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    CBG03527 Protein CBG03527 [ Caenorhabditis briggsae ]

    Gene ID: 8576658, updated on 6-Jun-2024

    Summary

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    Gene symbol
    CBG03527
    Gene description
    Protein CBG03527
    Locus tag
    CBG_03527
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See CBG03527 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    10
    Sequence:
    Chromosome: IV; NC_013487.2 (14129353..14140924, complement)

    Chromosome IV - NC_013487.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-GADR-3 Neighboring gene Protein CBG24349 Neighboring gene tRNA Neighboring gene tRNA Neighboring gene tRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013487.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-alanine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-proline transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-alanine transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein CBG03527
    XP_002634665.1
    • contains similarity to Pfam domain PF01490 Transmembrane amino acid transporter protein contains similarity to Interpro domain IPR013057 (Amino acid transporter, transmembrane);
      Predicted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013487.2 Reference assembly

      Range
      14129353..14140924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002634619.1 → XP_002634665.1  Protein CBG03527 [Caenorhabditis briggsae]

      See identical proteins and their annotated locations for XP_002634665.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9AED8, A0AAE9JG40, A8WV75
      Conserved Domains (1) summary
      cl00456
      Location:6 → 409
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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