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    Cbr-ptr-14 Protein CBR-PTR-14 [ Caenorhabditis briggsae ]

    Gene ID: 8576418, updated on 6-Jun-2024

    Summary

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    Gene symbol
    Cbr-ptr-14
    Gene description
    Protein CBR-PTR-14
    Locus tag
    CBG_04434
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Cbr-ptr-14 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    10
    Sequence:
    Chromosome: IV; NC_013487.2 (12173321..12178840, complement)

    Chromosome IV - NC_013487.2Genomic Context describing neighboring genes Neighboring gene Protein CBG04432 Neighboring gene Protein CBG04433 Neighboring gene Protein CBG04435 Neighboring gene Protein CBG04436

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013487.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in molting cycle, collagen and cuticulin-based cuticle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein CBR-PTR-14
    XP_002634423.1
    • C. briggsae CBR-PTR-14 protein; contains similarity to Pfam domains PF12349 (Sterol-sensing domain of SREBP cleavage-activation), PF02460 (Patched family), PF02355 (Protein export membrane protein) contains similarity to Interpro domains IPR003392 (Patched), IPR001036 (Acriflavin resistance protein), IPR022813 (Protein translocase subunit SecD/SecF);
      Predicted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013487.2 Reference assembly

      Range
      12173321..12178840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002634377.1 → XP_002634423.1  Protein CBR-PTR-14 [Caenorhabditis briggsae]

      See identical proteins and their annotated locations for XP_002634423.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9ACS2, A8WXJ4
      Conserved Domains (3) summary
      pfam02460
      Location:46 → 840
      Patched; Patched family
      pfam11712
      Location:197 → 270
      Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase
      pfam12349
      Location:289 → 432
      Sterol-sensing; Sterol-sensing domain of SREBP cleavage-activation
    Nucleotide Protein
    Heading Accession and Version

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