SNP Links for Gene (Select 26339) - SNP

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Select item 14909629461.

rs1490962946 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:98467717 (GRCh38)
3:98186561 (GRCh37)
Canonical SPDI:: NC_000003.12:98467716:A:T
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98467717A>T, NC_000003.11:g.98186561A>T, NG_042151.1:g.3238A>T

Select item 14907787802.

rs1490778780 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:98469322 (GRCh38)
3:98188166 (GRCh37)
Canonical SPDI:: NC_000003.12:98469321:T:C
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.98469322T>C, NC_000003.11:g.98188166T>C, NG_042151.1:g.4843T>C

Select item 14904742513.

rs1490474251 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:98468108 (GRCh38)
3:98186952 (GRCh37)
Canonical SPDI:: NC_000003.12:98468107:C:A
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000003.12:g.98468108C>A, NC_000003.11:g.98186952C>A, NG_042151.1:g.3629C>A

Select item 14896649514.

rs1489664951 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:98470374 (GRCh38)
3:98189218 (GRCh37)
Canonical SPDI:: NC_000003.12:98470373:A:G
Gene:: OR5K1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98470374A>G, NC_000003.11:g.98189218A>G, NG_042151.1:g.5895A>G, NM_001004736.3:c.798A>G, NM_001004736.4:c.798A>G, NM_001004736.2:c.798A>G

Select item 14890886815.

rs1489088681 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98469951 (GRCh38)
3:98188795 (GRCh37)
Canonical SPDI:: NC_000003.12:98469950:C:T
Gene:: OR5K1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.98469951C>T, NC_000003.11:g.98188795C>T, NG_042151.1:g.5472C>T, NM_001004736.3:c.375C>T, NM_001004736.4:c.375C>T, NM_001004736.2:c.375C>T

Select item 14884551556.

rs1488455155 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:98467767 (GRCh38)
3:98186611 (GRCh37)
Canonical SPDI:: NC_000003.12:98467766:C:A,NC_000003.12:98467766:C:T
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.98467767C>A, NC_000003.12:g.98467767C>T, NC_000003.11:g.98186611C>A, NC_000003.11:g.98186611C>T, NG_042151.1:g.3288C>A, NG_042151.1:g.3288C>T

Select item 14881676837.

rs1488167683 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98468483 (GRCh38)
3:98187327 (GRCh37)
Canonical SPDI:: NC_000003.12:98468482:C:T
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98468483C>T, NC_000003.11:g.98187327C>T, NG_042151.1:g.4004C>T

Select item 14858955368.

rs1485895536 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:98467836 (GRCh38)
3:98186680 (GRCh37)
Canonical SPDI:: NC_000003.12:98467835:T:C
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000003.12:g.98467836T>C, NC_000003.11:g.98186680T>C, NG_042151.1:g.3357T>C

Select item 14841612249.

rs1484161224 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98470240 (GRCh38)
3:98189084 (GRCh37)
Canonical SPDI:: NC_000003.12:98470239:C:T
Gene:: OR5K1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.98470240C>T, NC_000003.11:g.98189084C>T, NG_042151.1:g.5761C>T, NM_001004736.3:c.664C>T, NM_001004736.4:c.664C>T, NM_001004736.2:c.664C>T, NP_001004736.2:p.Leu222Phe

Select item 148378062610.

rs1483780626 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:98470128 (GRCh38)
3:98188972 (GRCh37)
Canonical SPDI:: NC_000003.12:98470127:G:T
Gene:: OR5K1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98470128G>T, NC_000003.11:g.98188972G>T, NG_042151.1:g.5649G>T, NM_001004736.3:c.552G>T, NM_001004736.4:c.552G>T, NM_001004736.2:c.552G>T, NP_001004736.2:p.Leu184Phe

Select item 148363577511.

rs1483635775 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:98469300 (GRCh38)
3:98188144 (GRCh37)
Canonical SPDI:: NC_000003.12:98469299:G:A
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98469300G>A, NC_000003.11:g.98188144G>A, NG_042151.1:g.4821G>A

Select item 148282038712.

rs1482820387 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:98467902 (GRCh38)
3:98186746 (GRCh37)
Canonical SPDI:: NC_000003.12:98467901:T:C
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000066/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000003.12:g.98467902T>C, NC_000003.11:g.98186746T>C, NG_042151.1:g.3423T>C

Select item 148209703613.

rs1482097036 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:98470537 (GRCh38)
3:98189381 (GRCh37)
Canonical SPDI:: NC_000003.12:98470536:A:G
Gene:: OR5K1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.98470537A>G, NC_000003.11:g.98189381A>G, NG_042151.1:g.6058A>G, NM_001004736.3:c.*34A>G, NM_001004736.4:c.*34A>G

Select item 148208474214.

rs1482084742 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TGA [Show Flanks]
Chromosome:: 3:98470573 (GRCh38)
3:98189418 (GRCh37)
Canonical SPDI:: NC_000003.12:98470573:TGA:TGATGA
Gene:: OR5K1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGATGA=0./0 (ALFA)
TGA=0.000004/1 (TOPMED)
TGA=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98470574_98470576dup, NC_000003.11:g.98189418_98189420dup, NG_042151.1:g.6095_6097dup, NM_001004736.3:c.*71_*73dup, NM_001004736.4:c.*71_*73dup

Select item 148161266115.

rs1481612661 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:98467773 (GRCh38)
3:98186617 (GRCh37)
Canonical SPDI:: NC_000003.12:98467772:T:C
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000003.12:g.98467773T>C, NC_000003.11:g.98186617T>C, NG_042151.1:g.3294T>C

Select item 148130397116.

rs1481303971 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:98469169 (GRCh38)
3:98188013 (GRCh37)
Canonical SPDI:: NC_000003.12:98469168:A:C
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000671/3 (ALFA)
C=0.000007/1 (GnomAD)
C=0.00067/3 (Estonian)
HGVS:: NC_000003.12:g.98469169A>C, NC_000003.11:g.98188013A>C, NG_042151.1:g.4690A>C

Select item 148063803117.

rs1480638031 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98469957 (GRCh38)
3:98188801 (GRCh37)
Canonical SPDI:: NC_000003.12:98469956:C:T
Gene:: OR5K1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.98469957C>T, NC_000003.11:g.98188801C>T, NG_042151.1:g.5478C>T, NM_001004736.3:c.381C>T, NM_001004736.4:c.381C>T, NM_001004736.2:c.381C>T

Select item 148002822018.

rs1480028220 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98469007 (GRCh38)
3:98187851 (GRCh37)
Canonical SPDI:: NC_000003.12:98469006:C:T
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98469007C>T, NC_000003.11:g.98187851C>T, NG_042151.1:g.4528C>T

Select item 147997689819.

rs1479976898 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 3:98468093 (GRCh38)
3:98186937 (GRCh37)
Canonical SPDI:: NC_000003.12:98468092:T:A,NC_000003.12:98468092:T:C
Gene:: OR5K1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (GnomAD)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98468093T>A, NC_000003.12:g.98468093T>C, NC_000003.11:g.98186937T>A, NC_000003.11:g.98186937T>C, NG_042151.1:g.3614T>A, NG_042151.1:g.3614T>C

Select item 147934005620.

rs1479340056 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:98471061 (GRCh38)
3:98189905 (GRCh37)
Canonical SPDI:: NC_000003.12:98471060:G:A
Gene:: OR5K1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000003.12:g.98471061G>A, NC_000003.11:g.98189905G>A, NG_042151.1:g.6582G>A, NM_001004736.4:c.*558G>A

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