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    LOC9320282 mannan endo-1,4-beta-mannosidase 2 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9320282, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC9320282
    Gene description
    mannan endo-1,4-beta-mannosidase 2
    Locus tag
    ARALYDRAFT_480902
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9320282 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (24002196..24004885)

    NW_003302553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110229759 Neighboring gene uncharacterized LOC9320281 Neighboring gene riboflavin synthase Neighboring gene GPI-anchored protein LLG2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mannan endo-1,4-beta-mannosidase 2
    Names
    glycosyl hydrolase family 5 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302553.1 Reference v.1.0 Primary Assembly

      Range
      24002196..24004885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021033914.1 → XP_020889573.1  mannan endo-1,4-beta-mannosidase 2

      UniProtKB/TrEMBL
      D7L4J0
      Conserved Domains (1) summary
      COG3934
      Location:81 → 432
      COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials