U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CBG12171 Protein CBG12171 [ Caenorhabditis briggsae ]

    Gene ID: 8578239, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    CBG12171
    Gene description
    Protein CBG12171
    Locus tag
    CBG_12171
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CBG12171 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    7
    Sequence:
    Chromosome: V; NC_013488.2 (5484534..5486922)

    Chromosome V - NC_013488.2Genomic Context describing neighboring genes Neighboring gene Protein CBG27001 Neighboring gene Protein CBG12170 Neighboring gene Protein CBG27002 Neighboring gene Protein CBG27003

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_013488.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane raft IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Protein CBG12171
    XP_002636244.1
    • contains similarity to Pfam domain PF03409 Transmembrane glycoprotein contains similarity to Interpro domain IPR005071 (Protein of unknown function DUF274);
      Predicted

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013488.2 Reference assembly

      Range
      5484534..5486922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002636198.1 → XP_002636244.1  Protein CBG12171 [Caenorhabditis briggsae]

      See identical proteins and their annotated locations for XP_002636244.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9CZN0, A0AAE9EX47, A8XEX2
      Conserved Domains (1) summary
      pfam03409
      Location:38 → 405
      Glycoprotein; Transmembrane glycoprotein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials