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    LOC9654663 auxin response factor 17 [ Selaginella moellendorffii ]

    Gene ID: 9654663, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9654663
    Gene description
    auxin response factor 17
    Locus tag
    SELMODRAFT_166729
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
    Also known as
    ETT1-1
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    Genomic context

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    See LOC9654663 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314265.1 (1852401..1856602)

    NW_003314265.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g24000, mitochondrial Neighboring gene uncharacterized LOC112344361 Neighboring gene uncharacterized LOC9654662 Neighboring gene uncharacterized LOC112344473 Neighboring gene SAC3 family protein B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314265 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314265.1 Reference v1.0

      Range
      1852401..1856602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002964060.1 → XP_002964106.1  auxin response factor 17 isoform X1

      See identical proteins and their annotated locations for XP_002964106.1

      UniProtKB/TrEMBL
      D8QZP3, D8T8Y2
      Conserved Domains (3) summary
      pfam02309
      Location:662 → 735
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:178 → 280
      B3; B3 DNA binding domain
      pfam06507
      Location:305 → 389
      Auxin_resp; Auxin response factor

    2. XM_024669336.1 → XP_024525104.1  auxin response factor 17 isoform X2

      UniProtKB/TrEMBL
      D8T8Y2
      Conserved Domains (3) summary
      pfam02309
      Location:660 → 733
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:178 → 280
      B3; B3 DNA binding domain
      pfam06507
      Location:305 → 387
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version

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