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    LOC9309529 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9309529, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9309529
    Gene description
    very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2
    Locus tag
    ARALYDRAFT_909004
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9309529 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (4177240..4179546, complement)

    NW_003302550.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9307492 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene kinesin-like protein KIN-14A Neighboring gene mechanosensitive ion channel protein 2, chloroplastic Neighboring gene protein NETWORKED 2C

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxyacyl-CoA dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very long-chain fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302550.1 Reference v.1.0 Primary Assembly

      Range
      4177240..4179546 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002873415.2 → XP_002873461.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2

      See identical proteins and their annotated locations for XP_002873461.1

      UniProtKB/TrEMBL
      D7M2X6
      Conserved Domains (1) summary
      PLN02838
      Location:1 → 221
      PLN02838; 3-hydroxyacyl-CoA dehydratase subunit of elongase
    Nucleotide Protein
    Heading Accession and Version

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