SNP Links for Gene (Select 143903) - SNP

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Select item 14915733051.

rs1491573305 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->GT
Chromosome:: no mapping
Canonical SPDI:

Select item 14911920502.

rs1491192050 has merged into rs1193183443 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATAT>-,AT,ATATAT,ATATATAT [Show Flanks]
Chromosome:: 11:111552030 (GRCh38)
11:111422755 (GRCh37)
Canonical SPDI:: NC_000011.10:111552014:TATATATATATATATATAT:TATATATATATATAT,NC_000011.10:111552014:TATATATATATATATATAT:TATATATATATATATAT,NC_000011.10:111552014:TATATATATATATATATAT:TATATATATATATATATATAT,NC_000011.10:111552014:TATATATATATATATATAT:TATATATATATATATATATATAT
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATATATATATAT=0./0 (ALFA)
TATA=0.000045/12 (TOPMED)
-=0.001667/1 (NorthernSweden)
-=0.005096/85 (TOMMO)
HGVS:: NC_000011.10:g.111552016AT[7], NC_000011.10:g.111552016AT[8], NC_000011.10:g.111552016AT[10], NC_000011.10:g.111552016AT[11], NC_000011.9:g.111422741AT[7], NC_000011.9:g.111422741AT[8], NC_000011.9:g.111422741AT[10], NC_000011.9:g.111422741AT[11]

Select item 14911503363.

rs1491150336 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA [Show Flanks]
Chromosome:: 11:111553715 (GRCh38)
11:111424440 (GRCh37)
Canonical SPDI:: NC_000011.10:111553712:TATA:TA,NC_000011.10:111553712:TATA:TATATA
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATA=0./0 (ALFA)
HGVS:: NC_000011.10:g.111553713TA[1], NC_000011.10:g.111553713TA[3], NC_000011.9:g.111424438TA[1], NC_000011.9:g.111424438TA[3]

Select item 14911190904.

rs1491119090 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA,CACA,CACACA,CACACACA,GACA [Show Flanks]
Chromosome:: 11:111553713 (GRCh38)
11:111424439 (GRCh37)
Canonical SPDI:: NC_000011.10:111553713:A:ACA,NC_000011.10:111553713:A:ACACA,NC_000011.10:111553713:A:ACACACA,NC_000011.10:111553713:A:ACACACACA,NC_000011.10:111553713:A:AGACA
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACA=0./0 (ALFA)
AGAC=0.00004/1 (TOMMO)
ACACACAC=0.00016/1 (1000Genomes)
HGVS:: NC_000011.10:g.111553714_111553715insCA, NC_000011.10:g.111553714_111553715insCACA, NC_000011.10:g.111553715CA[3], NC_000011.10:g.111553715CA[4], NC_000011.10:g.111553714_111553715insGACA, NC_000011.9:g.111424439_111424440insCA, NC_000011.9:g.111424439_111424440insCACA, NC_000011.9:g.111424440CA[3], NC_000011.9:g.111424440CA[4], NC_000011.9:g.111424439_111424440insGACA

Select item 14910108675.

rs1491010867 has merged into rs146406195 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 11:111553634 (GRCh38)
11:111424359 (GRCh37)
Canonical SPDI:: NC_000011.10:111553620:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:111553620:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:111553620:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:111553620:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:111553620:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:111553620:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
A=0.25/2 (KOREAN)
HGVS:: NC_000011.10:g.111553634_111553635del, NC_000011.10:g.111553635del, NC_000011.10:g.111553635dup, NC_000011.10:g.111553634_111553635dup, NC_000011.10:g.111553633_111553635dup, NC_000011.10:g.111553632_111553635dup, NC_000011.9:g.111424359_111424360del, NC_000011.9:g.111424360del, NC_000011.9:g.111424360dup, NC_000011.9:g.111424359_111424360dup, NC_000011.9:g.111424358_111424360dup, NC_000011.9:g.111424357_111424360dup

Select item 14909199666.

rs1490919966 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:111546522 (GRCh38)
11:111417247 (GRCh37)
Canonical SPDI:: NC_000011.10:111546521:C:T
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.111546522C>T, NC_000011.9:g.111417247C>T

Select item 14907160337.

rs1490716033 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:111538650 (GRCh38)
11:111409375 (GRCh37)
Canonical SPDI:: NC_000011.10:111538649:C:T
Gene:: LAYN (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.111538650C>T, NC_000011.9:g.111409375C>T

Select item 14906671018.

rs1490667101 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:111546192 (GRCh38)
11:111416917 (GRCh37)
Canonical SPDI:: NC_000011.10:111546191:A:G
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.111546192A>G, NC_000011.9:g.111416917A>G

Select item 14906362289.

rs1490636228 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:111555374 (GRCh38)
11:111426099 (GRCh37)
Canonical SPDI:: NC_000011.10:111555373:T:G
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.111555374T>G, NC_000011.9:g.111426099T>G

Select item 149042724610.

rs1490427246 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 11:111547056 (GRCh38)
11:111417781 (GRCh37)
Canonical SPDI:: NC_000011.10:111547055:A:C,NC_000011.10:111547055:A:G
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.111547056A>C, NC_000011.10:g.111547056A>G, NC_000011.9:g.111417781A>C, NC_000011.9:g.111417781A>G

Select item 149039227911.

rs1490392279 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:111549592 (GRCh38)
11:111420317 (GRCh37)
Canonical SPDI:: NC_000011.10:111549591:C:T
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.111549592C>T, NC_000011.9:g.111420317C>T

Select item 149019029812.

rs1490190298 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:111551067 (GRCh38)
11:111421792 (GRCh37)
Canonical SPDI:: NC_000011.10:111551066:G:A
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.111551067G>A, NC_000011.9:g.111421792G>A

Select item 149010286513.

rs1490102865 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:111546009 (GRCh38)
11:111416734 (GRCh37)
Canonical SPDI:: NC_000011.10:111546008:T:G
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.111546009T>G, NC_000011.9:g.111416734T>G

Select item 149009527614.

rs1490095276 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:111540944 (GRCh38)
11:111411669 (GRCh37)
Canonical SPDI:: NC_000011.10:111540943:G:A,NC_000011.10:111540943:G:C
Gene:: LAYN (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.111540944G>A, NC_000011.10:g.111540944G>C, NC_000011.9:g.111411669G>A, NC_000011.9:g.111411669G>C

Select item 148986222715.

rs1489862227 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:111539398 (GRCh38)
11:111410123 (GRCh37)
Canonical SPDI:: NC_000011.10:111539397:T:C
Gene:: LAYN (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.111539398T>C, NC_000011.9:g.111410123T>C

Select item 148984527116.

rs1489845271 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:111554938 (GRCh38)
11:111425663 (GRCh37)
Canonical SPDI:: NC_000011.10:111554937:T:A
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.111554938T>A, NC_000011.9:g.111425663T>A

Select item 148982895717.

rs1489828957 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:111563750 (GRCh38)
11:111434475 (GRCh37)
Canonical SPDI:: NC_000011.10:111563749:T:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.111563750T>A, NC_000011.9:g.111434475T>A

Select item 148979543818.

rs1489795438 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:111556146 (GRCh38)
11:111426871 (GRCh37)
Canonical SPDI:: NC_000011.10:111556145:G:C
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.111556146G>C, NC_000011.9:g.111426871G>C

Select item 148979240419.

rs1489792404 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:111544420 (GRCh38)
11:111415145 (GRCh37)
Canonical SPDI:: NC_000011.10:111544419:A:G
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.111544420A>G, NC_000011.9:g.111415145A>G

Select item 148932981120.

rs1489329811 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:111546427 (GRCh38)
11:111417152 (GRCh37)
Canonical SPDI:: NC_000011.10:111546426:T:C
Gene:: LAYN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.111546427T>C, NC_000011.9:g.111417152T>C

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