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    LOC9326435 SKP1-like protein 4 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9326435, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9326435
    Gene description
    SKP1-like protein 4
    Locus tag
    ARALYDRAFT_889462
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9326435 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (8605531..8606492)

    NW_003302555.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g20120 Neighboring gene GDSL esterase/lipase At5g63170 Neighboring gene subtilisin-like protease SBT5.1 Neighboring gene CO(2)-response secreted protease Neighboring gene transfer RNA glutamic acid (anticodon UUC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cullin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SKP1-like protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302555.1 Reference v.1.0 Primary Assembly

      Range
      8605531..8606492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002890327.2 → XP_002890373.1  SKP1-like protein 4

      See identical proteins and their annotated locations for XP_002890373.1

      UniProtKB/TrEMBL
      D7KI99
      Conserved Domains (3) summary
      smart00512
      Location:3 → 111
      Skp1; Found in Skp1 protein family
      COG5201
      Location:5 → 159
      SKP1; SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
      pfam01466
      Location:85 → 159
      Skp1; Skp1 family, dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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