SNP Links for Gene (Select 149837) - SNP

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Select item 14913434901.

rs1491343490 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TTTTTTTTTTTTTTCCTCTCTTTTTCTCCTCTTCTTTTTTTTTTTTTT
Chromosome:: no mapping
Canonical SPDI:

Select item 14912104982.

rs1491210498 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 20:5503159 (GRCh38)
20:5483805 (GRCh37)
Canonical SPDI:: NC_000020.11:5503158:CA:
Gene:: LINC00654 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00211/25 (ALFA)
HGVS:: NC_000020.11:g.5503159_5503160del, NC_000020.10:g.5483805_5483806del

Select item 14904214083.

rs1490421408 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 20:5503164 (GRCh38)
20:5483810 (GRCh37)
Canonical SPDI:: NC_000020.11:5503163:A:C
Gene:: LINC00654 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.5503164A>C, NC_000020.10:g.5483810A>C

Select item 14903552604.

rs1490355260 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:5502400 (GRCh38)
20:5483046 (GRCh37)
Canonical SPDI:: NC_000020.11:5502399:C:G
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.5502400C>G, NC_000020.10:g.5483046C>G

Select item 14901469655.

rs1490146965 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:5496865 (GRCh38)
20:5477511 (GRCh37)
Canonical SPDI:: NC_000020.11:5496864:C:T
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.5496865C>T, NC_000020.10:g.5477511C>T, NR_015406.2:n.5298G>A

Select item 14900216666.

rs1490021666 [Homo sapiens]

Variant type:: DELINS
Alleles:: TACTC>- [Show Flanks]
Chromosome:: 20:5497205 (GRCh38)
20:5477851 (GRCh37)
Canonical SPDI:: NC_000020.11:5497202:TCTACTC:TC
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TC=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.5497205_5497209del, NC_000020.10:g.5477851_5477855del, NR_015406.2:n.4956_4960del

Select item 14899701597.

rs1489970159 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:5496319 (GRCh38)
20:5476965 (GRCh37)
Canonical SPDI:: NC_000020.11:5496318:A:G
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.5496319A>G, NC_000020.10:g.5476965A>G, NR_015406.2:n.5844T>C

Select item 14899417478.

rs1489941747 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:5503331 (GRCh38)
20:5483977 (GRCh37)
Canonical SPDI:: NC_000020.11:5503330:C:T
Gene:: LINC00654 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000072/19 (TOPMED)
T=0.000079/11 (GnomAD)
T=0.000312/2 (1000Genomes)
HGVS:: NC_000020.11:g.5503331C>T, NC_000020.10:g.5483977C>T

Select item 14895139299.

rs1489513929 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 20:5504299 (GRCh38)
20:5484945 (GRCh37)
Canonical SPDI:: NC_000020.11:5504298:C:A,NC_000020.11:5504298:C:T
Gene:: LINC00654 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.5504299C>A, NC_000020.11:g.5504299C>T, NC_000020.10:g.5484945C>A, NC_000020.10:g.5484945C>T, NR_015406.2:n.298G>T, NR_015406.2:n.298G>A, NR_015406.1:n.298G>T, NR_015406.1:n.298G>A

Select item 148917965410.

rs1489179654 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 20:5498221 (GRCh38)
20:5478867 (GRCh37)
Canonical SPDI:: NC_000020.11:5498220:G:T
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.5498221G>T, NC_000020.10:g.5478867G>T, NR_015406.2:n.3942C>A

Select item 148915010311.

rs1489150103 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:5500834 (GRCh38)
20:5481480 (GRCh37)
Canonical SPDI:: NC_000020.11:5500833:C:T
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.04721/771 (ALFA)
T=0.02505/420 (TOMMO)
T=0.03057/56 (Korea1K)
T=0.05514/161 (KOREAN)
C=0.5/37 (SGDP_PRJ)
HGVS:: NC_000020.11:g.5500834C>T, NC_000020.10:g.5481480C>T, NR_015406.2:n.1329G>A, NR_015406.1:n.1329G>A

Select item 148910107912.

rs1489101079 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCT>- [Show Flanks]
Chromosome:: 20:5504366 (GRCh38)
20:5485012 (GRCh37)
Canonical SPDI:: NC_000020.11:5504363:CTTCT:CT
Gene:: LINC00654 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.5504366_5504368del, NC_000020.10:g.5485012_5485014del, NR_015406.2:n.231_233del, NR_015406.1:n.231_233del

Select item 148894667513.

rs1488946675 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:5505996 (GRCh38)
20:5486642 (GRCh37)
Canonical SPDI:: NC_000020.11:5505995:G:A
Gene:: LINC00654 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.5505996G>A, NC_000020.10:g.5486642G>A

Select item 148874080414.

rs1488740804 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:5503974 (GRCh38)
20:5484620 (GRCh37)
Canonical SPDI:: NC_000020.11:5503973:T:C
Gene:: LINC00654 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.5503974T>C, NC_000020.10:g.5484620T>C

Select item 148851402715.

rs1488514027 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:5496827 (GRCh38)
20:5477473 (GRCh37)
Canonical SPDI:: NC_000020.11:5496826:C:G
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.5496827C>G, NC_000020.10:g.5477473C>G, NR_015406.2:n.5336G>C

Select item 148846785016.

rs1488467850 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:5501959 (GRCh38)
20:5482605 (GRCh37)
Canonical SPDI:: NC_000020.11:5501958:G:A
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.5501959G>A, NC_000020.10:g.5482605G>A

Select item 148829836317.

rs1488298363 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 20:5504208 (GRCh38)
20:5484854 (GRCh37)
Canonical SPDI:: NC_000020.11:5504207:T:G
Gene:: LINC00654 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.001916/32 (ALFA)
G=0.000937/6 (1000Genomes)
G=0.001065/149 (GnomAD)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000020.11:g.5504208T>G, NC_000020.10:g.5484854T>G

Select item 148828994018.

rs1488289940 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCT>- [Show Flanks]
Chromosome:: 20:5498051 (GRCh38)
20:5478697 (GRCh37)
Canonical SPDI:: NC_000020.11:5498048:CTCCT:CT
Gene:: LINC00654 (Varview), LOC124904863 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.5498051_5498053del, NC_000020.10:g.5478697_5478699del, NR_015406.2:n.4112_4114del

Select item 148826614019.

rs1488266140 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 20:5503326 (GRCh38)
20:5483972 (GRCh37)
Canonical SPDI:: NC_000020.11:5503325:G:T
Gene:: LINC00654 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.5503326G>T, NC_000020.10:g.5483972G>T

Select item 148824399420.

rs1488243994 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:5503244 (GRCh38)
20:5483890 (GRCh37)
Canonical SPDI:: NC_000020.11:5503243:T:C
Gene:: LINC00654 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000066/1 (ALFA)
C=0.000022/3 (GnomAD)
HGVS:: NC_000020.11:g.5503244T>C, NC_000020.10:g.5483890T>C

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