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    LOC9321959 somatic embryogenesis receptor kinase 4 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9321959, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9321959
    Gene description
    somatic embryogenesis receptor kinase 4
    Locus tag
    ARALYDRAFT_899604
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9321959 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (18462222..18467352)

    NW_003302553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9321958 Neighboring gene uncharacterized LOC110230324 Neighboring gene somatic embryogenesis receptor kinase 5 Neighboring gene aminotransferase ALD1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    somatic embryogenesis receptor kinase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302553.1 Reference v.1.0 Primary Assembly

      Range
      18462222..18467352
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002883763.2 → XP_002883809.1  somatic embryogenesis receptor kinase 4

      See identical proteins and their annotated locations for XP_002883809.1

      UniProtKB/TrEMBL
      D7L056
      Conserved Domains (4) summary
      smart00221
      Location:295 → 568
      STYKc; Protein kinase; unclassified specificity
      sd00033
      Location:101 → 124
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:29 → 72
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:300 → 571
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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