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    MICPUCDRAFT_56027 uncharacterized protein [ Micromonas pusilla CCMP1545 ]

    Gene ID: 9682152, updated on 1-Feb-2024

    Summary

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    Gene symbol
    MICPUCDRAFT_56027
    Gene description
    uncharacterized protein
    Locus tag
    MICPUCDRAFT_56027
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Micromonas pusilla CCMP1545 (strain: CCMP1545)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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    Genomic context

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    See MICPUCDRAFT_56027 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_003315884.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003315884.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle cargo loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    XP_003057168.1
    • Contains several pfam domains including a zinc finger, Sec23_trunk, Sec23_BS, Sec23_hel, and gelsolin

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003315884.1 Reference assembly

      Range
      343798..346358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003057122.1 → XP_003057168.1  uncharacterized protein MICPUCDRAFT_56027 [Micromonas pusilla CCMP1545]

      See identical proteins and their annotated locations for XP_003057168.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7R9T6G4, C1MNT8
      Conserved Domains (6) summary
      PLN00162
      Location:1 → 779
      PLN00162; transport protein sec23; Provisional
      pfam04810
      Location:53 → 90
      zf-Sec23_Sec24; Sec23/Sec24 zinc finger
      pfam04815
      Location:524 → 616
      Sec23_helical; Sec23/Sec24 helical domain
      pfam08033
      Location:404 → 506
      Sec23_BS; Sec23/Sec24 beta-sandwich domain
      cl00057
      Location:119 → 390
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cl15697
      Location:611 → 729
      ADF_gelsolin; Actin depolymerization factor/cofilin- and gelsolin-like domains
    Nucleotide Protein
    Heading Accession and Version

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