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    LOC9323899 gibberellin 3-beta-dioxygenase 2 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9323899, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9323899
    Gene description
    gibberellin 3-beta-dioxygenase 2
    Locus tag
    ARALYDRAFT_677611
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9323899 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (19086014..19087830)

    NW_003302554.1Genomic Context describing neighboring genes Neighboring gene aspartate aminotransferase Neighboring gene katanin p60 ATPase-containing subunit A1 Neighboring gene gibberellin 3-beta-dioxygenase 4 Neighboring gene probable 2-oxoglutarate-dependent dioxygenase AOP1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables gibberellin 3-beta-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gibberellin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gibberellin 3-beta-dioxygenase 2
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302554.1 Reference v.1.0 Primary Assembly

      Range
      19086014..19087830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002887789.2 → XP_002887835.1  gibberellin 3-beta-dioxygenase 2

      See identical proteins and their annotated locations for XP_002887835.1

      UniProtKB/TrEMBL
      D7KX68
      Conserved Domains (3) summary
      PLN02254
      Location:1 → 347
      PLN02254; gibberellin 3-beta-dioxygenase
      pfam03171
      Location:208 → 301
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
      pfam14226
      Location:50 → 151
      DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
    Nucleotide Protein
    Heading Accession and Version

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