Name: rs10579529
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs10579529

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr5:131772421-131772437 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(A)₇ / del(A)₆ / del(A)₅ / del(…
del(A)₇ / del(A)₆ / del(A)₅ / del(A)₄ / delAAA / delAA / delA / dupA / dupAA
Variation Type: Indel Insertion and Deletion
Frequency: (A)₁₇=0.3346 (1630/4872, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: FNIP1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	4872	AAAAAAAAAAAAAAAAA=0.3346	AAAAAAAAAA=0.0000, AAAAAAAAAAA=0.0000, AAAAAAAAAAAA=0.0000, AAAAAAAAAAAAA=0.0090, AAAAAAAAAAAAAA=0.6037, AAAAAAAAAAAAAAA=0.0390, AAAAAAAAAAAAAAAA=0.0133, AAAAAAAAAAAAAAAAAA=0.0004, AAAAAAAAAAAAAAAAAAA=0.0000	0.169995	0.451928	0.378077	36
European	Sub	4706	AAAAAAAAAAAAAAAAA=0.3119	AAAAAAAAAA=0.0000, AAAAAAAAAAA=0.0000, AAAAAAAAAAAA=0.0000, AAAAAAAAAAAAA=0.0093, AAAAAAAAAAAAAA=0.6241, AAAAAAAAAAAAAAA=0.0404, AAAAAAAAAAAAAAAA=0.0138, AAAAAAAAAAAAAAAAAA=0.0004, AAAAAAAAAAAAAAAAAAA=0.0000	0.138164	0.469565	0.392271	16
African	Sub	62	AAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
African Others	Sub	4	AAAAAAAAAAAAAAAAA=1.0	AAAAAAAAAA=0.0, AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
African American	Sub	58	AAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Asian	Sub	16	AAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	14	AAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	2	AAAAAAAAAAAAAAAAA=1.0	AAAAAAAAAA=0.0, AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
Latin American 1	Sub	0	AAAAAAAAAAAAAAAAA=0	AAAAAAAAAA=0, AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Latin American 2	Sub	50	AAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
South Asian	Sub	2	AAAAAAAAAAAAAAAAA=1.0	AAAAAAAAAA=0.0, AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
Other	Sub	36	AAAAAAAAAAAAAAAAA=0.89	AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.11, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00	0.833333	0.055556	0.111111	2

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	4872	(A)₁₇=0.3346	del(A)₇=0.0000, del(A)₆=0.0000, del(A)₅=0.0000, del(A)₄=0.0090, delAAA=0.6037, delAA=0.0390, delA=0.0133, dupA=0.0004, dupAA=0.0000
Allele Frequency Aggregator	European	Sub	4706	(A)₁₇=0.3119	del(A)₇=0.0000, del(A)₆=0.0000, del(A)₅=0.0000, del(A)₄=0.0093, delAAA=0.6241, delAA=0.0404, delA=0.0138, dupA=0.0004, dupAA=0.0000
Allele Frequency Aggregator	African	Sub	62	(A)₁₇=1.00	del(A)₇=0.00, del(A)₆=0.00, del(A)₅=0.00, del(A)₄=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00
Allele Frequency Aggregator	Latin American 2	Sub	50	(A)₁₇=1.00	del(A)₇=0.00, del(A)₆=0.00, del(A)₅=0.00, del(A)₄=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00
Allele Frequency Aggregator	Other	Sub	36	(A)₁₇=0.89	del(A)₇=0.00, del(A)₆=0.00, del(A)₅=0.00, del(A)₄=0.00, delAAA=0.11, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00
Allele Frequency Aggregator	Asian	Sub	16	(A)₁₇=1.00	del(A)₇=0.00, del(A)₆=0.00, del(A)₅=0.00, del(A)₄=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00
Allele Frequency Aggregator	South Asian	Sub	2	(A)₁₇=1.0	del(A)₇=0.0, del(A)₆=0.0, del(A)₅=0.0, del(A)₄=0.0, delAAA=0.0, delAA=0.0, delA=0.0, dupA=0.0, dupAA=0.0
Allele Frequency Aggregator	Latin American 1	Sub	0	(A)₁₇=0	del(A)₇=0, del(A)₆=0, del(A)₅=0, del(A)₄=0, delAAA=0, delAA=0, delA=0, dupA=0, dupAA=0

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 5	NC_000005.10:g.131772431_131772437del
GRCh38.p14 chr 5	NC_000005.10:g.131772432_131772437del
GRCh38.p14 chr 5	NC_000005.10:g.131772433_131772437del
GRCh38.p14 chr 5	NC_000005.10:g.131772434_131772437del
GRCh38.p14 chr 5	NC_000005.10:g.131772435_131772437del
GRCh38.p14 chr 5	NC_000005.10:g.131772436_131772437del
GRCh38.p14 chr 5	NC_000005.10:g.131772437del
GRCh38.p14 chr 5	NC_000005.10:g.131772437dup
GRCh38.p14 chr 5	NC_000005.10:g.131772436_131772437dup
GRCh37.p13 chr 5	NC_000005.9:g.131108124_131108130del
GRCh37.p13 chr 5	NC_000005.9:g.131108125_131108130del
GRCh37.p13 chr 5	NC_000005.9:g.131108126_131108130del
GRCh37.p13 chr 5	NC_000005.9:g.131108127_131108130del
GRCh37.p13 chr 5	NC_000005.9:g.131108128_131108130del
GRCh37.p13 chr 5	NC_000005.9:g.131108129_131108130del
GRCh37.p13 chr 5	NC_000005.9:g.131108130del
GRCh37.p13 chr 5	NC_000005.9:g.131108130dup
GRCh37.p13 chr 5	NC_000005.9:g.131108129_131108130dup

Gene: FNIP1, folliculin interacting protein 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
FNIP1 transcript variant 2	NM_001008738.3:c.92+24403… NM_001008738.3:c.92+24403_92+24409del	N/A	Intron Variant
FNIP1 transcript variant 3	NM_001346113.2:c.92+24403… NM_001346113.2:c.92+24403_92+24409del	N/A	Intron Variant
FNIP1 transcript variant 4	NM_001346114.2:c.92+24403… NM_001346114.2:c.92+24403_92+24409del	N/A	Intron Variant
FNIP1 transcript variant 1	NM_133372.3:c.92+24403_92… NM_133372.3:c.92+24403_92+24409del	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₇=	del(A)₇	del(A)₆	del(A)₅	del(A)₄	delAAA	delAA	delA	dupA	dupAA
GRCh38.p14 chr 5	NC_000005.10:g.131772421_131772437=	NC_000005.10:g.131772431_131772437del	NC_000005.10:g.131772432_131772437del	NC_000005.10:g.131772433_131772437del	NC_000005.10:g.131772434_131772437del	NC_000005.10:g.131772435_131772437del	NC_000005.10:g.131772436_131772437del	NC_000005.10:g.131772437del	NC_000005.10:g.131772437dup	NC_000005.10:g.131772436_131772437dup
GRCh37.p13 chr 5	NC_000005.9:g.131108114_131108130=	NC_000005.9:g.131108124_131108130del	NC_000005.9:g.131108125_131108130del	NC_000005.9:g.131108126_131108130del	NC_000005.9:g.131108127_131108130del	NC_000005.9:g.131108128_131108130del	NC_000005.9:g.131108129_131108130del	NC_000005.9:g.131108130del	NC_000005.9:g.131108130dup	NC_000005.9:g.131108129_131108130dup
FNIP1 transcript variant 2	NM_001008738.2:c.92+24409=	NM_001008738.2:c.92+24403_92+24409del	NM_001008738.2:c.92+24404_92+24409del	NM_001008738.2:c.92+24405_92+24409del	NM_001008738.2:c.92+24406_92+24409del	NM_001008738.2:c.92+24407_92+24409del	NM_001008738.2:c.92+24408_92+24409del	NM_001008738.2:c.92+24409del	NM_001008738.2:c.92+24409dup	NM_001008738.2:c.92+24408_92+24409dup
FNIP1 transcript variant 2	NM_001008738.3:c.92+24409=	NM_001008738.3:c.92+24403_92+24409del	NM_001008738.3:c.92+24404_92+24409del	NM_001008738.3:c.92+24405_92+24409del	NM_001008738.3:c.92+24406_92+24409del	NM_001008738.3:c.92+24407_92+24409del	NM_001008738.3:c.92+24408_92+24409del	NM_001008738.3:c.92+24409del	NM_001008738.3:c.92+24409dup	NM_001008738.3:c.92+24408_92+24409dup
FNIP1 transcript variant 3	NM_001346113.2:c.92+24409=	NM_001346113.2:c.92+24403_92+24409del	NM_001346113.2:c.92+24404_92+24409del	NM_001346113.2:c.92+24405_92+24409del	NM_001346113.2:c.92+24406_92+24409del	NM_001346113.2:c.92+24407_92+24409del	NM_001346113.2:c.92+24408_92+24409del	NM_001346113.2:c.92+24409del	NM_001346113.2:c.92+24409dup	NM_001346113.2:c.92+24408_92+24409dup
FNIP1 transcript variant 4	NM_001346114.2:c.92+24409=	NM_001346114.2:c.92+24403_92+24409del	NM_001346114.2:c.92+24404_92+24409del	NM_001346114.2:c.92+24405_92+24409del	NM_001346114.2:c.92+24406_92+24409del	NM_001346114.2:c.92+24407_92+24409del	NM_001346114.2:c.92+24408_92+24409del	NM_001346114.2:c.92+24409del	NM_001346114.2:c.92+24409dup	NM_001346114.2:c.92+24408_92+24409dup
FNIP1 transcript variant 1	NM_133372.2:c.92+24409=	NM_133372.2:c.92+24403_92+24409del	NM_133372.2:c.92+24404_92+24409del	NM_133372.2:c.92+24405_92+24409del	NM_133372.2:c.92+24406_92+24409del	NM_133372.2:c.92+24407_92+24409del	NM_133372.2:c.92+24408_92+24409del	NM_133372.2:c.92+24409del	NM_133372.2:c.92+24409dup	NM_133372.2:c.92+24408_92+24409dup
FNIP1 transcript variant 1	NM_133372.3:c.92+24409=	NM_133372.3:c.92+24403_92+24409del	NM_133372.3:c.92+24404_92+24409del	NM_133372.3:c.92+24405_92+24409del	NM_133372.3:c.92+24406_92+24409del	NM_133372.3:c.92+24407_92+24409del	NM_133372.3:c.92+24408_92+24409del	NM_133372.3:c.92+24409del	NM_133372.3:c.92+24409dup	NM_133372.3:c.92+24408_92+24409dup
FNIP1 transcript variant X1	XM_005272141.1:c.92+24409=	XM_005272141.1:c.92+24403_92+24409del	XM_005272141.1:c.92+24404_92+24409del	XM_005272141.1:c.92+24405_92+24409del	XM_005272141.1:c.92+24406_92+24409del	XM_005272141.1:c.92+24407_92+24409del	XM_005272141.1:c.92+24408_92+24409del	XM_005272141.1:c.92+24409del	XM_005272141.1:c.92+24409dup	XM_005272141.1:c.92+24408_92+24409dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

72 SubSNP, 33 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HUMANGENOME_JCVI	ss95407267	Feb 05, 2009 (130)
2	BCMHGSC_JDW	ss103717963	Dec 01, 2009 (131)
3	GMI	ss287781098	Mar 15, 2016 (147)
4	GMI	ss288659007	May 04, 2012 (137)
5	GMI	ss288659008	May 04, 2012 (137)
6	PJP	ss295245267	Aug 21, 2014 (142)
7	PJP	ss295245268	May 09, 2011 (134)
8	SSMP	ss663561083	Apr 01, 2015 (144)
9	BILGI_BIOE	ss666328531	Apr 25, 2013 (138)
10	SSIP	ss947153769	Aug 21, 2014 (142)
11	DDI	ss1536479986	Apr 01, 2015 (144)
12	EVA_UK10K_ALSPAC	ss1704872488	Apr 01, 2015 (144)
13	EVA_UK10K_TWINSUK	ss1704872600	Apr 01, 2015 (144)
14	EVA_UK10K_ALSPAC	ss1710231292	Apr 01, 2015 (144)
15	EVA_UK10K_TWINSUK	ss1710231299	Apr 01, 2015 (144)
16	HAMMER_LAB	ss1804084318	Sep 08, 2015 (146)
17	SYSTEMSBIOZJU	ss2626137886	Nov 08, 2017 (151)
18	SWEGEN	ss2997798342	Nov 08, 2017 (151)
19	MCHAISSO	ss3065051526	Nov 08, 2017 (151)
20	BIOINF_KMB_FNS_UNIBA	ss3645908035	Oct 12, 2018 (152)
21	URBANLAB	ss3648170919	Oct 12, 2018 (152)
22	EVA_DECODE	ss3715708488	Jul 13, 2019 (153)
23	EVA_DECODE	ss3715708489	Jul 13, 2019 (153)
24	EVA_DECODE	ss3715708490	Jul 13, 2019 (153)
25	EVA_DECODE	ss3715708491	Jul 13, 2019 (153)
26	ACPOP	ss3732821518	Jul 13, 2019 (153)
27	ACPOP	ss3732821519	Jul 13, 2019 (153)
28	ACPOP	ss3732821520	Jul 13, 2019 (153)
29	ACPOP	ss3732821521	Jul 13, 2019 (153)
30	ACPOP	ss3732821522	Jul 13, 2019 (153)
31	PACBIO	ss3785251610	Jul 13, 2019 (153)
32	PACBIO	ss3790635397	Jul 13, 2019 (153)
33	PACBIO	ss3795512338	Jul 13, 2019 (153)
34	EVA	ss3829507401	Apr 26, 2020 (154)
35	KOGIC	ss3957649537	Apr 26, 2020 (154)
36	KOGIC	ss3957649538	Apr 26, 2020 (154)
37	KOGIC	ss3957649539	Apr 26, 2020 (154)
38	KOGIC	ss3957649540	Apr 26, 2020 (154)
39	KOGIC	ss3957649541	Apr 26, 2020 (154)
40	KOGIC	ss3957649542	Apr 26, 2020 (154)
41	GNOMAD	ss4129382557	Apr 26, 2021 (155)
42	GNOMAD	ss4129382558	Apr 26, 2021 (155)
43	GNOMAD	ss4129382559	Apr 26, 2021 (155)
44	GNOMAD	ss4129382560	Apr 26, 2021 (155)
45	GNOMAD	ss4129382561	Apr 26, 2021 (155)
46	GNOMAD	ss4129382562	Apr 26, 2021 (155)
47	GNOMAD	ss4129382563	Apr 26, 2021 (155)
48	TOMMO_GENOMICS	ss5174152963	Apr 26, 2021 (155)
49	TOMMO_GENOMICS	ss5174152964	Apr 26, 2021 (155)
50	TOMMO_GENOMICS	ss5174152965	Apr 26, 2021 (155)
51	TOMMO_GENOMICS	ss5174152966	Apr 26, 2021 (155)
52	TOMMO_GENOMICS	ss5174152967	Apr 26, 2021 (155)
53	1000G_HIGH_COVERAGE	ss5265857792	Oct 17, 2022 (156)
54	1000G_HIGH_COVERAGE	ss5265857793	Oct 17, 2022 (156)
55	1000G_HIGH_COVERAGE	ss5265857794	Oct 17, 2022 (156)
56	1000G_HIGH_COVERAGE	ss5265857795	Oct 17, 2022 (156)
57	1000G_HIGH_COVERAGE	ss5265857796	Oct 17, 2022 (156)
58	1000G_HIGH_COVERAGE	ss5265857797	Oct 17, 2022 (156)
59	HUGCELL_USP	ss5463822617	Oct 17, 2022 (156)
60	HUGCELL_USP	ss5463822618	Oct 17, 2022 (156)
61	HUGCELL_USP	ss5463822619	Oct 17, 2022 (156)
62	HUGCELL_USP	ss5463822620	Oct 17, 2022 (156)
63	TOMMO_GENOMICS	ss5711231583	Oct 17, 2022 (156)
64	TOMMO_GENOMICS	ss5711231584	Oct 17, 2022 (156)
65	TOMMO_GENOMICS	ss5711231585	Oct 17, 2022 (156)
66	TOMMO_GENOMICS	ss5711231586	Oct 17, 2022 (156)
67	TOMMO_GENOMICS	ss5711231587	Oct 17, 2022 (156)
68	EVA	ss5835647306	Oct 17, 2022 (156)
69	EVA	ss5835647307	Oct 17, 2022 (156)
70	EVA	ss5835647308	Oct 17, 2022 (156)
71	EVA	ss5896335735	Oct 17, 2022 (156)
72	EVA	ss5980316548	Oct 17, 2022 (156)
73	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 16079191 (NC_000005.9:131108114:AA: 3334/3854) Row 16079192 (NC_000005.9:131108113:AAAA: 386/3854)	-	Oct 12, 2018 (152)
74	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 16079191 (NC_000005.9:131108114:AA: 3334/3854) Row 16079192 (NC_000005.9:131108113:AAAA: 386/3854)	-	Oct 12, 2018 (152)
75	gnomAD - Genomes Submission ignored due to conflicting rows: Row 204473667 (NC_000005.10:131772420::A 74/133416) Row 204473668 (NC_000005.10:131772420::AA 1/133418) Row 204473669 (NC_000005.10:131772420:A: 4160/133334)...	-	Apr 26, 2021 (155)
76	gnomAD - Genomes Submission ignored due to conflicting rows: Row 204473667 (NC_000005.10:131772420::A 74/133416) Row 204473668 (NC_000005.10:131772420::AA 1/133418) Row 204473669 (NC_000005.10:131772420:A: 4160/133334)...	-	Apr 26, 2021 (155)
77	gnomAD - Genomes Submission ignored due to conflicting rows: Row 204473667 (NC_000005.10:131772420::A 74/133416) Row 204473668 (NC_000005.10:131772420::AA 1/133418) Row 204473669 (NC_000005.10:131772420:A: 4160/133334)...	-	Apr 26, 2021 (155)
78	gnomAD - Genomes Submission ignored due to conflicting rows: Row 204473667 (NC_000005.10:131772420::A 74/133416) Row 204473668 (NC_000005.10:131772420::AA 1/133418) Row 204473669 (NC_000005.10:131772420:A: 4160/133334)...	-	Apr 26, 2021 (155)
79	gnomAD - Genomes Submission ignored due to conflicting rows: Row 204473667 (NC_000005.10:131772420::A 74/133416) Row 204473668 (NC_000005.10:131772420::AA 1/133418) Row 204473669 (NC_000005.10:131772420:A: 4160/133334)...	-	Apr 26, 2021 (155)
80	gnomAD - Genomes Submission ignored due to conflicting rows: Row 204473667 (NC_000005.10:131772420::A 74/133416) Row 204473668 (NC_000005.10:131772420::AA 1/133418) Row 204473669 (NC_000005.10:131772420:A: 4160/133334)...	-	Apr 26, 2021 (155)
81	gnomAD - Genomes Submission ignored due to conflicting rows: Row 204473667 (NC_000005.10:131772420::A 74/133416) Row 204473668 (NC_000005.10:131772420::AA 1/133418) Row 204473669 (NC_000005.10:131772420:A: 4160/133334)...	-	Apr 26, 2021 (155)
82	Korean Genome Project Submission ignored due to conflicting rows: Row 14027538 (NC_000005.10:131772421:AAAA: 189/1832) Row 14027539 (NC_000005.10:131772422:AAA: 737/1832) Row 14027540 (NC_000005.10:131772425::A 35/1832)...	-	Apr 26, 2020 (154)
83	Korean Genome Project Submission ignored due to conflicting rows: Row 14027538 (NC_000005.10:131772421:AAAA: 189/1832) Row 14027539 (NC_000005.10:131772422:AAA: 737/1832) Row 14027540 (NC_000005.10:131772425::A 35/1832)...	-	Apr 26, 2020 (154)
84	Korean Genome Project Submission ignored due to conflicting rows: Row 14027538 (NC_000005.10:131772421:AAAA: 189/1832) Row 14027539 (NC_000005.10:131772422:AAA: 737/1832) Row 14027540 (NC_000005.10:131772425::A 35/1832)...	-	Apr 26, 2020 (154)
85	Korean Genome Project Submission ignored due to conflicting rows: Row 14027538 (NC_000005.10:131772421:AAAA: 189/1832) Row 14027539 (NC_000005.10:131772422:AAA: 737/1832) Row 14027540 (NC_000005.10:131772425::A 35/1832)...	-	Apr 26, 2020 (154)
86	Korean Genome Project Submission ignored due to conflicting rows: Row 14027538 (NC_000005.10:131772421:AAAA: 189/1832) Row 14027539 (NC_000005.10:131772422:AAA: 737/1832) Row 14027540 (NC_000005.10:131772425::A 35/1832)...	-	Apr 26, 2020 (154)
87	Korean Genome Project Submission ignored due to conflicting rows: Row 14027538 (NC_000005.10:131772421:AAAA: 189/1832) Row 14027539 (NC_000005.10:131772422:AAA: 737/1832) Row 14027540 (NC_000005.10:131772425::A 35/1832)...	-	Apr 26, 2020 (154)
88	Northern Sweden Submission ignored due to conflicting rows: Row 6106383 (NC_000005.9:131108113:AAA: 389/596) Row 6106384 (NC_000005.9:131108113:A: 7/596) Row 6106385 (NC_000005.9:131108113:AA: 22/596)...	-	Jul 13, 2019 (153)
89	Northern Sweden Submission ignored due to conflicting rows: Row 6106383 (NC_000005.9:131108113:AAA: 389/596) Row 6106384 (NC_000005.9:131108113:A: 7/596) Row 6106385 (NC_000005.9:131108113:AA: 22/596)...	-	Jul 13, 2019 (153)
90	Northern Sweden Submission ignored due to conflicting rows: Row 6106383 (NC_000005.9:131108113:AAA: 389/596) Row 6106384 (NC_000005.9:131108113:A: 7/596) Row 6106385 (NC_000005.9:131108113:AA: 22/596)...	-	Jul 13, 2019 (153)
91	Northern Sweden Submission ignored due to conflicting rows: Row 6106383 (NC_000005.9:131108113:AAA: 389/596) Row 6106384 (NC_000005.9:131108113:A: 7/596) Row 6106385 (NC_000005.9:131108113:AA: 22/596)...	-	Jul 13, 2019 (153)
92	Northern Sweden Submission ignored due to conflicting rows: Row 6106383 (NC_000005.9:131108113:AAA: 389/596) Row 6106384 (NC_000005.9:131108113:A: 7/596) Row 6106385 (NC_000005.9:131108113:AA: 22/596)...	-	Jul 13, 2019 (153)
93	8.3KJPN Submission ignored due to conflicting rows: Row 32122270 (NC_000005.9:131108113:AAA: 6589/16756) Row 32122271 (NC_000005.9:131108113:AAAA: 1449/16756) Row 32122272 (NC_000005.9:131108113:A: 280/16756)...	-	Apr 26, 2021 (155)
94	8.3KJPN Submission ignored due to conflicting rows: Row 32122270 (NC_000005.9:131108113:AAA: 6589/16756) Row 32122271 (NC_000005.9:131108113:AAAA: 1449/16756) Row 32122272 (NC_000005.9:131108113:A: 280/16756)...	-	Apr 26, 2021 (155)
95	8.3KJPN Submission ignored due to conflicting rows: Row 32122270 (NC_000005.9:131108113:AAA: 6589/16756) Row 32122271 (NC_000005.9:131108113:AAAA: 1449/16756) Row 32122272 (NC_000005.9:131108113:A: 280/16756)...	-	Apr 26, 2021 (155)
96	8.3KJPN Submission ignored due to conflicting rows: Row 32122270 (NC_000005.9:131108113:AAA: 6589/16756) Row 32122271 (NC_000005.9:131108113:AAAA: 1449/16756) Row 32122272 (NC_000005.9:131108113:A: 280/16756)...	-	Apr 26, 2021 (155)
97	8.3KJPN Submission ignored due to conflicting rows: Row 32122270 (NC_000005.9:131108113:AAA: 6589/16756) Row 32122271 (NC_000005.9:131108113:AAAA: 1449/16756) Row 32122272 (NC_000005.9:131108113:A: 280/16756)...	-	Apr 26, 2021 (155)
98	14KJPN Submission ignored due to conflicting rows: Row 45068687 (NC_000005.10:131772420:AAA: 11200/28256) Row 45068688 (NC_000005.10:131772420:AAAA: 2419/28256) Row 45068689 (NC_000005.10:131772420:A: 425/28256)...	-	Oct 17, 2022 (156)
99	14KJPN Submission ignored due to conflicting rows: Row 45068687 (NC_000005.10:131772420:AAA: 11200/28256) Row 45068688 (NC_000005.10:131772420:AAAA: 2419/28256) Row 45068689 (NC_000005.10:131772420:A: 425/28256)...	-	Oct 17, 2022 (156)
100	14KJPN Submission ignored due to conflicting rows: Row 45068687 (NC_000005.10:131772420:AAA: 11200/28256) Row 45068688 (NC_000005.10:131772420:AAAA: 2419/28256) Row 45068689 (NC_000005.10:131772420:A: 425/28256)...	-	Oct 17, 2022 (156)
101	14KJPN Submission ignored due to conflicting rows: Row 45068687 (NC_000005.10:131772420:AAA: 11200/28256) Row 45068688 (NC_000005.10:131772420:AAAA: 2419/28256) Row 45068689 (NC_000005.10:131772420:A: 425/28256)...	-	Oct 17, 2022 (156)
102	14KJPN Submission ignored due to conflicting rows: Row 45068687 (NC_000005.10:131772420:AAA: 11200/28256) Row 45068688 (NC_000005.10:131772420:AAAA: 2419/28256) Row 45068689 (NC_000005.10:131772420:A: 425/28256)...	-	Oct 17, 2022 (156)
103	UK 10K study - Twins Submission ignored due to conflicting rows: Row 16079191 (NC_000005.9:131108114:AA: 3134/3708) Row 16079192 (NC_000005.9:131108113:AAAA: 433/3708)	-	Oct 12, 2018 (152)
104	UK 10K study - Twins Submission ignored due to conflicting rows: Row 16079191 (NC_000005.9:131108114:AA: 3134/3708) Row 16079192 (NC_000005.9:131108113:AAAA: 433/3708)	-	Oct 12, 2018 (152)
105	ALFA	NC_000005.10 - 131772421	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs142655475	Oct 11, 2011 (135)
rs199642387	May 11, 2012 (137)
rs34896705	May 23, 2006 (127)
rs68050933	Feb 27, 2009 (130)
rs68050934	Feb 27, 2009 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAA	(self)
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss5174152966	NC_000005.9:131108113:AAAAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss3957649542, ss4129382563, ss5265857797, ss5711231586	NC_000005.10:131772420:AAAAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss288659007	NC_000005.8:131136012:AAAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss1704872488, ss1704872600, ss2997798342, ss3732821522, ss3785251610, ss3829507401, ss5174152964, ss5835647307	NC_000005.9:131108113:AAAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss3715708491, ss4129382562, ss5265857795, ss5463822617, ss5711231584	NC_000005.10:131772420:AAAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss3957649537	NC_000005.10:131772421:AAAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss288659008, ss295245267	NC_000005.8:131136012:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss295245268	NC_000005.8:131136026:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss663561083, ss666328531, ss1536479986, ss1804084318, ss2626137886, ss3732821518, ss3790635397, ss3795512338, ss5174152963, ss5835647306, ss5980316548	NC_000005.9:131108113:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss947153769, ss1710231292, ss1710231299	NC_000005.9:131108114:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3065051526, ss3645908035, ss3648170919, ss4129382561, ss5265857792, ss5463822618, ss5711231583, ss5896335735	NC_000005.10:131772420:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3715708490	NC_000005.10:131772421:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3957649538	NC_000005.10:131772422:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss287781098	NT_034772.6:39421985:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss95407267, ss103717963	NT_034772.6:39421999:AAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3732821520, ss5174152967, ss5835647308	NC_000005.9:131108113:AA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
	NC_000005.9:131108114:AA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss4129382560, ss5265857794, ss5463822619, ss5711231587	NC_000005.10:131772420:AA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss3715708489	NC_000005.10:131772422:AA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss3957649540	NC_000005.10:131772423:AA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss3732821519, ss5174152965	NC_000005.9:131108113:A:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss4129382559, ss5265857793, ss5463822620, ss5711231585	NC_000005.10:131772420:A:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss3715708488	NC_000005.10:131772423:A:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss3957649541	NC_000005.10:131772424:A:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss3732821521	NC_000005.9:131108113::A	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss4129382557, ss5265857796	NC_000005.10:131772420::A	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss3957649539	NC_000005.10:131772425::A	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss4129382558	NC_000005.10:131772420::AA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA	(self)
2024375035	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA	(self)

Removed from this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Destination RSIDs
ss3478758533	NC_000005.10:131772420:AAAAAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAAA
ss3478758534	NC_000005.10:131772420:AAAAAAA:	NC_000005.10:131772420:AAAAAAAAAAA… NC_000005.10:131772420:AAAAAAAAAAAAAAAAA:AAAAAAAAAA

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs10579529

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs10579529