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    rpl5 60S ribosomal protein L5 [ Dictyostelium discoideum AX4 ]

    Gene ID: 8621634, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rpl5
    Official Full Name
    60S ribosomal protein L5
    Primary source
    dictyBase:DDB_G0278539
    Locus tag
    DDB_G0278539
    See related
    AmoebaDB:DDB_G0278539; VEuPathDB:DDB_G0278539
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Dictyostelium discoideum AX4 (strain: AX4)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
    Old locus tag
    DDBDRAFT_0205521; DDBDRAFT_0231242; DDB_0205521; DDB_0231242
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_007089.4 (1039561..1040650, complement)

    Chromosome 3 - NC_007089.4Genomic Context describing neighboring genes Neighboring gene ARK family protein kinase Neighboring gene hypothetical protein Neighboring gene membrane bound O-acyl transferase family protein Neighboring gene signal recognition particle receptor beta subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007089.4

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic profiling of the extracellular matrix (slime sheath) of Dictyostelium discoideum. Huber RJ, et al. Proteomics, 2015 Oct. PMID 26152465
    2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by dictyBase

    Function Evidence Code Pubs
    enables 5S rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables 5S rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosomal large subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in extracellular matrix HDA PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    60S ribosomal protein L5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007089.4 Reference assembly

      Range
      1039561..1040650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_637337.1 → XP_642429.1  60S ribosomal protein L5 [Dictyostelium discoideum AX4]

      See identical proteins and their annotated locations for XP_642429.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q54XX3
      Conserved Domains (3) summary
      PTZ00069
      Location:1 → 292
      PTZ00069; 60S ribosomal protein L5; Provisional
      pfam00861
      Location:26 → 173
      Ribosomal_L18p; Ribosomal L18p/L5e family
      pfam14204
      Location:192 → 282
      Ribosomal_L18_c; Ribosomal L18 C-terminal region
    Nucleotide Protein
    Heading Accession and Version

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