SNP Links for Nucleotide (Select 564473417) - SNP

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:22027424 (GRCh38)
1:22353917 (GRCh37)
Canonical SPDI:: NC_000001.11:22027423:A:C
Gene:: LINC00339 (Varview), LINC01635 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.22027424A>C, NC_000001.10:g.22353917A>C, NG_047042.3:g.6914A>C, NR_109762.1:n.151A>C, NR_109761.1:n.147A>C

Select item 146888055813.

rs1468880558 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:22030759 (GRCh38)
1:22357252 (GRCh37)
Canonical SPDI:: NC_000001.11:22030758:T:C
Gene:: LINC00339 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.22030759T>C, NC_000001.10:g.22357252T>C, NG_047042.3:g.10249T>C, NR_023918.2:n.662T>C, NR_023918.1:n.639T>C, NR_023919.2:n.620T>C, NR_023919.1:n.575T>C, NR_109762.1:n.741T>C, NR_109761.1:n.737T>C, NR_109760.1:n.617T>C, NR_109759.1:n.616T>C, NM_014179.1:c.105T>C

Select item 146827874414.

rs1468278744 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:22030930 (GRCh38)
1:22357423 (GRCh37)
Canonical SPDI:: NC_000001.11:22030929:A:G
Gene:: LINC00339 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000018/1 (GnomAD)
HGVS:: NC_000001.11:g.22030930A>G, NC_000001.10:g.22357423A>G, NG_047042.3:g.10420A>G, NR_023918.2:n.833A>G, NR_023918.1:n.810A>G, NR_023919.2:n.791A>G, NR_023919.1:n.746A>G, NR_109762.1:n.912A>G, NR_109761.1:n.908A>G, NR_109760.1:n.788A>G, NR_109759.1:n.787A>G, NM_014179.1:c.276A>G

Select item 146653797715.

rs1466537977 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 1:22031051 (GRCh38)
1:22357544 (GRCh37)
Canonical SPDI:: NC_000001.11:22031050:G:
Gene:: LINC00339 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00227/64 (TOMMO)
HGVS:: NC_000001.11:g.22031051del, NC_000001.10:g.22357544del, NG_047042.3:g.10541del, NR_023918.2:n.954del, NR_023918.1:n.931del, NR_023919.2:n.912del, NR_023919.1:n.867del, NR_109762.1:n.1033del, NR_109761.1:n.1029del, NR_109760.1:n.909del, NR_109759.1:n.908del, NM_014179.1:c.387del

Select item 146605723016.

rs1466057230 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:22030481 (GRCh38)
1:22356974 (GRCh37)
Canonical SPDI:: NC_000001.11:22030480:A:G
Gene:: LINC00339 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.22030481A>G, NC_000001.10:g.22356974A>G, NG_047042.3:g.9971A>G, NR_023918.2:n.384A>G, NR_023918.1:n.361A>G, NR_023919.2:n.342A>G, NR_023919.1:n.297A>G, NR_109762.1:n.463A>G, NR_109761.1:n.459A>G, NR_109760.1:n.339A>G, NR_109759.1:n.338A>G, NM_014179.1:c.-175A>G

Select item 146563999617.

rs1465639996 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:22031020 (GRCh38)
1:22357513 (GRCh37)
Canonical SPDI:: NC_000001.11:22031019:G:A
Gene:: LINC00339 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000009/1 (GnomAD)
HGVS:: NC_000001.11:g.22031020G>A, NC_000001.10:g.22357513G>A, NG_047042.3:g.10510G>A, NR_023918.2:n.923G>A, NR_023918.1:n.900G>A, NR_023919.2:n.881G>A, NR_023919.1:n.836G>A, NR_109762.1:n.1002G>A, NR_109761.1:n.998G>A, NR_109760.1:n.878G>A, NR_109759.1:n.877G>A, NM_014179.1:c.362G>A

Select item 146360666218.

rs1463606662 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:22031028 (GRCh38)
1:22357521 (GRCh37)
Canonical SPDI:: NC_000001.11:22031027:T:C
Gene:: LINC00339 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.22031028T>C, NC_000001.10:g.22357521T>C, NG_047042.3:g.10518T>C, NR_023918.2:n.931T>C, NR_023918.1:n.908T>C, NR_023919.2:n.889T>C, NR_023919.1:n.844T>C, NR_109762.1:n.1010T>C, NR_109761.1:n.1006T>C, NR_109760.1:n.886T>C, NR_109759.1:n.885T>C, NM_014179.1:c.370T>C

Select item 146020390719.

rs1460203907 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:22031171 (GRCh38)
1:22357664 (GRCh37)
Canonical SPDI:: NC_000001.11:22031170:C:T
Gene:: LINC00339 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.22031171C>T, NC_000001.10:g.22357664C>T, NG_047042.3:g.10661C>T, NR_023918.2:n.1074C>T, NR_023918.1:n.1051C>T, NR_023919.2:n.1032C>T, NR_023919.1:n.987C>T, NR_109762.1:n.1153C>T, NR_109761.1:n.1149C>T, NR_109760.1:n.1029C>T, NR_109759.1:n.1028C>T, NM_014179.1:c.*42C>T

Select item 145965700520.

rs1459657005 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:22030984 (GRCh38)
1:22357477 (GRCh37)
Canonical SPDI:: NC_000001.11:22030983:T:C
Gene:: LINC00339 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.22030984T>C, NC_000001.10:g.22357477T>C, NG_047042.3:g.10474T>C, NR_023918.2:n.887T>C, NR_023918.1:n.864T>C, NR_023919.2:n.845T>C, NR_023919.1:n.800T>C, NR_109762.1:n.966T>C, NR_109761.1:n.962T>C, NR_109760.1:n.842T>C, NR_109759.1:n.841T>C, NM_014179.1:c.326T>C

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