SNP Links for Gene (Select 283080) - SNP

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Select item 14913880771.

rs1491388077 has merged into rs1403994670 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 10:28856538 (GRCh38)
10:29145467 (GRCh37)
Canonical SPDI:: NC_000010.11:28856536:ATA:A
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00202/24 (ALFA)
HGVS:: NC_000010.11:g.28856538_28856539del, NC_000010.10:g.29145467_29145468del

Select item 14913821522.

rs1491382152 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTTTCTTTCTTTCTT,CTTTCTTTCTTTCTTTCTT,CTTTCTTTCTTTCTTTCTTTCTT,CTTTCTTTCTTTCTTTCTTTCTTTCTT [Show Flanks]
Chromosome:: 10:28858407 (GRCh38)
10:29147337 (GRCh37)
Canonical SPDI:: NC_000010.11:28858407:TT:TTCTTTCTTTCTTTCTT,NC_000010.11:28858407:TT:TTCTTTCTTTCTTTCTTTCTT,NC_000010.11:28858407:TT:TTCTTTCTTTCTTTCTTTCTTTCTT,NC_000010.11:28858407:TT:TTCTTTCTTTCTTTCTTTCTTTCTTTCTT
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTCTTTCTTTCTTTCTTTCTT=0./0 (ALFA)
TTCTTTCTTTCTTTCTTTCTTTC=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.28858408_28858409TTCT[4]T[1], NC_000010.11:g.28858408_28858409TTCT[5]T[1], NC_000010.11:g.28858408_28858409TTCT[6]T[1], NC_000010.11:g.28858408_28858409TTCT[7]T[1], NC_000010.10:g.29147337_29147338TTCT[4]T[1], NC_000010.10:g.29147337_29147338TTCT[5]T[1], NC_000010.10:g.29147337_29147338TTCT[6]T[1], NC_000010.10:g.29147337_29147338TTCT[7]T[1]

Select item 14913169203.

rs1491316920 has merged into rs10718562 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 10:28877250 (GRCh38)
10:29166179 (GRCh37)
Canonical SPDI:: NC_000010.11:28877239:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:28877239:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:28877239:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000010.11:28877239:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:28877239:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000010.11:28877239:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000010.11:28877239:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
-=0.1295/499 (ALSPAC)
-=0.134/497 (TWINSUK)
-=0.4097/2052 (1000Genomes)
HGVS:: NC_000010.11:g.28877250_28877252del, NC_000010.11:g.28877251_28877252del, NC_000010.11:g.28877252del, NC_000010.11:g.28877252dup, NC_000010.11:g.28877251_28877252dup, NC_000010.11:g.28877250_28877252dup, NC_000010.11:g.28877241_28877252dup, NC_000010.10:g.29166179_29166181del, NC_000010.10:g.29166180_29166181del, NC_000010.10:g.29166181del, NC_000010.10:g.29166181dup, NC_000010.10:g.29166180_29166181dup, NC_000010.10:g.29166179_29166181dup, NC_000010.10:g.29166170_29166181dup

Select item 14911353004.

rs1491135300 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 10:28877240 (GRCh38)
10:29166170 (GRCh37)
Canonical SPDI:: NC_000010.11:28877240::G
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.28877240_28877241insG, NC_000010.10:g.29166169_29166170insG

Select item 14911305865.

rs1491130586 has merged into rs35587006 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 10:28877678 (GRCh38)
10:29166607 (GRCh37)
Canonical SPDI:: NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:28877668:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
AA=0.3612/1809 (1000Genomes)
HGVS:: NC_000010.11:g.28877678_28877689del, NC_000010.11:g.28877679_28877689del, NC_000010.11:g.28877680_28877689del, NC_000010.11:g.28877681_28877689del, NC_000010.11:g.28877682_28877689del, NC_000010.11:g.28877683_28877689del, NC_000010.11:g.28877685_28877689del, NC_000010.11:g.28877686_28877689del, NC_000010.11:g.28877687_28877689del, NC_000010.11:g.28877688_28877689del, NC_000010.11:g.28877689del, NC_000010.11:g.28877689dup, NC_000010.11:g.28877688_28877689dup, NC_000010.11:g.28877687_28877689dup, NC_000010.11:g.28877686_28877689dup, NC_000010.11:g.28877685_28877689dup, NC_000010.11:g.28877684_28877689dup, NC_000010.10:g.29166607_29166618del, NC_000010.10:g.29166608_29166618del, NC_000010.10:g.29166609_29166618del, NC_000010.10:g.29166610_29166618del, NC_000010.10:g.29166611_29166618del, NC_000010.10:g.29166612_29166618del, NC_000010.10:g.29166614_29166618del, NC_000010.10:g.29166615_29166618del, NC_000010.10:g.29166616_29166618del, NC_000010.10:g.29166617_29166618del, NC_000010.10:g.29166618del, NC_000010.10:g.29166618dup, NC_000010.10:g.29166617_29166618dup, NC_000010.10:g.29166616_29166618dup, NC_000010.10:g.29166615_29166618dup, NC_000010.10:g.29166614_29166618dup, NC_000010.10:g.29166613_29166618dup

Select item 14910704376.

rs1491070437 has merged into rs112530422 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>-,GGGG [Show Flanks]
Chromosome:: 10:28863645 (GRCh38)
10:29152574 (GRCh37)
Canonical SPDI:: NC_000010.11:28863643:GGG:G,NC_000010.11:28863643:GGG:GGGGG
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGG=0./0 (ALFA)
-=0.00055/1 (Korea1K)
HGVS:: NC_000010.11:g.28863645_28863646del, NC_000010.11:g.28863645_28863646dup, NC_000010.10:g.29152574_29152575del, NC_000010.10:g.29152574_29152575dup

Select item 14909889617.

rs1490988961 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:28858817 (GRCh38)
10:29147746 (GRCh37)
Canonical SPDI:: NC_000010.11:28858816:T:C
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.28858817T>C, NC_000010.10:g.29147746T>C

Select item 14909580488.

rs1490958048 [Homo sapiens]

Variant type:: INS
Alleles:: ->TTTT [Show Flanks]
Chromosome:: 10:28882306 (GRCh38)
10:29171236 (GRCh37)
Canonical SPDI:: NC_000010.11:28882306::TTTT
Gene:: C10orf126 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency
MAF:: TTTT=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.28882306_28882307insTTTT, NC_000010.10:g.29171235_29171236insTTTT

Select item 14908416129.

rs1490841612 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:28859758 (GRCh38)
10:29148687 (GRCh37)
Canonical SPDI:: NC_000010.11:28859757:C:G
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.28859758C>G, NC_000010.10:g.29148687C>G

Select item 149078828910.

rs1490788289 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:28874101 (GRCh38)
10:29163030 (GRCh37)
Canonical SPDI:: NC_000010.11:28874100:A:C
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.28874101A>C, NC_000010.10:g.29163030A>C

Select item 149069227011.

rs1490692270 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:28867640 (GRCh38)
10:29156569 (GRCh37)
Canonical SPDI:: NC_000010.11:28867639:C:T
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000025/3 (GnomAD)
HGVS:: NC_000010.11:g.28867640C>T, NC_000010.10:g.29156569C>T

Select item 149062744912.

rs1490627449 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:28865955 (GRCh38)
10:29154884 (GRCh37)
Canonical SPDI:: NC_000010.11:28865954:T:G
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.28865955T>G, NC_000010.10:g.29154884T>G

Select item 149051965013.

rs1490519650 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTCT [Show Flanks]
Chromosome:: 10:28849044 (GRCh38)
10:29137974 (GRCh37)
Canonical SPDI:: NC_000010.11:28849044:TCTCT:TCTCTCTCT
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCTCTCT=0.000224/1 (ALFA)
TCTC=0.000007/1 (GnomAD)
TCTC=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.28849046CT[4], NC_000010.10:g.29137975CT[4]

Select item 149050069514.

rs1490500695 has merged into rs1482685696 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 10:28859314 (GRCh38)
10:29148243 (GRCh37)
Canonical SPDI:: NC_000010.11:28859313:GGGGGGGG:GGGGGGG,NC_000010.11:28859313:GGGGGGGG:GGGGGGGGG
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGG=0./0 (ALFA)
HGVS:: NC_000010.11:g.28859321del, NC_000010.11:g.28859321dup, NC_000010.10:g.29148250del, NC_000010.10:g.29148250dup

Select item 149048340815.

rs1490483408 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:28851571 (GRCh38)
10:29140500 (GRCh37)
Canonical SPDI:: NC_000010.11:28851570:A:G
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000045/12 (TOPMED)
HGVS:: NC_000010.11:g.28851571A>G, NC_000010.10:g.29140500A>G

Select item 149043439216.

rs1490434392 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TGTCG [Show Flanks]
Chromosome:: 10:28853445 (GRCh38)
10:29142375 (GRCh37)
Canonical SPDI:: NC_000010.11:28853445:CGTGTCG:CGTGTCGTGTCG
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CGTGTCGTGTCG=0.000142/2 (ALFA)
CGTGT=0.00003/8 (TOPMED)
CGTGT=0.000036/5 (GnomAD)
HGVS:: NC_000010.11:g.28853448_28853452dup, NC_000010.10:g.29142377_29142381dup

Select item 149035157317.

rs1490351573 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:28860183 (GRCh38)
10:29149112 (GRCh37)
Canonical SPDI:: NC_000010.11:28860182:T:A
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.28860183T>A, NC_000010.10:g.29149112T>A

Select item 149034502518.

rs1490345025 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGA>- [Show Flanks]
Chromosome:: 10:28879547 (GRCh38)
10:29168476 (GRCh37)
Canonical SPDI:: NC_000010.11:28879544:GAAGA:GA
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GA=0.000071/1 (ALFA)
-=0.000036/5 (GnomAD)
-=0.000038/10 (TOPMED)
HGVS:: NC_000010.11:g.28879547_28879549del, NC_000010.10:g.29168476_29168478del

Select item 149032888819.

rs1490328888 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:28880550 (GRCh38)
10:29169479 (GRCh37)
Canonical SPDI:: NC_000010.11:28880549:T:G
Gene:: C10orf126 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.28880550T>G, NC_000010.10:g.29169479T>G, NR_164114.1:n.801T>G, NM_001278522.1:c.*104T>G, NM_173577.1:c.*638T>G

Select item 149017534020.

rs1490175340 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:28858421 (GRCh38)
10:29147350 (GRCh37)
Canonical SPDI:: NC_000010.11:28858420:T:C
Gene:: C10orf126 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/2 (GnomAD)
HGVS:: NC_000010.11:g.28858421T>C, NC_000010.10:g.29147350T>C

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