SNP Links for Gene (Select 440359) - SNP

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Select item 14904505931.

rs1490450593 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:31567446 (GRCh38)
16:31578767 (GRCh37)
Canonical SPDI:: NC_000016.10:31567445:T:C
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.31567446T>C, NC_000016.9:g.31578767T>C, NR_135055.1:n.270A>G

Select item 14900903552.

rs1490090355 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTC>- [Show Flanks]
Chromosome:: 16:31569791 (GRCh38)
16:31581112 (GRCh37)
Canonical SPDI:: NC_000016.10:31569786:TTTCTTTTC:TTTC
Gene:: YBX3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTC=0./0 (ALFA)
HGVS:: NC_000016.10:g.31569791_31569795del, NC_000016.9:g.31581112_31581116del

Select item 14895273703.

rs1489527370 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:31570302 (GRCh38)
16:31581623 (GRCh37)
Canonical SPDI:: NC_000016.10:31570301:G:A
Gene:: YBX3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.31570302G>A, NC_000016.9:g.31581623G>A

Select item 14890967144.

rs1489096714 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:31570304 (GRCh38)
16:31581625 (GRCh37)
Canonical SPDI:: NC_000016.10:31570303:A:G
Gene:: YBX3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.31570304A>G, NC_000016.9:g.31581625A>G

Select item 14890665065.

rs1489066506 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:31568613 (GRCh38)
16:31579934 (GRCh37)
Canonical SPDI:: NC_000016.10:31568612:G:A
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000016.10:g.31568613G>A, NC_000016.9:g.31579934G>A, NR_027011.1:n.912C>T

Select item 14888571306.

rs1488857130 has merged into rs1257033077 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGC>-,GGCGGC [Show Flanks]
Chromosome:: 16:31569629 (GRCh38)
16:31580950 (GRCh37)
Canonical SPDI:: NC_000016.10:31569619:GGCGGCGGCGGC:GGCGGCGGC,NC_000016.10:31569619:GGCGGCGGCGGC:GGCGGCGGCGGCGGC
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGCGGCGGCGGCGGC=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.31569620GGC[3], NC_000016.10:g.31569620GGC[5], NC_000016.9:g.31580941GGC[3], NC_000016.9:g.31580941GGC[5]

Select item 14883352587.

rs1488335258 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:31569812 (GRCh38)
16:31581133 (GRCh37)
Canonical SPDI:: NC_000016.10:31569811:C:A,NC_000016.10:31569811:C:T
Gene:: YBX3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000429/7 (ALFA)
A=0.000065/8 (GnomAD)
HGVS:: NC_000016.10:g.31569812C>A, NC_000016.10:g.31569812C>T, NC_000016.9:g.31581133C>A, NC_000016.9:g.31581133C>T

Select item 14874833138.

rs1487483313 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:31569410 (GRCh38)
16:31580731 (GRCh37)
Canonical SPDI:: NC_000016.10:31569409:C:T
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000029/4 (GnomAD)
T=0.00003/8 (TOPMED)
HGVS:: NC_000016.10:g.31569410C>T, NC_000016.9:g.31580731C>T, NR_027011.1:n.115G>A

Select item 14872226229.

rs1487222622 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTC>- [Show Flanks]
Chromosome:: 16:31569782 (GRCh38)
16:31581103 (GRCh37)
Canonical SPDI:: NC_000016.10:31569780:CTTTC:C
Gene:: YBX3P1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000016.10:g.31569782_31569785del, NC_000016.9:g.31581103_31581106del

Select item 148638010310.

rs1486380103 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 16:31568883 (GRCh38)
16:31580204 (GRCh37)
Canonical SPDI:: NC_000016.10:31568882:A:T
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.31568883A>T, NC_000016.9:g.31580204A>T, NR_027011.1:n.642T>A

Select item 148627238511.

rs1486272385 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:31571314 (GRCh38)
16:31582635 (GRCh37)
Canonical SPDI:: NC_000016.10:31571313:A:G
Gene:: YBX3P1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.31571314A>G, NC_000016.9:g.31582635A>G

Select item 148578509412.

rs1485785094 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:31570221 (GRCh38)
16:31581542 (GRCh37)
Canonical SPDI:: NC_000016.10:31570220:C:G
Gene:: YBX3P1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.31570221C>G, NC_000016.9:g.31581542C>G

Select item 148573518213.

rs1485735182 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:31569571 (GRCh38)
16:31580892 (GRCh37)
Canonical SPDI:: NC_000016.10:31569570:C:G,NC_000016.10:31569570:C:T
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.31569571C>G, NC_000016.10:g.31569571C>T, NC_000016.9:g.31580892C>G, NC_000016.9:g.31580892C>T

Select item 148484193914.

rs1484841939 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:31569616 (GRCh38)
16:31580937 (GRCh37)
Canonical SPDI:: NC_000016.10:31569615:C:A
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
A=0.000348/1 (KOREAN)
A=0.00112/2 (Korea1K)
HGVS:: NC_000016.10:g.31569616C>A, NC_000016.9:g.31580937C>A

Select item 148353163915.

rs1483531639 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:31570346 (GRCh38)
16:31581667 (GRCh37)
Canonical SPDI:: NC_000016.10:31570345:G:A
Gene:: YBX3P1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000054/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000016.10:g.31570346G>A, NC_000016.9:g.31581667G>A

Select item 148257490316.

rs1482574903 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:31570122 (GRCh38)
16:31581443 (GRCh37)
Canonical SPDI:: NC_000016.10:31570121:G:A
Gene:: YBX3P1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000034/9 (TOPMED)
A=0.000035/1 (TOMMO)
A=0.000684/2 (KOREAN)
HGVS:: NC_000016.10:g.31570122G>A, NC_000016.9:g.31581443G>A

Select item 148228376417.

rs1482283764 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:31568119 (GRCh38)
16:31579440 (GRCh37)
Canonical SPDI:: NC_000016.10:31568118:G:A
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.31568119G>A, NC_000016.9:g.31579440G>A, NR_027011.1:n.1406C>T

Select item 148204522018.

rs1482045220 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:31567676 (GRCh38)
16:31578997 (GRCh37)
Canonical SPDI:: NC_000016.10:31567675:G:T
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.31567676G>T, NC_000016.9:g.31578997G>T, NR_135055.1:n.40C>A

Select item 148167586019.

rs1481675860 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,AAA [Show Flanks]
Chromosome:: 16:31568090 (GRCh38)
16:31579411 (GRCh37)
Canonical SPDI:: NC_000016.10:31568084:AAAAAAA:AAAAA,NC_000016.10:31568084:AAAAAAA:AAAAAAAA
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.31568090_31568091del, NC_000016.10:g.31568091dup, NC_000016.9:g.31579411_31579412del, NC_000016.9:g.31579412dup, NR_027011.1:n.1439_1440del, NR_027011.1:n.1440dup

Select item 148139003520.

rs1481390035 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:31569288 (GRCh38)
16:31580609 (GRCh37)
Canonical SPDI:: NC_000016.10:31569287:G:A
Gene:: YBX3P1 (Varview), FRG2KP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.31569288G>A, NC_000016.9:g.31580609G>A, NR_027011.1:n.237C>T

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