Name: rs11340280
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs11340280

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr9:116694628-116694644 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₈ / delTTT / delTT / delT / …
del(T)₈ / delTTT / delTT / delT / dupT / dupTT / dup(T)₅
Variation Type: Indel Insertion and Deletion
Frequency: delT=0.3142 (2073/6598, ALFA)
(T)₁₇=0.3650 (1828/5008, 1000G)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: ASTN2 : Intron Variant
TRIM32 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	6598	TTTTTTTTTTTTTTTTT=0.6851	TTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.3142, TTTTTTTTTTTTTTTTTTTTTT=0.0005, TTTTTTTTTTTTTTTTTT=0.0003, TTTTTTTTTTTTTTTTTTT=0.0000	0.534001	0.162417	0.303582	32
European	Sub	6044	TTTTTTTTTTTTTTTTT=0.6565	TTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.3427, TTTTTTTTTTTTTTTTTTTTTT=0.0005, TTTTTTTTTTTTTTTTTT=0.0003, TTTTTTTTTTTTTTTTTTT=0.0000	0.491879	0.177328	0.330792	32
African	Sub	366	TTTTTTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
African Others	Sub	26	TTTTTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	340	TTTTTTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Asian	Sub	6	TTTTTTTTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
East Asian	Sub	6	TTTTTTTTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Other Asian	Sub	0	TTTTTTTTTTTTTTTTT=0	TTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTT=0	0	0	0	N/A
Latin American 1	Sub	12	TTTTTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	72	TTTTTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
South Asian	Sub	10	TTTTTTTTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Other	Sub	88	TTTTTTTTTTTTTTTTT=0.98	TTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.02, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00	0.954545	0.0	0.045455	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	6598	(T)₁₇=0.6851	del(T)₈=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.3142, dupT=0.0003, dupTT=0.0000, dup(T)₅=0.0005
Allele Frequency Aggregator	European	Sub	6044	(T)₁₇=0.6565	del(T)₈=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.3427, dupT=0.0003, dupTT=0.0000, dup(T)₅=0.0005
Allele Frequency Aggregator	African	Sub	366	(T)₁₇=1.000	del(T)₈=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dup(T)₅=0.000
Allele Frequency Aggregator	Other	Sub	88	(T)₁₇=0.98	del(T)₈=0.00, delTTT=0.00, delTT=0.00, delT=0.02, dupT=0.00, dupTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	Latin American 2	Sub	72	(T)₁₇=1.00	del(T)₈=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	Latin American 1	Sub	12	(T)₁₇=1.00	del(T)₈=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	South Asian	Sub	10	(T)₁₇=1.0	del(T)₈=0.0, delTTT=0.0, delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dup(T)₅=0.0
Allele Frequency Aggregator	Asian	Sub	6	(T)₁₇=1.0	del(T)₈=0.0, delTTT=0.0, delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dup(T)₅=0.0
1000Genomes	Global	Study-wide	5008	(T)₁₇=0.3650	delT=0.6350
1000Genomes	African	Sub	1322	(T)₁₇=0.4213	delT=0.5787
1000Genomes	East Asian	Sub	1008	(T)₁₇=0.3433	delT=0.6567
1000Genomes	Europe	Sub	1006	(T)₁₇=0.4533	delT=0.5467
1000Genomes	South Asian	Sub	978	(T)₁₇=0.257	delT=0.743
1000Genomes	American	Sub	694	(T)₁₇=0.314	delT=0.686

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 9	NC_000009.12:g.116694637_116694644del
GRCh38.p14 chr 9	NC_000009.12:g.116694642_116694644del
GRCh38.p14 chr 9	NC_000009.12:g.116694643_116694644del
GRCh38.p14 chr 9	NC_000009.12:g.116694644del
GRCh38.p14 chr 9	NC_000009.12:g.116694644dup
GRCh38.p14 chr 9	NC_000009.12:g.116694643_116694644dup
GRCh38.p14 chr 9	NC_000009.12:g.116694640_116694644dup
GRCh37.p13 chr 9	NC_000009.11:g.119456916_119456923del
GRCh37.p13 chr 9	NC_000009.11:g.119456921_119456923del
GRCh37.p13 chr 9	NC_000009.11:g.119456922_119456923del
GRCh37.p13 chr 9	NC_000009.11:g.119456923del
GRCh37.p13 chr 9	NC_000009.11:g.119456923dup
GRCh37.p13 chr 9	NC_000009.11:g.119456922_119456923dup
GRCh37.p13 chr 9	NC_000009.11:g.119456919_119456923dup
ASTN2 RefSeqGene	NG_021409.2:g.725423_725430del
ASTN2 RefSeqGene	NG_021409.2:g.725428_725430del
ASTN2 RefSeqGene	NG_021409.2:g.725429_725430del
ASTN2 RefSeqGene	NG_021409.2:g.725430del
ASTN2 RefSeqGene	NG_021409.2:g.725430dup
ASTN2 RefSeqGene	NG_021409.2:g.725429_725430dup
ASTN2 RefSeqGene	NG_021409.2:g.725426_725430dup
TRIM32 RefSeqGene (LRG_211)	NG_011619.1:g.12336_12343del
TRIM32 RefSeqGene (LRG_211)	NG_011619.1:g.12341_12343del
TRIM32 RefSeqGene (LRG_211)	NG_011619.1:g.12342_12343del
TRIM32 RefSeqGene (LRG_211)	NG_011619.1:g.12343del
TRIM32 RefSeqGene (LRG_211)	NG_011619.1:g.12343dup
TRIM32 RefSeqGene (LRG_211)	NG_011619.1:g.12342_12343dup
TRIM32 RefSeqGene (LRG_211)	NG_011619.1:g.12339_12343dup

Gene: TRIM32, tripartite motif containing 32 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
TRIM32 transcript variant 2	NM_001099679.2:c.-78-3028… NM_001099679.2:c.-78-3028_-78-3021del	N/A	Intron Variant
TRIM32 transcript variant 3	NM_001379048.1:c.-142-273… NM_001379048.1:c.-142-2736_-142-2729del	N/A	Intron Variant
TRIM32 transcript variant 4	NM_001379049.1:c.-81-3025… NM_001379049.1:c.-81-3025_-81-3018del	N/A	Intron Variant
TRIM32 transcript variant 5	NM_001379050.1:c.-78-3028… NM_001379050.1:c.-78-3028_-78-3021del	N/A	Intron Variant
TRIM32 transcript variant 1	NM_012210.4:c.-81-3025_-8… NM_012210.4:c.-81-3025_-81-3018del	N/A	Intron Variant

Gene: ASTN2, astrotactin 2 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ASTN2 transcript variant 7	NM_001365068.1:c.2806+311… NM_001365068.1:c.2806+31136_2806+31143del	N/A	Intron Variant
ASTN2 transcript variant 8	NM_001365069.1:c.2794+311… NM_001365069.1:c.2794+31136_2794+31143del	N/A	Intron Variant
ASTN2 transcript variant 1	NM_014010.5:c.2653+31136_… NM_014010.5:c.2653+31136_2653+31143del	N/A	Intron Variant
ASTN2 transcript variant 5	NM_001184734.1:c.	N/A	Genic Upstream Transcript Variant
ASTN2 transcript variant 6	NM_001184735.1:c.	N/A	Genic Upstream Transcript Variant
ASTN2 transcript variant 2	NM_198186.3:c.	N/A	Genic Upstream Transcript Variant
ASTN2 transcript variant 3	NM_198187.3:c.	N/A	Genic Upstream Transcript Variant
ASTN2 transcript variant 4	NM_198188.2:c.	N/A	Genic Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₇=	del(T)₈	delTTT	delTT	delT	dupT	dupTT	dup(T)₅
GRCh38.p14 chr 9	NC_000009.12:g.116694628_116694644=	NC_000009.12:g.116694637_116694644del	NC_000009.12:g.116694642_116694644del	NC_000009.12:g.116694643_116694644del	NC_000009.12:g.116694644del	NC_000009.12:g.116694644dup	NC_000009.12:g.116694643_116694644dup	NC_000009.12:g.116694640_116694644dup
GRCh37.p13 chr 9	NC_000009.11:g.119456907_119456923=	NC_000009.11:g.119456916_119456923del	NC_000009.11:g.119456921_119456923del	NC_000009.11:g.119456922_119456923del	NC_000009.11:g.119456923del	NC_000009.11:g.119456923dup	NC_000009.11:g.119456922_119456923dup	NC_000009.11:g.119456919_119456923dup
ASTN2 RefSeqGene	NG_021409.2:g.725414_725430=	NG_021409.2:g.725423_725430del	NG_021409.2:g.725428_725430del	NG_021409.2:g.725429_725430del	NG_021409.2:g.725430del	NG_021409.2:g.725430dup	NG_021409.2:g.725429_725430dup	NG_021409.2:g.725426_725430dup
TRIM32 RefSeqGene (LRG_211)	NG_011619.1:g.12327_12343=	NG_011619.1:g.12336_12343del	NG_011619.1:g.12341_12343del	NG_011619.1:g.12342_12343del	NG_011619.1:g.12343del	NG_011619.1:g.12343dup	NG_011619.1:g.12342_12343dup	NG_011619.1:g.12339_12343dup
TRIM32 transcript variant 2	NM_001099679.1:c.-78-3037=	NM_001099679.1:c.-78-3028_-78-3021del	NM_001099679.1:c.-78-3023_-78-3021del	NM_001099679.1:c.-78-3022_-78-3021del	NM_001099679.1:c.-78-3021del	NM_001099679.1:c.-78-3021dup	NM_001099679.1:c.-78-3022_-78-3021dup	NM_001099679.1:c.-78-3025_-78-3021dup
TRIM32 transcript variant 2	NM_001099679.2:c.-78-3037=	NM_001099679.2:c.-78-3028_-78-3021del	NM_001099679.2:c.-78-3023_-78-3021del	NM_001099679.2:c.-78-3022_-78-3021del	NM_001099679.2:c.-78-3021del	NM_001099679.2:c.-78-3021dup	NM_001099679.2:c.-78-3022_-78-3021dup	NM_001099679.2:c.-78-3025_-78-3021dup
ASTN2 transcript variant 7	NM_001365068.1:c.2806+31143=	NM_001365068.1:c.2806+31136_2806+31143del	NM_001365068.1:c.2806+31141_2806+31143del	NM_001365068.1:c.2806+31142_2806+31143del	NM_001365068.1:c.2806+31143del	NM_001365068.1:c.2806+31143dup	NM_001365068.1:c.2806+31142_2806+31143dup	NM_001365068.1:c.2806+31139_2806+31143dup
ASTN2 transcript variant 8	NM_001365069.1:c.2794+31143=	NM_001365069.1:c.2794+31136_2794+31143del	NM_001365069.1:c.2794+31141_2794+31143del	NM_001365069.1:c.2794+31142_2794+31143del	NM_001365069.1:c.2794+31143del	NM_001365069.1:c.2794+31143dup	NM_001365069.1:c.2794+31142_2794+31143dup	NM_001365069.1:c.2794+31139_2794+31143dup
TRIM32 transcript variant 3	NM_001379048.1:c.-142-2745=	NM_001379048.1:c.-142-2736_-142-2729del	NM_001379048.1:c.-142-2731_-142-2729del	NM_001379048.1:c.-142-2730_-142-2729del	NM_001379048.1:c.-142-2729del	NM_001379048.1:c.-142-2729dup	NM_001379048.1:c.-142-2730_-142-2729dup	NM_001379048.1:c.-142-2733_-142-2729dup
TRIM32 transcript variant 4	NM_001379049.1:c.-81-3034=	NM_001379049.1:c.-81-3025_-81-3018del	NM_001379049.1:c.-81-3020_-81-3018del	NM_001379049.1:c.-81-3019_-81-3018del	NM_001379049.1:c.-81-3018del	NM_001379049.1:c.-81-3018dup	NM_001379049.1:c.-81-3019_-81-3018dup	NM_001379049.1:c.-81-3022_-81-3018dup
TRIM32 transcript variant 5	NM_001379050.1:c.-78-3037=	NM_001379050.1:c.-78-3028_-78-3021del	NM_001379050.1:c.-78-3023_-78-3021del	NM_001379050.1:c.-78-3022_-78-3021del	NM_001379050.1:c.-78-3021del	NM_001379050.1:c.-78-3021dup	NM_001379050.1:c.-78-3022_-78-3021dup	NM_001379050.1:c.-78-3025_-78-3021dup
TRIM32 transcript variant 1	NM_012210.3:c.-81-3034=	NM_012210.3:c.-81-3025_-81-3018del	NM_012210.3:c.-81-3020_-81-3018del	NM_012210.3:c.-81-3019_-81-3018del	NM_012210.3:c.-81-3018del	NM_012210.3:c.-81-3018dup	NM_012210.3:c.-81-3019_-81-3018dup	NM_012210.3:c.-81-3022_-81-3018dup
TRIM32 transcript variant 1	NM_012210.4:c.-81-3034=	NM_012210.4:c.-81-3025_-81-3018del	NM_012210.4:c.-81-3020_-81-3018del	NM_012210.4:c.-81-3019_-81-3018del	NM_012210.4:c.-81-3018del	NM_012210.4:c.-81-3018dup	NM_012210.4:c.-81-3019_-81-3018dup	NM_012210.4:c.-81-3022_-81-3018dup
ASTN2 transcript variant 1	NM_014010.4:c.2653+31143=	NM_014010.4:c.2653+31136_2653+31143del	NM_014010.4:c.2653+31141_2653+31143del	NM_014010.4:c.2653+31142_2653+31143del	NM_014010.4:c.2653+31143del	NM_014010.4:c.2653+31143dup	NM_014010.4:c.2653+31142_2653+31143dup	NM_014010.4:c.2653+31139_2653+31143dup
ASTN2 transcript variant 1	NM_014010.5:c.2653+31143=	NM_014010.5:c.2653+31136_2653+31143del	NM_014010.5:c.2653+31141_2653+31143del	NM_014010.5:c.2653+31142_2653+31143del	NM_014010.5:c.2653+31143del	NM_014010.5:c.2653+31143dup	NM_014010.5:c.2653+31142_2653+31143dup	NM_014010.5:c.2653+31139_2653+31143dup
TRIM32 transcript variant X1	XM_005251813.1:c.-81-3034=	XM_005251813.1:c.-81-3025_-81-3018del	XM_005251813.1:c.-81-3020_-81-3018del	XM_005251813.1:c.-81-3019_-81-3018del	XM_005251813.1:c.-81-3018del	XM_005251813.1:c.-81-3018dup	XM_005251813.1:c.-81-3019_-81-3018dup	XM_005251813.1:c.-81-3022_-81-3018dup
TRIM32 transcript variant X2	XM_005251814.1:c.-81-3034=	XM_005251814.1:c.-81-3025_-81-3018del	XM_005251814.1:c.-81-3020_-81-3018del	XM_005251814.1:c.-81-3019_-81-3018del	XM_005251814.1:c.-81-3018del	XM_005251814.1:c.-81-3018dup	XM_005251814.1:c.-81-3019_-81-3018dup	XM_005251814.1:c.-81-3022_-81-3018dup
ASTN2 transcript variant X1	XM_005251844.1:c.2806+31143=	XM_005251844.1:c.2806+31136_2806+31143del	XM_005251844.1:c.2806+31141_2806+31143del	XM_005251844.1:c.2806+31142_2806+31143del	XM_005251844.1:c.2806+31143del	XM_005251844.1:c.2806+31143dup	XM_005251844.1:c.2806+31142_2806+31143dup	XM_005251844.1:c.2806+31139_2806+31143dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

39 SubSNP, 14 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss77971340	Sep 08, 2015 (146)
2	SSMP	ss663895566	Apr 01, 2015 (144)
3	SSIP	ss947246950	Aug 21, 2014 (142)
4	1000GENOMES	ss1368703000	Aug 21, 2014 (142)
5	HAMMER_LAB	ss1806140671	Sep 08, 2015 (146)
6	SYSTEMSBIOZJU	ss2627389950	Nov 08, 2017 (151)
7	SWEGEN	ss3005514439	Nov 08, 2017 (151)
8	MCHAISSO	ss3064350783	Nov 08, 2017 (151)
9	MCHAISSO	ss3065243611	Nov 08, 2017 (151)
10	MCHAISSO	ss3066267024	Nov 08, 2017 (151)
11	EVA_DECODE	ss3724657435	Jul 13, 2019 (153)
12	EVA_DECODE	ss3724657436	Jul 13, 2019 (153)
13	EVA_DECODE	ss3724657437	Jul 13, 2019 (153)
14	KHV_HUMAN_GENOMES	ss3812797880	Jul 13, 2019 (153)
15	EVA	ss3831837133	Apr 26, 2020 (154)
16	EVA	ss3839447805	Apr 26, 2020 (154)
17	EVA	ss3844912377	Apr 26, 2020 (154)
18	GNOMAD	ss4208584950	Apr 26, 2021 (155)
19	GNOMAD	ss4208584951	Apr 26, 2021 (155)
20	GNOMAD	ss4208584952	Apr 26, 2021 (155)
21	GNOMAD	ss4208584953	Apr 26, 2021 (155)
22	GNOMAD	ss4208584954	Apr 26, 2021 (155)
23	GNOMAD	ss4208584955	Apr 26, 2021 (155)
24	GNOMAD	ss4208584956	Apr 26, 2021 (155)
25	TOMMO_GENOMICS	ss5195076282	Apr 26, 2021 (155)
26	TOMMO_GENOMICS	ss5195076283	Apr 26, 2021 (155)
27	1000G_HIGH_COVERAGE	ss5282012139	Oct 16, 2022 (156)
28	1000G_HIGH_COVERAGE	ss5282012140	Oct 16, 2022 (156)
29	1000G_HIGH_COVERAGE	ss5282012141	Oct 16, 2022 (156)
30	HUGCELL_USP	ss5477897430	Oct 16, 2022 (156)
31	HUGCELL_USP	ss5477897431	Oct 16, 2022 (156)
32	HUGCELL_USP	ss5477897432	Oct 16, 2022 (156)
33	HUGCELL_USP	ss5477897433	Oct 16, 2022 (156)
34	TOMMO_GENOMICS	ss5739539695	Oct 16, 2022 (156)
35	TOMMO_GENOMICS	ss5739539696	Oct 16, 2022 (156)
36	TOMMO_GENOMICS	ss5739539697	Oct 16, 2022 (156)
37	EVA	ss5829684425	Oct 16, 2022 (156)
38	EVA	ss5829684426	Oct 16, 2022 (156)
39	EVA	ss5856916843	Oct 16, 2022 (156)
40	1000Genomes	NC_000009.11 - 119456907	Oct 12, 2018 (152)
41	gnomAD - Genomes Submission ignored due to conflicting rows: Row 336240231 (NC_000009.12:116694627::T 498/117640) Row 336240232 (NC_000009.12:116694627::TT 21/117648) Row 336240233 (NC_000009.12:116694627::TTTTT 3/117650)...	-	Apr 26, 2021 (155)
42	gnomAD - Genomes Submission ignored due to conflicting rows: Row 336240231 (NC_000009.12:116694627::T 498/117640) Row 336240232 (NC_000009.12:116694627::TT 21/117648) Row 336240233 (NC_000009.12:116694627::TTTTT 3/117650)...	-	Apr 26, 2021 (155)
43	gnomAD - Genomes Submission ignored due to conflicting rows: Row 336240231 (NC_000009.12:116694627::T 498/117640) Row 336240232 (NC_000009.12:116694627::TT 21/117648) Row 336240233 (NC_000009.12:116694627::TTTTT 3/117650)...	-	Apr 26, 2021 (155)
44	gnomAD - Genomes Submission ignored due to conflicting rows: Row 336240231 (NC_000009.12:116694627::T 498/117640) Row 336240232 (NC_000009.12:116694627::TT 21/117648) Row 336240233 (NC_000009.12:116694627::TTTTT 3/117650)...	-	Apr 26, 2021 (155)
45	gnomAD - Genomes Submission ignored due to conflicting rows: Row 336240231 (NC_000009.12:116694627::T 498/117640) Row 336240232 (NC_000009.12:116694627::TT 21/117648) Row 336240233 (NC_000009.12:116694627::TTTTT 3/117650)...	-	Apr 26, 2021 (155)
46	gnomAD - Genomes Submission ignored due to conflicting rows: Row 336240231 (NC_000009.12:116694627::T 498/117640) Row 336240232 (NC_000009.12:116694627::TT 21/117648) Row 336240233 (NC_000009.12:116694627::TTTTT 3/117650)...	-	Apr 26, 2021 (155)
47	gnomAD - Genomes Submission ignored due to conflicting rows: Row 336240231 (NC_000009.12:116694627::T 498/117640) Row 336240232 (NC_000009.12:116694627::TT 21/117648) Row 336240233 (NC_000009.12:116694627::TTTTT 3/117650)...	-	Apr 26, 2021 (155)
48	8.3KJPN Submission ignored due to conflicting rows: Row 53045589 (NC_000009.11:119456906:T: 11330/16742) Row 53045590 (NC_000009.11:119456906::T 4/16742)	-	Apr 26, 2021 (155)
49	8.3KJPN Submission ignored due to conflicting rows: Row 53045589 (NC_000009.11:119456906:T: 11330/16742) Row 53045590 (NC_000009.11:119456906::T 4/16742)	-	Apr 26, 2021 (155)
50	14KJPN Submission ignored due to conflicting rows: Row 73376799 (NC_000009.12:116694627:T: 17779/27600) Row 73376800 (NC_000009.12:116694627:TT: 18/27600) Row 73376801 (NC_000009.12:116694627::T 6/27600)	-	Oct 16, 2022 (156)
51	14KJPN Submission ignored due to conflicting rows: Row 73376799 (NC_000009.12:116694627:T: 17779/27600) Row 73376800 (NC_000009.12:116694627:TT: 18/27600) Row 73376801 (NC_000009.12:116694627::T 6/27600)	-	Oct 16, 2022 (156)
52	14KJPN Submission ignored due to conflicting rows: Row 73376799 (NC_000009.12:116694627:T: 17779/27600) Row 73376800 (NC_000009.12:116694627:TT: 18/27600) Row 73376801 (NC_000009.12:116694627::T 6/27600)	-	Oct 16, 2022 (156)
53	ALFA	NC_000009.12 - 116694628	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs11346982	May 11, 2012 (137)
rs34547322	May 23, 2006 (127)
rs35083407	May 23, 2006 (127)
rs375536293	May 13, 2013 (138)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4208584956, ss5477897433	NC_000009.12:116694627:TTTTTTTT:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTT	(self)
11988038141	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTT	(self)
ss4208584955	NC_000009.12:116694627:TTT:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
11988038141	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss5829684426	NC_000009.11:119456906:TT:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT
ss3724657435, ss4208584954, ss5282012140, ss5477897430, ss5739539696	NC_000009.12:116694627:TT:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
11988038141	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss77971340	NC_000009.9:116536476:T:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
47575886, ss663895566, ss1368703000, ss1806140671, ss2627389950, ss3005514439, ss3831837133, ss3839447805, ss5195076282, ss5829684425	NC_000009.11:119456906:T:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss947246950	NC_000009.11:119456907:T:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3064350783, ss3065243611, ss3066267024, ss3812797880, ss3844912377, ss4208584953, ss5282012139, ss5477897431, ss5739539695, ss5856916843	NC_000009.12:116694627:T:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
11988038141	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3724657436	NC_000009.12:116694628:T:	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss5195076283	NC_000009.11:119456906::T	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss4208584950, ss5282012141, ss5477897432, ss5739539697	NC_000009.12:116694627::T	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
11988038141	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss3724657437	NC_000009.12:116694629::T	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)
ss4208584951	NC_000009.12:116694627::TT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
11988038141	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss4208584952	NC_000009.12:116694627::TTTTT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT	(self)
11988038141	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT	NC_000009.12:116694627:TTTTTTTTTTT… NC_000009.12:116694627:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs11340280

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs11340280