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    RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844396, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNI-like superfamily protein
    Primary source
    TAIR:AT1G80570
    Locus tag
    AT1G80570
    See related
    Araport:AT1G80570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21F11.10; T21F11_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (30290325..30292420)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Isocitrate/isopropylmalate dehydrogenase family protein Neighboring gene isopropylmalate dehydrogenase 2 Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene WRKY DNA-binding protein 66

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. F-box proteins in Arabidopsis. Xiao W, et al. Trends Plant Sci, 2000 Nov. PMID 11077244
    2. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_106705.3
    NM_202462.1
    NM_202463.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNI-like superfamily protein
    NP_565240.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974191.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974192.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30290325..30292420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106705.3 → NP_565240.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565240.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCX0, A0A5S9WW35
      Conserved Domains (2) summary
      cd09293
      Location:64 → 296
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:237 → 262
      LRR_AMN1; leucine-rich repeat [structural motif]

    2. NM_202463.1 → NP_974192.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974192.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCX0, A0A5S9WW35
      Conserved Domains (2) summary
      cd09293
      Location:64 → 296
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:237 → 262
      LRR_AMN1; leucine-rich repeat [structural motif]

    3. NM_202462.1 → NP_974191.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974191.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EC97, Q9M8M4
      UniProtKB/TrEMBL
      A0A178WCX0, A0A5S9WW35
      Conserved Domains (2) summary
      cd09293
      Location:77 → 309
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:250 → 275
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3EC97.1

    Gene LinkOut

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