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Klebsiella pneumoniae subsp. pneumoniae strain WRC28_CMC387MPC, whole genome shotgun sequencing project

GenBank: JAHUYP000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JAHUYP010000000          121 rc    DNA     linear   BCT 14-JUL-2021
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC28_CMC387MPC,
            whole genome shotgun sequencing project.
ACCESSION   JAHUYP000000000
VERSION     JAHUYP000000000.1
DBLINK      BioProject: PRJNA744686
            BioSample: SAMN20114561
KEYWORDS    WGS.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella; Klebsiella pneumoniae complex.
REFERENCE   1  (bases 1 to 121)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Carbapenem resistant Klebsiella pneumoniae_WRC28_CMC387MPC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 121)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     The Klebsiella pneumoniae subsp. pneumoniae whole genome shotgun
            (WGS) project has the project accession JAHUYP000000000.  This
            version of the project (01) has the accession number
            JAHUYP010000000, and consists of sequences
            JAHUYP010000001-JAHUYP010000121.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Christian medical college.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: UNICYCLER v. V.0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 188.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/09/2021 14:53:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,732
            CDSs (total)                      :: 5,645
            Genes (coding)                    :: 5,539
            CDSs (with protein)               :: 5,539
            Genes (RNA)                       :: 87
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 77
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 54 of 106
            Pseudo Genes (incomplete)         :: 43 of 106
            Pseudo Genes (internal stop)      :: 25 of 106
            Pseudo Genes (multiple problems)  :: 15 of 106
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..121
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC28_CMC387MPC"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2018"
                     /collected_by="Christian Medical College"
WGS         JAHUYP010000001-JAHUYP010000121
//
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