM_011534165.1:c.*2344_*2356del XM_011534165.1:c.*2345_*2356del XM_011534165.1:c.*2346_*2356del XM_011534165.1:c.*2347_*2356del XM_011534165.1:c.*2348_*2356del XM_011534165.1:c.*2349_*2356del XM_011534165.1:c.*2350_*2356del XM_011534165.1:c.*2351_*2356del XM_011534165.1:c.*2352_*2356del XM_011534165.1:c.*2353_*2356del XM_011534165.1:c.*2354_*2356del XM_011534165.1:c.*2355_*2356del XM_011534165.1:c.*2356del XM_011534165.1:c.*2356dup XM_011534165.1:c.*2355_*2356dup XM_011534165.1:c.*2354_*2356dup XM_011534165.1:c.*2353_*2356dup XM_011534165.1:c.*2352_*2356dup XM_011534165.1:c.*2351_*2356dup XM_011534165.1:c.*2350_*2356dup XM_011534165.1:c.*2349_*2356dup XM_011534165.1:c.*2348_*2356dup XM_011534165.1:c.*2347_*2356dup XM_011534165.1:c.*2346_*2356dup XM_011534165.1:c.*2342_*2356dup XM_011534165.1:c.*2335_*2356dup XM_011534165.1:c.*2356_*2357insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
EAF1 transcript variant X2 XM_011534166.2:c.*2335_*2356= XM_011534166.2:c.*2344_*2356del XM_011534166.2:c.*2345_*2356del XM_011534166.2:c.*2346_*2356del XM_011534166.2:c.*2347_*2356del XM_011534166.2:c.*2348_*2356del XM_011534166.2:c.*2349_*2356del XM_011534166.2:c.*2350_*2356del XM_011534166.2:c.*2351_*2356del XM_011534166.2:c.*2352_*2356del XM_011534166.2:c.*2353_*2356del XM_011534166.2:c.*2354_*2356del XM_011534166.2:c.*2355_*2356del XM_011534166.2:c.*2356del XM_011534166.2:c.*2356dup XM_011534166.2:c.*2355_*2356dup XM_011534166.2:c.*2354_*2356dup XM_011534166.2:c.*2353_*2356dup XM_011534166.2:c.*2352_*2356dup XM_011534166.2:c.*2351_*2356dup XM_011534166.2:c.*2350_*2356dup XM_011534166.2:c.*2349_*2356dup XM_011534166.2:c.*2348_*2356dup XM_011534166.2:c.*2347_*2356dup XM_011534166.2:c.*2346_*2356dup XM_011534166.2:c.*2342_*2356dup XM_011534166.2:c.*2335_*2356dup XM_011534166.2:c.*2356_*2357insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
EAF1 transcript variant X3 XM_011534166.1:c.*2335_*2356= XM_011534166.1:c.*2344_*2356del XM_011534166.1:c.*2345_*2356del XM_011534166.1:c.*2346_*2356del XM_011534166.1:c.*2347_*2356del XM_011534166.1:c.*2348_*2356del XM_011534166.1:c.*2349_*2356del XM_011534166.1:c.*2350_*2356del XM_011534166.1:c.*2351_*2356del XM_011534166.1:c.*2352_*2356del XM_011534166.1:c.*2353_*2356del XM_011534166.1:c.*2354_*2356del XM_011534166.1:c.*2355_*2356del XM_011534166.1:c.*2356del XM_011534166.1:c.*2356dup XM_011534166.1:c.*2355_*2356dup XM_011534166.1:c.*2354_*2356dup XM_011534166.1:c.*2353_*2356dup XM_011534166.1:c.*2352_*2356dup XM_011534166.1:c.*2351_*2356dup XM_011534166.1:c.*2350_*2356dup XM_011534166.1:c.*2349_*2356dup XM_011534166.1:c.*2348_*2356dup XM_011534166.1:c.*2347_*2356dup XM_011534166.1:c.*2346_*2356dup XM_011534166.1:c.*2342_*2356dup XM_011534166.1:c.*2335_*2356dup XM_011534166.1:c.*2356_*2357insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

53 SubSNP, 37 Frequency submissions
No Submitter Submission ID Date (Build)
1 ABI ss41994670 Mar 14, 2006 (137)
2 HGSV ss80390972 Dec 15, 2007 (137)
3 HUMANGENOME_JCVI ss95310989 Feb 06, 2009 (137)
4 PJP ss295089364 May 09, 2011 (137)
5 PJP ss295089365 May 09, 2011 (137)
6 EVA_UK10K_TWINSUK ss1703523778 Apr 01, 2015 (144)
7 EVA_UK10K_ALSPAC ss1703523785 Apr 01, 2015 (144)
8 EVA_UK10K_ALSPAC ss1710068707 Apr 01, 2015 (144)
9 EVA_UK10K_TWINSUK ss1710068720 Apr 01, 2015 (144)
10 TMC_SNPDB ss1997155397 Jul 19, 2016 (147)
11 SWEGEN ss2991879525 Nov 08, 2017 (151)
12 MCHAISSO ss3065868718 Nov 08, 2017 (151)
13 EVA ss3827677140 Apr 25, 2020 (154)
14 GNOMAD ss4066364337 Apr 27, 2021 (155)
15 GNOMAD ss4066364338 Apr 27, 2021 (155)
16 GNOMAD ss4066364339 Apr 27, 2021 (155)
17 GNOMAD ss4066364340 Apr 27, 2021 (155)
18 GNOMAD ss4066364341 Apr 27, 2021 (155)
19 GNOMAD ss4066364342 Apr 27, 2021 (155)
20 GNOMAD ss4066364343 Apr 27, 2021 (155)
21 GNOMAD ss4066364344 Apr 27, 2021 (155)
22 GNOMAD ss4066364345 Apr 27, 2021 (155)
23 GNOMAD ss4066364346 Apr 27, 2021 (155)
24 GNOMAD ss4066364347 Apr 27, 2021 (155)
25 GNOMAD ss4066364348 Apr 27, 2021 (155)
26 GNOMAD ss4066364349 Apr 27, 2021 (155)
27 GNOMAD ss4066364350 Apr 27, 2021 (155)
28 GNOMAD ss4066364351 Apr 27, 2021 (155)
29 GNOMAD ss4066364352 Apr 27, 2021 (155)
30 GNOMAD ss4066364353 Apr 27, 2021 (155)
31 GNOMAD ss4066364354 Apr 27, 2021 (155)
32 GNOMAD ss4066364355 Apr 27, 2021 (155)
33 GNOMAD ss4066364356 Apr 27, 2021 (155)
34 GNOMAD ss4066364357 Apr 27, 2021 (155)
35 GNOMAD ss4066364358 Apr 27, 2021 (155)
36 TOMMO_GENOMICS ss5157937522 Apr 27, 2021 (155)
37 TOMMO_GENOMICS ss5157937523 Apr 27, 2021 (155)
38 TOMMO_GENOMICS ss5157937524 Apr 27, 2021 (155)
39 TOMMO_GENOMICS ss5157937525 Apr 27, 2021 (155)
40 TOMMO_GENOMICS ss5157937526 Apr 27, 2021 (155)
41 1000G_HIGH_COVERAGE ss5253156478 Oct 13, 2022 (156)
42 1000G_HIGH_COVERAGE ss5253156479 Oct 13, 2022 (156)
43 1000G_HIGH_COVERAGE ss5253156480 Oct 13, 2022 (156)
44 HUGCELL_USP ss5452645629 Oct 13, 2022 (156)
45 HUGCELL_USP ss5452645630 Oct 13, 2022 (156)
46 HUGCELL_USP ss5452645631 Oct 13, 2022 (156)
47 TOMMO_GENOMICS ss5689246108 Oct 13, 2022 (156)
48 TOMMO_GENOMICS ss5689246109 Oct 13, 2022 (156)
49 TOMMO_GENOMICS ss5689246110 Oct 13, 2022 (156)
50 TOMMO_GENOMICS ss5689246111 Oct 13, 2022 (156)
51 TOMMO_GENOMICS ss5689246112 Oct 13, 2022 (156)
52 EVA ss5825388450 Oct 13, 2022 (156)
53 EVA ss5825388451 Oct 13, 2022 (156)
54 The Avon Longitudinal Study of Parents and Children

Submission ignored due to conflicting rows:
Row 7805809 (NC_000003.11:15482997:T: 2070/3854)
Row 7805810 (NC_000003.11:15482996:TTT: 1164/3854)

- Oct 12, 2018 (152)
55 The Avon Longitudinal Study of Parents and Children

Submission ignored due to conflicting rows:
Row 7805809 (NC_000003.11:15482997:T: 2070/3854)
Row 7805810 (NC_000003.11:15482996:TTT: 1164/3854)

- Oct 12, 2018 (152)
56 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
57 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
58 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
59 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
60 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
61 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
62 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
63 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
64 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
65 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
66 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
67 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
68 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
69 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
70 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
71 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
72 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
73 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
74 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
75 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
76 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
77 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 99908648 (NC_000003.12:15441489::T 2556/66220)
Row 99908649 (NC_000003.12:15441489::TT 192/66220)
Row 99908650 (NC_000003.12:15441489::TTT 42/66214)...

- Apr 27, 2021 (155)
78 8.3KJPN

Submission ignored due to conflicting rows:
Row 15906829 (NC_000003.11:15482996:T: 5140/16504)
Row 15906830 (NC_000003.11:15482996:TT: 652/16504)
Row 15906831 (NC_000003.11:15482996::T 79/16504)...

- Apr 27, 2021 (155)
79 8.3KJPN

Submission ignored due to conflicting rows:
Row 15906829 (NC_000003.11:15482996:T: 5140/16504)
Row 15906830 (NC_000003.11:15482996:TT: 652/16504)
Row 15906831 (NC_000003.11:15482996::T 79/16504)...

- Apr 27, 2021 (155)
80 8.3KJPN

Submission ignored due to conflicting rows:
Row 15906829 (NC_000003.11:15482996:T: 5140/16504)
Row 15906830 (NC_000003.11:15482996:TT: 652/16504)
Row 15906831 (NC_000003.11:15482996::T 79/16504)...

- Apr 27, 2021 (155)
81 8.3KJPN

Submission ignored due to conflicting rows:
Row 15906829 (NC_000003.11:15482996:T: 5140/16504)
Row 15906830 (NC_000003.11:15482996:TT: 652/16504)
Row 15906831 (NC_000003.11:15482996::T 79/16504)...

- Apr 27, 2021 (155)
82 8.3KJPN

Submission ignored due to conflicting rows:
Row 15906829 (NC_000003.11:15482996:T: 5140/16504)
Row 15906830 (NC_000003.11:15482996:TT: 652/16504)
Row 15906831 (NC_000003.11:15482996::T 79/16504)...

- Apr 27, 2021 (155)
83 14KJPN

Submission ignored due to conflicting rows:
Row 23083212 (NC_000003.12:15441489:T: 10790/28190)
Row 23083213 (NC_000003.12:15441489:TT: 1346/28190)
Row 23083214 (NC_000003.12:15441489:TTTTTTT: 6/28190)...

- Oct 13, 2022 (156)
84 14KJPN

Submission ignored due to conflicting rows:
Row 23083212 (NC_000003.12:15441489:T: 10790/28190)
Row 23083213 (NC_000003.12:15441489:TT: 1346/28190)
Row 23083214 (NC_000003.12:15441489:TTTTTTT: 6/28190)...

- Oct 13, 2022 (156)
85 14KJPN

Submission ignored due to conflicting rows:
Row 23083212 (NC_000003.12:15441489:T: 10790/28190)
Row 23083213 (NC_000003.12:15441489:TT: 1346/28190)
Row 23083214 (NC_000003.12:15441489:TTTTTTT: 6/28190)...

- Oct 13, 2022 (156)
86 14KJPN

Submission ignored due to conflicting rows:
Row 23083212 (NC_000003.12:15441489:T: 10790/28190)
Row 23083213 (NC_000003.12:15441489:TT: 1346/28190)
Row 23083214 (NC_000003.12:15441489:TTTTTTT: 6/28190)...

- Oct 13, 2022 (156)
87 14KJPN

Submission ignored due to conflicting rows:
Row 23083212 (NC_000003.12:15441489:T: 10790/28190)
Row 23083213 (NC_000003.12:15441489:TT: 1346/28190)
Row 23083214 (NC_000003.12:15441489:TTTTTTT: 6/28190)...

- Oct 13, 2022 (156)
88 UK 10K study - Twins

Submission ignored due to conflicting rows:
Row 7805809 (NC_000003.11:15482997:T: 1939/3708)
Row 7805810 (NC_000003.11:15482996:TTT: 1156/3708)

- Oct 12, 2018 (152)
89 UK 10K study - Twins

Submission ignored due to conflicting rows:
Row 7805809 (NC_000003.11:15482997:T: 1939/3708)
Row 7805810 (NC_000003.11:15482996:TTT: 1156/3708)

- Oct 12, 2018 (152)
90 ALFA NC_000003.12 - 15441490 Apr 27, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs34923485 May 11, 2012 (137)
rs60043155 May 11, 2012 (137)
rs71895096 May 11, 2012 (137)
rs72329068 May 11, 2012 (137)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT

(self)
ss4066364358 NC_000003.12:15441489:TTTTTTTTTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT

(self)
ss4066364357 NC_000003.12:15441489:TTTTTTTTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT

(self)
ss4066364356 NC_000003.12:15441489:TTTTTTTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT

(self)
ss4066364355 NC_000003.12:15441489:TTTTTTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT

(self)
ss5157937526 NC_000003.11:15482996:TTTTTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT

(self)
ss5689246112 NC_000003.12:15441489:TTTTTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT

8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT

(self)
ss5157937525 NC_000003.11:15482996:TTTTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT

(self)
ss4066364354, ss5689246110 NC_000003.12:15441489:TTTTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT

(self)
ss2991879525 NC_000003.11:15482996:TTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT

(self)
ss4066364353 NC_000003.12:15441489:TTTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT

(self)
ss4066364352 NC_000003.12:15441489:TTTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT

(self)
ss1703523778, ss1703523785, ss5825388451 NC_000003.11:15482996:TTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT

(self)
ss3065868718, ss4066364351, ss5253156480, ss5452645631 NC_000003.12:15441489:TTT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT

(self)
ss1997155397, ss5157937523, ss5825388450 NC_000003.11:15482996:TT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

(self)
ss1710068707, ss1710068720 NC_000003.11:15482997:TT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

(self)
ss4066364350, ss5253156478, ss5452645630, ss5689246109 NC_000003.12:15441489:TT: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

(self)
ss80390972 NC_000003.9:15458021:T: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss295089364 NC_000003.10:15458000:T: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss295089365 NC_000003.10:15458021:T: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss5157937522 NC_000003.11:15482996:T: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
NC_000003.11:15482997:T: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss5452645629, ss5689246108 NC_000003.12:15441489:T: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss41994670 NT_022517.18:15422996:T: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss95310989 NT_022517.18:15423017:T: NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss3827677140, ss5157937524 NC_000003.11:15482996::T NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364337, ss5253156479, ss5689246111 NC_000003.12:15441489::T NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364338 NC_000003.12:15441489::TT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364339 NC_000003.12:15441489::TTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364340 NC_000003.12:15441489::TTTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364341 NC_000003.12:15441489::TTTTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364342 NC_000003.12:15441489::TTTTTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364343 NC_000003.12:15441489::TTTTTTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364344 NC_000003.12:15441489::TTTTTTTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364345 NC_000003.12:15441489::TTTTTTTTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364346 NC_000003.12:15441489::TTTTTTTTTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364347 NC_000003.12:15441489::TTTTTTTTTTT NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364348 NC_000003.12:15441489::TTTTTTTTTTT…

NC_000003.12:15441489::TTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
8008995102 NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss4066364349 NC_000003.12:15441489::TTTTTTTTTTT…

NC_000003.12:15441489::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000003.12:15441489:TTTTTTTTTTTT…

NC_000003.12:15441489:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs11343442

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d