Name: rs11292399
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs11292399

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr1:147559129-147559140 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₆ / delTT / delT / dupT / du…
del(T)₆ / delTT / delT / dupT / dupTT / dupTTT
Variation Type: Indel Insertion and Deletion
Frequency: (T)₁₂=0.3820 (2045/5354, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: BCL9 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	5354	TTTTTTTTTTTT=0.3820	TTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.6164, TTTTTTTTTTTTTT=0.0017, TTTTTTTTTTTTTTT=0.0000	0.245127	0.479385	0.275487	32
European	Sub	4990	TTTTTTTTTTTT=0.3383	TTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.6599, TTTTTTTTTTTTTT=0.0018, TTTTTTTTTTTTTTT=0.0000	0.191472	0.513274	0.295253	32
African	Sub	256	TTTTTTTTTTTT=1.000	TTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
African Others	Sub	18	TTTTTTTTTTTT=1.00	TTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	238	TTTTTTTTTTTT=1.000	TTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Asian	Sub	12	TTTTTTTTTTTT=1.00	TTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	12	TTTTTTTTTTTT=1.00	TTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	0	TTTTTTTTTTTT=0	TTTTTT=0, TTTTTTTTTTT=0, TTTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0	0	0	0	N/A
Latin American 1	Sub	20	TTTTTTTTTTTT=1.00	TTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	32	TTTTTTTTTTTT=1.00	TTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
South Asian	Sub	0	TTTTTTTTTTTT=0	TTTTTT=0, TTTTTTTTTTT=0, TTTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0	0	0	0	N/A
Other	Sub	44	TTTTTTTTTTTT=0.84	TTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.16, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	0.818182	0.136364	0.045455	9

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	5354	(T)₁₂=0.3820	del(T)₆=0.0000, delT=0.0000, dupT=0.6164, dupTT=0.0017, dupTTT=0.0000
Allele Frequency Aggregator	European	Sub	4990	(T)₁₂=0.3383	del(T)₆=0.0000, delT=0.0000, dupT=0.6599, dupTT=0.0018, dupTTT=0.0000
Allele Frequency Aggregator	African	Sub	256	(T)₁₂=1.000	del(T)₆=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	44	(T)₁₂=0.84	del(T)₆=0.00, delT=0.00, dupT=0.16, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Latin American 2	Sub	32	(T)₁₂=1.00	del(T)₆=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Latin American 1	Sub	20	(T)₁₂=1.00	del(T)₆=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Asian	Sub	12	(T)₁₂=1.00	del(T)₆=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	South Asian	Sub	0	(T)₁₂=0	del(T)₆=0, delT=0, dupT=0, dupTT=0, dupTTT=0

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 1	NC_000001.11:g.147559135_147559140del
GRCh38.p14 chr 1	NC_000001.11:g.147559139_147559140del
GRCh38.p14 chr 1	NC_000001.11:g.147559140del
GRCh38.p14 chr 1	NC_000001.11:g.147559140dup
GRCh38.p14 chr 1	NC_000001.11:g.147559139_147559140dup
GRCh38.p14 chr 1	NC_000001.11:g.147559138_147559140dup
GRCh37.p13 chr 1 fix patch HG1287_PATCH	NW_003871055.3:g.4374548_4374553del
GRCh37.p13 chr 1 fix patch HG1287_PATCH	NW_003871055.3:g.4374552_4374553del
GRCh37.p13 chr 1 fix patch HG1287_PATCH	NW_003871055.3:g.4374553del
GRCh37.p13 chr 1 fix patch HG1287_PATCH	NW_003871055.3:g.4374553dup
GRCh37.p13 chr 1 fix patch HG1287_PATCH	NW_003871055.3:g.4374552_4374553dup
GRCh37.p13 chr 1 fix patch HG1287_PATCH	NW_003871055.3:g.4374551_4374553dup
GRCh37.p13 chr 1	NC_000001.10:g.147030912_147030917del
GRCh37.p13 chr 1	NC_000001.10:g.147030916_147030917del
GRCh37.p13 chr 1	NC_000001.10:g.147030917del
GRCh37.p13 chr 1	NC_000001.10:g.147030917dup
GRCh37.p13 chr 1	NC_000001.10:g.147030916_147030917dup
GRCh37.p13 chr 1	NC_000001.10:g.147030915_147030917dup

Gene: BCL9, BCL9 transcription coactivator (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
BCL9 transcript	NM_004326.4:c.-478+17461_… NM_004326.4:c.-478+17461_-478+17466del	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₂=	del(T)₆	delTT	delT	dupT	dupTT	dupTTT
GRCh38.p14 chr 1	NC_000001.11:g.147559129_147559140=	NC_000001.11:g.147559135_147559140del	NC_000001.11:g.147559139_147559140del	NC_000001.11:g.147559140del	NC_000001.11:g.147559140dup	NC_000001.11:g.147559139_147559140dup	NC_000001.11:g.147559138_147559140dup
GRCh37.p13 chr 1 fix patch HG1287_PATCH	NW_003871055.3:g.4374542_4374553=	NW_003871055.3:g.4374548_4374553del	NW_003871055.3:g.4374552_4374553del	NW_003871055.3:g.4374553del	NW_003871055.3:g.4374553dup	NW_003871055.3:g.4374552_4374553dup	NW_003871055.3:g.4374551_4374553dup
GRCh37.p13 chr 1	NC_000001.10:g.147030905_147030917=	NC_000001.10:g.147030912_147030917del	NC_000001.10:g.147030916_147030917del	NC_000001.10:g.147030917del	NC_000001.10:g.147030917dup	NC_000001.10:g.147030916_147030917dup	NC_000001.10:g.147030915_147030917dup
BCL9 transcript	NM_004326.3:c.-478+17461=	NM_004326.3:c.-478+17468_-478+17473del	NM_004326.3:c.-478+17472_-478+17473del	NM_004326.3:c.-478+17473del	NM_004326.3:c.-478+17473dup	NM_004326.3:c.-478+17472_-478+17473dup	NM_004326.3:c.-478+17471_-478+17473dup
BCL9 transcript	NM_004326.4:c.-478+17455=	NM_004326.4:c.-478+17461_-478+17466del	NM_004326.4:c.-478+17465_-478+17466del	NM_004326.4:c.-478+17466del	NM_004326.4:c.-478+17466dup	NM_004326.4:c.-478+17465_-478+17466dup	NM_004326.4:c.-478+17464_-478+17466dup
BCL9 transcript variant X2	XM_005272972.1:c.-478+17461=	XM_005272972.1:c.-478+17468_-478+17473del	XM_005272972.1:c.-478+17472_-478+17473del	XM_005272972.1:c.-478+17473del	XM_005272972.1:c.-478+17473dup	XM_005272972.1:c.-478+17472_-478+17473dup	XM_005272972.1:c.-478+17471_-478+17473dup
BCL9 transcript variant X3	XM_005272973.1:c.-478+17461=	XM_005272973.1:c.-478+17468_-478+17473del	XM_005272973.1:c.-478+17472_-478+17473del	XM_005272973.1:c.-478+17473del	XM_005272973.1:c.-478+17473dup	XM_005272973.1:c.-478+17472_-478+17473dup	XM_005272973.1:c.-478+17471_-478+17473dup
BCL9 transcript variant X2	XM_005277417.1:c.-478+17455=	XM_005277417.1:c.-478+17461_-478+17466del	XM_005277417.1:c.-478+17465_-478+17466del	XM_005277417.1:c.-478+17466del	XM_005277417.1:c.-478+17466dup	XM_005277417.1:c.-478+17465_-478+17466dup	XM_005277417.1:c.-478+17464_-478+17466dup
BCL9 transcript variant X3	XM_005277418.1:c.-478+17455=	XM_005277418.1:c.-478+17461_-478+17466del	XM_005277418.1:c.-478+17465_-478+17466del	XM_005277418.1:c.-478+17466del	XM_005277418.1:c.-478+17466dup	XM_005277418.1:c.-478+17465_-478+17466dup	XM_005277418.1:c.-478+17464_-478+17466dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

59 SubSNP, 16 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss81703546	Apr 09, 2015 (144)
2	GMI	ss288036891	May 04, 2012 (137)
3	1000GENOMES	ss498990585	May 04, 2012 (137)
4	1000GENOMES	ss498990589	May 04, 2012 (137)
5	LUNTER	ss550994269	Apr 25, 2013 (138)
6	SSMP	ss663118638	Apr 09, 2015 (144)
7	1000GENOMES	ss1367840639	Aug 28, 2014 (142)
8	1000GENOMES	ss1367840640	Aug 28, 2014 (142)
9	EVA_GENOME_DK	ss1574019984	Apr 09, 2015 (144)
10	EVA_UK10K_TWINSUK	ss1701203144	Apr 09, 2015 (144)
11	EVA_UK10K_TWINSUK	ss1701203147	Apr 09, 2015 (144)
12	EVA_UK10K_ALSPAC	ss1701203245	Apr 09, 2015 (144)
13	EVA_UK10K_ALSPAC	ss1701203250	Apr 09, 2015 (144)
14	HAMMER_LAB	ss1795039861	Sep 11, 2015 (146)
15	GNOMAD	ss2760726171	Oct 11, 2018 (152)
16	GNOMAD	ss2760726175	Oct 11, 2018 (152)
17	SWEGEN	ss2987658484	Oct 11, 2018 (152)
18	MCHAISSO	ss3063607366	Jan 10, 2018 (151)
19	MCHAISSO	ss3064423185	Jan 10, 2018 (151)
20	MCHAISSO	ss3065326403	Jan 10, 2018 (151)
21	BIOINF_KMB_FNS_UNIBA	ss3645070553	Oct 11, 2018 (152)
22	URBANLAB	ss3646782804	Oct 11, 2018 (152)
23	EVA_DECODE	ss3687703650	Jul 12, 2019 (153)
24	EVA_DECODE	ss3687703651	Jul 12, 2019 (153)
25	EVA_DECODE	ss3687703652	Jul 12, 2019 (153)
26	ACPOP	ss3727453786	Jul 12, 2019 (153)
27	INMEGENXS	ss3745572046	Jul 12, 2019 (153)
28	KHV_HUMAN_GENOMES	ss3799765374	Jul 12, 2019 (153)
29	EVA	ss3826406732	Apr 25, 2020 (154)
30	EVA	ss3836596458	Apr 25, 2020 (154)
31	EVA	ss3842006431	Apr 25, 2020 (154)
32	KOGIC	ss3945553318	Apr 25, 2020 (154)
33	KOGIC	ss3945553319	Apr 25, 2020 (154)
34	GNOMAD	ss4002735385	Apr 25, 2021 (155)
35	GNOMAD	ss4002735386	Apr 25, 2021 (155)
36	GNOMAD	ss4002735387	Apr 25, 2021 (155)
37	GNOMAD	ss4002735389	Apr 25, 2021 (155)
38	GNOMAD	ss4002735390	Apr 25, 2021 (155)
39	GNOMAD	ss4002735391	Apr 25, 2021 (155)
40	TOMMO_GENOMICS	ss5146225352	Apr 25, 2021 (155)
41	TOMMO_GENOMICS	ss5146225353	Apr 25, 2021 (155)
42	TOMMO_GENOMICS	ss5146225354	Apr 25, 2021 (155)
43	1000G_HIGH_COVERAGE	ss5244131517	Oct 12, 2022 (156)
44	1000G_HIGH_COVERAGE	ss5244131518	Oct 12, 2022 (156)
45	1000G_HIGH_COVERAGE	ss5244131519	Oct 12, 2022 (156)
46	HUGCELL_USP	ss5444772288	Oct 12, 2022 (156)
47	SANFORD_IMAGENETICS	ss5626498862	Oct 12, 2022 (156)
48	SANFORD_IMAGENETICS	ss5626498863	Oct 12, 2022 (156)
49	TOMMO_GENOMICS	ss5673368346	Oct 12, 2022 (156)
50	TOMMO_GENOMICS	ss5673368348	Oct 12, 2022 (156)
51	TOMMO_GENOMICS	ss5673368349	Oct 12, 2022 (156)
52	TOMMO_GENOMICS	ss5673368350	Oct 12, 2022 (156)
53	YY_MCH	ss5801221808	Oct 12, 2022 (156)
54	EVA	ss5832604909	Oct 12, 2022 (156)
55	EVA	ss5849095999	Oct 12, 2022 (156)
56	EVA	ss5910100806	Oct 12, 2022 (156)
57	EVA	ss5938309450	Oct 12, 2022 (156)
58	EVA	ss5938309451	Oct 12, 2022 (156)
59	EVA	ss5938309452	Oct 12, 2022 (156)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 25715644 (NC_000001.11:147559128::T 91376/127448) Row 25715645 (NC_000001.11:147559128::TT 369/127524) Row 25715646 (NC_000001.11:147559128::TTT 7/127548)...	-	Apr 25, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 25715644 (NC_000001.11:147559128::T 91376/127448) Row 25715645 (NC_000001.11:147559128::TT 369/127524) Row 25715646 (NC_000001.11:147559128::TTT 7/127548)...	-	Apr 25, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 25715644 (NC_000001.11:147559128::T 91376/127448) Row 25715645 (NC_000001.11:147559128::TT 369/127524) Row 25715646 (NC_000001.11:147559128::TTT 7/127548)...	-	Apr 25, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 25715644 (NC_000001.11:147559128::T 91376/127448) Row 25715645 (NC_000001.11:147559128::TT 369/127524) Row 25715646 (NC_000001.11:147559128::TTT 7/127548)...	-	Apr 25, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 25715644 (NC_000001.11:147559128::T 91376/127448) Row 25715645 (NC_000001.11:147559128::TT 369/127524) Row 25715646 (NC_000001.11:147559128::TTT 7/127548)...	-	Apr 25, 2021 (155)
65	gnomAD - Genomes Submission ignored due to conflicting rows: Row 25715644 (NC_000001.11:147559128::T 91376/127448) Row 25715645 (NC_000001.11:147559128::TT 369/127524) Row 25715646 (NC_000001.11:147559128::TTT 7/127548)...	-	Apr 25, 2021 (155)
66	Korean Genome Project Submission ignored due to conflicting rows: Row 1931319 (NC_000001.11:147559128::T 1219/1832) Row 1931320 (NC_000001.11:147559128::TT 35/1832)	-	Apr 25, 2020 (154)
67	Korean Genome Project Submission ignored due to conflicting rows: Row 1931319 (NC_000001.11:147559128::T 1219/1832) Row 1931320 (NC_000001.11:147559128::TT 35/1832)	-	Apr 25, 2020 (154)
68	8.3KJPN Submission ignored due to conflicting rows: Row 4194659 (NC_000001.10:147030904:T: 4872/16758) Row 4194660 (NC_000001.10:147030904:TT: 18/16758) Row 4194661 (NC_000001.10:147030904::T 89/16758)	-	Apr 25, 2021 (155)
69	8.3KJPN Submission ignored due to conflicting rows: Row 4194659 (NC_000001.10:147030904:T: 4872/16758) Row 4194660 (NC_000001.10:147030904:TT: 18/16758) Row 4194661 (NC_000001.10:147030904::T 89/16758)	-	Apr 25, 2021 (155)
70	8.3KJPN Submission ignored due to conflicting rows: Row 4194659 (NC_000001.10:147030904:T: 4872/16758) Row 4194660 (NC_000001.10:147030904:TT: 18/16758) Row 4194661 (NC_000001.10:147030904::T 89/16758)	-	Apr 25, 2021 (155)
71	14KJPN Submission ignored due to conflicting rows: Row 7205450 (NC_000001.11:147559128::T 18881/27862) Row 7205452 (NC_000001.11:147559128::TT 133/27862) Row 7205453 (NC_000001.11:147559128:T: 31/27862)...	-	Oct 12, 2022 (156)
72	14KJPN Submission ignored due to conflicting rows: Row 7205450 (NC_000001.11:147559128::T 18881/27862) Row 7205452 (NC_000001.11:147559128::TT 133/27862) Row 7205453 (NC_000001.11:147559128:T: 31/27862)...	-	Oct 12, 2022 (156)
73	14KJPN Submission ignored due to conflicting rows: Row 7205450 (NC_000001.11:147559128::T 18881/27862) Row 7205452 (NC_000001.11:147559128::TT 133/27862) Row 7205453 (NC_000001.11:147559128:T: 31/27862)...	-	Oct 12, 2022 (156)
74	14KJPN Submission ignored due to conflicting rows: Row 7205450 (NC_000001.11:147559128::T 18881/27862) Row 7205452 (NC_000001.11:147559128::TT 133/27862) Row 7205453 (NC_000001.11:147559128:T: 31/27862)...	-	Oct 12, 2022 (156)
75	ALFA	NC_000001.11 - 147559129	Apr 25, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs201874158	May 11, 2012 (137)
rs371173361	May 13, 2013 (138)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4002735391	NC_000001.11:147559128:TTTTTT:	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTT	(self)
392129447	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTT	(self)
ss4002735390	NC_000001.11:147559128:TT:	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTT	(self)
ss5146225353	NC_000001.10:147030904:TT:	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3687703650, ss3799765374, ss4002735389, ss5244131519, ss5673368349	NC_000001.11:147559128:T:	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
392129447	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss81703546	NC_000001.8:144255719:CTT:CTT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss5146225353	NC_000001.10:147030904:TT:TT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3063607366, ss3064423185, ss3065326403, ss3645070553, ss3646782804, ss3842006431, ss3945553318, ss4002735385, ss5244131517, ss5444772288, ss5673368346, ss5801221808, ss5849095999, ss5910100806	NC_000001.11:147559128::T	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
392129447	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3687703651	NC_000001.11:147559129::T	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss5146225354	NC_000001.10:147030904::T	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3745572046	NC_000001.10:147030905::T	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3945553319, ss4002735386, ss5244131518, ss5673368348	NC_000001.11:147559128::TT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
392129447	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3687703652	NC_000001.11:147559129::TT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4002735387, ss5673368350	NC_000001.11:147559128::TTT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
392129447	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000001.11:147559128:TTTTTTTTTTT… NC_000001.11:147559128:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs11292399

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs11292399