SNP Links for Gene (Select 117579) - SNP

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Select item 14902977001.

rs1490297700 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:14031724 (GRCh38)
19:14142536 (GRCh37)
Canonical SPDI:: NC_000019.10:14031723:A:G
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.14031724A>G, NC_000019.9:g.14142536A>G, NW_021160022.1:g.243565A>G

Select item 14897471482.

rs1489747148 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 19:14026198 (GRCh38)
19:14137010 (GRCh37)
Canonical SPDI:: NC_000019.10:14026197:C:A,NC_000019.10:14026197:C:G,NC_000019.10:14026197:C:T
Gene:: RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000019.10:g.14026198C>A, NC_000019.10:g.14026198C>G, NC_000019.10:g.14026198C>T, NC_000019.9:g.14137010C>A, NC_000019.9:g.14137010C>G, NC_000019.9:g.14137010C>T, NW_021160022.1:g.238039C>A, NW_021160022.1:g.238039C>G, NW_021160022.1:g.238039C>T

Select item 14895018173.

rs1489501817 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 19:14029812 (GRCh38)
19:14140624 (GRCh37)
Canonical SPDI:: NC_000019.10:14029811:T:A,NC_000019.10:14029811:T:C
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.14029812T>A, NC_000019.10:g.14029812T>C, NC_000019.9:g.14140624T>A, NC_000019.9:g.14140624T>C, NW_021160022.1:g.241653T>A, NW_021160022.1:g.241653T>C

Select item 14887655214.

rs1488765521 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14027272 (GRCh38)
19:14138084 (GRCh37)
Canonical SPDI:: NC_000019.10:14027271:C:T
Gene:: RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.14027272C>T, NC_000019.9:g.14138084C>T, NW_021160022.1:g.239113C>T

Select item 14869059795.

rs1486905979 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:14031784 (GRCh38)
19:14142596 (GRCh37)
Canonical SPDI:: NC_000019.10:14031783:C:A
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: 5_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000019.10:g.14031784C>A, NC_000019.9:g.14142596C>A, NW_021160022.1:g.243625C>A, NM_004843.4:c.-89C>A, NM_004843.3:c.-89C>A

Select item 14866319056.

rs1486631905 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:14027622 (GRCh38)
19:14138434 (GRCh37)
Canonical SPDI:: NC_000019.10:14027621:G:A
Gene:: RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14027622G>A, NC_000019.9:g.14138434G>A, NW_021160022.1:g.239463G>A

Select item 14861858827.

rs1486185882 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGAGGCCCCCACCCCC [Show Flanks]
Chromosome:: 19:14031630 (GRCh38)
19:14142443 (GRCh37)
Canonical SPDI:: NC_000019.10:14031630:CGGAGGCCCCCACCCCC:CGGAGGCCCCCACCCCCGGAGGCCCCCACCCCC
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: CGGAGGCCCCCACCCCCGGAGGCCCCCACCCCC=0./0 (ALFA)
CGGAGGCCCCCACCCC=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14031632_14031647dup, NC_000019.9:g.14142444_14142459dup, NW_021160022.1:g.243473_243488dup

Select item 14860783948.

rs1486078394 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:14026617 (GRCh38)
19:14137429 (GRCh37)
Canonical SPDI:: NC_000019.10:14026616:G:C
Gene:: RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14026617G>C, NC_000019.9:g.14137429G>C, NW_021160022.1:g.238458G>C

Select item 14860706779.

rs1486070677 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:14030512 (GRCh38)
19:14141324 (GRCh37)
Canonical SPDI:: NC_000019.10:14030511:G:C
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14030512G>C, NC_000019.9:g.14141324G>C, NW_021160022.1:g.242353G>C

Select item 148503367710.

rs1485033677 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:14027506 (GRCh38)
19:14138318 (GRCh37)
Canonical SPDI:: NC_000019.10:14027505:A:C
Gene:: RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14027506A>C, NC_000019.9:g.14138318A>C, NW_021160022.1:g.239347A>C

Select item 148500062911.

rs1485000629 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:14032004 (GRCh38)
19:14142816 (GRCh37)
Canonical SPDI:: NC_000019.10:14032003:G:A
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
HGVS:: NC_000019.10:g.14032004G>A, NC_000019.9:g.14142816G>A, NW_021160022.1:g.243845G>A

Select item 148499893312.

rs1484998933 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:14028041 (GRCh38)
19:14138853 (GRCh37)
Canonical SPDI:: NC_000019.10:14028040:G:A
Gene:: RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14028041G>A, NC_000019.9:g.14138853G>A, NW_021160022.1:g.239882G>A

Select item 148497044413.

rs1484970444 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:14030333 (GRCh38)
19:14141145 (GRCh37)
Canonical SPDI:: NC_000019.10:14030332:T:A
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,coding_sequence_variant,stop_gained,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.14030333T>A, NC_000019.9:g.14141145T>A, NW_021160022.1:g.242174T>A, NM_001311197.2:c.279T>A, NM_001311197.1:c.279T>A, NP_001298126.1:p.Cys93Ter

Select item 148436404914.

rs1484364049 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:14027140 (GRCh38)
19:14137952 (GRCh37)
Canonical SPDI:: NC_000019.10:14027139:G:C
Gene:: RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000019.10:g.14027140G>C, NC_000019.9:g.14137952G>C, NW_021160022.1:g.238981G>C

Select item 148403112215.

rs1484031122 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:14029561 (GRCh38)
19:14140373 (GRCh37)
Canonical SPDI:: NC_000019.10:14029560:G:C
Gene:: RLN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.14029561G>C, NC_000019.9:g.14140373G>C, NW_021160022.1:g.241402G>C

Select item 148340237116.

rs1483402371 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:14030300 (GRCh38)
19:14141112 (GRCh37)
Canonical SPDI:: NC_000019.10:14030299:G:T
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,coding_sequence_variant,synonymous_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.14030300G>T, NC_000019.9:g.14141112G>T, NW_021160022.1:g.242141G>T, NM_001311197.2:c.246G>T, NM_001311197.1:c.246G>T

Select item 148248753717.

rs1482487537 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:14028896 (GRCh38)
19:14139708 (GRCh37)
Canonical SPDI:: NC_000019.10:14028895:T:C
Gene:: RLN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14028896T>C, NC_000019.9:g.14139708T>C, NW_021160022.1:g.240737T>C

Select item 148248251518.

rs1482482515 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:14026256 (GRCh38)
19:14137068 (GRCh37)
Canonical SPDI:: NC_000019.10:14026255:G:A
Gene:: RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.14026256G>A, NC_000019.9:g.14137068G>A, NW_021160022.1:g.238097G>A

Select item 148105267619.

rs1481052676 has merged into rs58482695 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTATTATTATTATT>-,ATT,ATTATT,ATTATTATT,ATTATTATTATT,ATTATTATTATTATTATT,ATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATTATTATTATTATTATT [Show Flanks]
Chromosome:: 19:14029828 (GRCh38)
19:14140640 (GRCh37)
Canonical SPDI:: NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000019.10:14029806:ATTATTATTATTATTATTATTATTATTATTATTATT:ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATTATTATTATTATTATTATTATT=0./0 (ALFA)
HGVS:: NC_000019.10:g.14029807ATT[7], NC_000019.10:g.14029807ATT[8], NC_000019.10:g.14029807ATT[9], NC_000019.10:g.14029807ATT[10], NC_000019.10:g.14029807ATT[11], NC_000019.10:g.14029807ATT[13], NC_000019.10:g.14029807ATT[14], NC_000019.10:g.14029807ATT[15], NC_000019.10:g.14029807ATT[16], NC_000019.10:g.14029807ATT[17], NC_000019.10:g.14029807ATT[18], NC_000019.10:g.14029807ATT[19], NC_000019.10:g.14029807ATT[20], NC_000019.9:g.14140619ATT[7], NC_000019.9:g.14140619ATT[8], NC_000019.9:g.14140619ATT[9], NC_000019.9:g.14140619ATT[10], NC_000019.9:g.14140619ATT[11], NC_000019.9:g.14140619ATT[13], NC_000019.9:g.14140619ATT[14], NC_000019.9:g.14140619ATT[15], NC_000019.9:g.14140619ATT[16], NC_000019.9:g.14140619ATT[17], NC_000019.9:g.14140619ATT[18], NC_000019.9:g.14140619ATT[19], NC_000019.9:g.14140619ATT[20], NW_021160022.1:g.241648ATT[7], NW_021160022.1:g.241648ATT[8], NW_021160022.1:g.241648ATT[9], NW_021160022.1:g.241648ATT[10], NW_021160022.1:g.241648ATT[11], NW_021160022.1:g.241648ATT[13], NW_021160022.1:g.241648ATT[14], NW_021160022.1:g.241648ATT[15], NW_021160022.1:g.241648ATT[16], NW_021160022.1:g.241648ATT[17], NW_021160022.1:g.241648ATT[18], NW_021160022.1:g.241648ATT[19], NW_021160022.1:g.241648ATT[20]

Select item 147936805920.

rs1479368059 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:14030656 (GRCh38)
19:14141468 (GRCh37)
Canonical SPDI:: NC_000019.10:14030655:T:G
Gene:: IL27RA (Varview), RLN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.14030656T>G, NC_000019.9:g.14141468T>G, NW_021160022.1:g.242497T>G

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